Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99991 * 2 1 4 4 C 1.53001 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47698 * 185.00063 * 4 3 2 6 6 C 1.53004 * 109.46973 * 305.00158 * 4 3 2 7 7 N 1.46497 * 109.47168 * 64.99789 * 4 3 2 8 8 C 1.34777 * 120.00281 * 154.99949 * 7 4 3 9 9 O 1.21362 * 119.99819 * 0.02562 * 8 7 4 10 10 C 1.49304 * 120.00080 * 179.97438 * 8 7 4 11 11 O 1.21394 * 120.00425 * 0.02562 * 10 8 7 12 12 N 1.34777 * 120.00080 * 179.97438 * 10 8 7 13 13 C 1.39810 * 120.00253 * 185.61372 * 12 10 8 14 14 C 1.38791 * 120.08409 * 34.10190 * 13 12 10 15 15 C 1.38144 * 120.01579 * 179.97438 * 14 13 12 16 16 C 1.38589 * 120.18782 * 359.97438 * 15 14 13 17 17 F 1.35094 * 119.91428 * 180.02562 * 16 15 14 18 18 C 1.38337 * 120.16855 * 0.04756 * 16 15 14 19 19 C 1.38744 * 119.98461 * 359.93303 * 18 16 15 20 20 O 1.35746 * 120.09277 * 180.32007 * 19 18 16 21 21 C 1.34799 * 117.00204 * 354.20279 * 20 19 18 22 22 H 1.08000 * 119.99707 * 354.53130 * 21 20 19 23 23 C 1.38658 * 119.99911 * 174.52656 * 21 20 19 24 24 N 1.31560 * 119.99729 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00031 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47261 * 90.00187 * 25 23 21 27 27 H 1.48504 * 109.47233 * 209.99624 * 25 23 21 28 28 H 1.48500 * 109.47419 * 329.99759 * 25 23 21 29 29 H 1.08996 * 109.47316 * 300.00407 * 1 2 3 30 30 H 1.09004 * 109.46393 * 60.00197 * 1 2 3 31 31 H 1.08993 * 109.46944 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47641 * 59.99886 * 3 2 1 33 33 H 1.09002 * 109.47502 * 299.99656 * 3 2 1 34 34 H 1.09004 * 109.47102 * 299.99693 * 6 4 3 35 35 H 1.08998 * 109.47436 * 60.00087 * 6 4 3 36 36 H 1.09003 * 109.46862 * 179.97438 * 6 4 3 37 37 H 0.97002 * 120.00411 * 335.00421 * 7 4 3 38 38 H 0.97002 * 119.99799 * 5.61339 * 12 10 8 39 39 H 1.08000 * 119.99123 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.90537 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.00896 * 179.97438 * 18 16 15 42 42 H 0.96995 * 119.99566 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1765 0.0902 6 6 3.9780 0.3198 1.1826 7 7 3.9767 0.5639 -1.2508 8 6 5.2209 0.7939 -1.7151 9 8 5.9759 1.5149 -1.0962 10 6 5.6707 0.1608 -2.9903 11 8 4.9157 -0.5607 -3.6092 12 7 6.9148 0.3912 -3.4548 13 6 7.2972 -0.1046 -4.7049 14 6 6.3707 -0.1828 -5.7354 15 6 6.7502 -0.6724 -6.9701 16 6 8.0554 -1.0862 -7.1846 17 9 8.4206 -1.5636 -8.3944 18 6 8.9850 -1.0120 -6.1628 19 6 8.6116 -0.5211 -4.9200 20 8 9.5236 -0.4413 -3.9177 21 6 10.7424 -0.9655 -4.1560 22 1 10.9298 -1.5001 -5.0755 23 6 11.7554 -0.8182 -3.2208 24 7 12.9450 -1.3294 -3.4536 25 14 11.4310 0.1060 -1.6302 26 1 10.9517 -0.8442 -0.5945 27 1 12.6861 0.7507 -1.1674 28 1 10.3972 1.1461 -1.8640 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.6498 0.7816 2.1138 35 1 3.5351 -0.6721 1.0931 36 1 5.0646 0.2333 1.1828 37 1 3.3734 -0.0125 -1.7454 38 1 7.5448 0.9010 -2.9219 39 1 5.3529 0.1391 -5.5719 40 1 6.0279 -0.7322 -7.7709 41 1 10.0013 -1.3356 -6.3326 