Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99561 * 2 1 4 4 O 1.20828 * 120.00568 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99996 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46883 * 59.99106 * 5 3 2 7 7 C 1.53004 * 109.46797 * 300.00006 * 5 3 2 8 8 C 1.52992 * 109.47446 * 179.97438 * 5 3 2 9 9 N 1.46497 * 109.47249 * 185.00375 * 8 5 3 10 10 C 1.34780 * 120.00080 * 180.02562 * 9 8 5 11 11 O 1.21588 * 119.99800 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99992 * 179.72078 * 10 9 8 13 13 C 1.40129 * 120.00024 * 175.89776 * 12 10 9 14 14 C 1.38695 * 120.07287 * 34.59682 * 13 12 10 15 15 C 1.38208 * 120.01922 * 179.76830 * 14 13 12 16 16 C 1.38545 * 120.17468 * 0.50612 * 15 14 13 17 17 F 1.35099 * 119.92418 * 179.77127 * 16 15 14 18 18 C 1.38341 * 120.15055 * 359.74347 * 16 15 14 19 19 C 1.38739 * 119.97563 * 0.02562 * 18 16 15 20 20 O 1.35786 * 120.08658 * 180.02562 * 19 18 16 21 21 C 1.34809 * 116.99714 * 5.42761 * 20 19 18 22 22 H 1.08002 * 120.00007 * 354.96073 * 21 20 19 23 23 C 1.38640 * 119.99622 * 174.95283 * 21 20 19 24 24 N 1.31561 * 120.00376 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99639 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47239 * 90.00453 * 25 23 21 27 27 H 1.48499 * 109.46952 * 210.00383 * 25 23 21 28 28 H 1.48505 * 109.47447 * 330.00043 * 25 23 21 29 29 H 1.08996 * 109.47603 * 300.00693 * 1 2 3 30 30 H 1.09002 * 109.46929 * 60.00214 * 1 2 3 31 31 H 1.08998 * 109.46865 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47077 * 299.99277 * 7 5 3 33 33 H 1.09004 * 109.46976 * 59.99960 * 7 5 3 34 34 H 1.09006 * 109.46620 * 179.97438 * 7 5 3 35 35 H 1.09000 * 109.47161 * 64.99415 * 8 5 3 36 36 H 1.09009 * 109.46779 * 304.99909 * 8 5 3 37 37 H 0.96997 * 119.99937 * 359.97438 * 9 8 5 38 38 H 0.97004 * 119.99818 * 355.90192 * 12 10 9 39 39 H 1.07997 * 119.99486 * 0.02562 * 14 13 12 40 40 H 1.08005 * 119.90850 * 180.25346 * 15 14 13 41 41 H 1.08001 * 120.01356 * 180.02562 * 18 16 15 42 42 H 0.96998 * 120.00376 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.1128 0.5817 1.2502 8 6 4.0001 2.7422 -0.0002 9 7 5.4580 2.8203 -0.1201 10 6 6.0690 4.0215 -0.1416 11 8 5.4101 5.0402 -0.0619 12 7 7.4108 4.0932 -0.2462 13 6 8.0394 5.3409 -0.3552 14 6 7.5224 6.4403 0.3138 15 6 8.1459 7.6693 0.2094 16 6 9.2820 7.8097 -0.5710 17 9 9.8849 9.0144 -0.6731 18 6 9.8009 6.7190 -1.2455 19 6 9.1827 5.4813 -1.1413 20 8 9.6903 4.4091 -1.8019 21 6 10.8587 4.5868 -2.4505 22 1 11.3062 5.5686 -2.4976 23 6 11.4857 3.5093 -3.0569 24 7 10.9404 2.3134 -2.9998 25 14 13.1051 3.7555 -3.9550 26 1 14.2315 3.5592 -3.0074 27 1 13.2119 2.7711 -5.0616 28 1 13.1591 5.1319 -4.5100 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.7228 1.0761 2.1399 33 1 3.8038 -0.4636 1.2503 34 1 5.2014 0.6385 1.2504 35 1 3.6861 3.2144 0.9307 36 1 3.5381 3.2572 -0.8426 37 1 5.9837 2.0076 -0.1833 38 1 7.9414 3.2811 -0.2462 39 1 6.6346 6.3353 0.9198 40 1 7.7441 8.5234 0.7344 41 1 10.6868 6.8308 -1.8529 42 1 11.3793 1.5594 -3.4237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761662749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = -158.233483 kcal Electronic energy + Delta-G solvation = -28805.660405 eV Core-core repulsion = 24280.710134 eV Total energy + Delta-G solvation = -4524.950271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.23056 -40.95611 -40.20347 -38.81771 -37.13662 -36.48099 -35.72007 -34.03325 -32.67411 -32.40725 -29.40672 -28.49496 -28.03538 -26.56585 -25.49467 -23.94778 -22.40703 -21.63938 -20.67126 -20.48696 -18.46067 -18.32627 -17.86872 -17.66568 -16.98320 -