42 1 13.6535 -1.2267 -2.7992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761007267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -153.314640 kcal Electronic energy + Delta-G solvation = -29226.398855 eV Core-core repulsion = 24701.661880 eV Total energy + Delta-G solvation = -4524.736974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.36211 -40.90338 -39.68861 -38.71433 -38.10337 -36.57884 -35.66066 -34.28765 -32.55170 -31.40568 -29.73527 -28.84788 -27.75395 -26.16930 -25.56899 -24.96134 -22.55180 -21.74576 -21.06539 -20.26885 -18.86338 -18.27673 -17.84468 -17.34388 -16.84869 -16.42781 -16.24011 -15.95693 -15.59734 -15.48341 -15.25498 -15.09170 -14.83912 -14.20386 -14.11018 -14.05069 -13.88355 -13.56594 -13.44697 -13.32999 -12.88833 -12.61523 -12.47996 -12.37069 -12.21936 -11.92327 -11.65900 -11.56379 -11.45047 -11.34891 -10.96004 -10.83704 -10.44188 -10.15769 -9.93141 -9.77028 -9.47777 -9.41512 -9.02781 -8.08124 -7.37142 -6.57737 -4.25260 1.22829 1.85300 1.93236 2.34810 3.14765 3.18545 3.22750 3.30392 3.31754 3.68055 4.10130 4.13562 4.35190 4.45341 4.53290 4.63088 4.83239 4.88632 4.91441 4.93928 4.97828 5.05225 5.21399 5.28471 5.38572 5.45111 5.60523 5.69111 5.81213 5.93270 6.03626 6.14309 6.24740 6.58289 6.64983 6.71999 6.73222 6.76710 7.03301 7.35717 7.45682 7.59036 7.78256 7.82739 8.09631 8.74684 9.28006 10.48628 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.003309 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.071096 B = 8459.933607 C =10768.110333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.052 3.948 4 C 0.145 3.855 5 H 0.105 0.895 6 C -0.162 4.162 7 N -0.695 5.695 8 C 0.512 3.488 9 O -0.516 6.516 10 C 0.500 3.500 11 O -0.513 6.513 12 N -0.618 5.618 13 C 0.049 3.951 14 C -0.044 4.044 15 C -0.223 4.223 16 C 0.137 3.863 17 F -0.147 7.147 18 C -0.246 4.246 19 C 0.171 3.829 20 O -0.203 6.203 21 C -0.392 4.392 22 H 0.110 0.890 23 C 0.069 3.931 24 N -0.867 5.867 25 Si 0.903 3.097 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.257 1.257 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.423 0.577 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.151 0.849 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.568 5.912 5.985 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.026 4.026 4 C 0.040 3.960 5 H 0.123 0.877 6 C -0.221 4.221 7 N -0.349 5.349 8 C 0.293 3.707 9 O -0.391 6.391 10 C 0.282 3.718 11 O -0.389 6.389 12 N -0.264 5.264 13 C -0.044 4.044 14 C -0.065 4.065 15 C -0.244 4.244 16 C 0.117 3.883 17 F -0.125 7.125 18 C -0.266 4.266 19 C 0.116 3.884 20 O -0.106 6.106 21 C -0.467 4.467 22 H 0.128 0.872 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.728 3.272 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.180 1.180 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.261 0.739 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.169 0.831 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.196 5.828 6.319 22.873 hybrid contribution 0.052 0.316 0.432 0.538 sum -21.144 6.144 6.751 23.030 Atomic orbital electron populations 1.22765 0.80646 1.03063 1.00026 1.87911 1.19967 1.27191 1.95424 1.22864 0.92592 0.85592 1.01506 1.21165 0.92059 0.98669 0.84070 0.87732 1.22105 1.02360 1.00977 0.96621 1.45760 1.14297 1.50197 1.24695 1.20084 0.82843 0.81874 0.85915 1.90789 1.53097 1.36666 1.58578 1.20015 0.83299 0.82367 0.86128 1.90759 1.53608 1.35820 1.58696 1.42806 1.13419 1.52171 1.18025 1.16803 0.91658 1.10310 0.85678 1.20447 0.98637 0.97352 0.90029 1.20488 0.94855 1.10342 0.98664 1.17477 0.93252 0.97349 0.80202 1.91436 1.92435 1.85965 1.42698 1.20997 1.01679 1.11636 0.92312 1.18511 0.88320 0.93855 0.87740 1.83540 1.22206 1.69928 1.34962 1.20782 0.83934 1.33618 1.08394 0.87235 1.24490 0.93525 0.96495 0.99159 1.69637 1.01722 1.42620 1.36354 0.86217 0.78494 0.80641 0.81839 1.19599 1.20489 1.18050 0.94011 0.93910 0.89398 0.91400 0.92264 0.91516 0.91155 0.91758 0.74586 0.73907 0.84533 0.85507 0.83115 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.14 9.55 -35.23 -0.34 -3.48 16 3 C 0.05 0.35 5.68 37.16 0.21 0.56 16 4 C 0.14 1.32 2.98 -67.93 -0.20 1.12 16 5 H 0.10 0.96 7.58 -51.93 -0.39 0.57 16 6 C -0.16 -1.53 9.29 37.16 0.35 -1.18 16 7 N -0.69 -7.86 5.05 -54.29 -0.27 -8.13 16 8 C 0.51 7.41 7.85 -11.65 -0.09 7.31 16 9 O -0.52 -8.49 16.15 5.49 0.09 -8.40 16 10 C 0.50 8.18 7.61 -11.65 -0.09 8.09 16 11 O -0.51 -8.83 14.23 5.46 0.08 -8.75 16 12 N -0.62 -11.08 5.18 -10.17 -0.05 -11.13 16 13 C 0.05 0.96 6.28 -83.52 -0.52 0.44 16 14 C -0.04 -0.78 8.65 -39.41 -0.34 -1.12 16 15 C -0.22 -3.82 10.02 -39.49 -0.40 -4.21 16 16 C 0.14 2.61 7.29 -39.42 -0.29 2.32 16 17 F -0.15 -2.72 17.26 2.25 0.04 -2.68 16 18 C -0.25 -5.21 9.11 -39.36 -0.36 -5.57 16 19 C 0.17 3.75 6.67 -38.90 -0.26 3.50 16 20 O -0.20 -4.96 8.13 0.15 0.00 -4.96 16 21 C -0.39 -10.50 9.90 30.89 0.31 -10.19 16 22 H 0.11 3.01 5.53 -52.49 -0.29 2.72 16 23 C 0.07 1.84 5.49 -17.51 -0.10 1.75 16 24 N -0.87 -24.13 13.96 55.48 0.77 -23.36 16 25 Si 0.90 20.80 28.62 -169.99 -4.86 15.93 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.42 4.50 7.85 -40.82 -0.32 4.18 16 38 H 0.42 7.59 8.03 -40.82 -0.33 7.26 16 39 H 0.14 2.19 6.48 -52.49 -0.34 1.85 16 40 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 41 H 0.15 3.35 5.71 -52.48 -0.30 3.05 16 42 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -29.78 369.36 -4.53 -34.31 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.88 Total: 10.98 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -0.67 Total: 4.09 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.45 Total: -42.62 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.17 Total: -25.59 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.86 Total: 15.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.78 -4.53 -34.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761007267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.002 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds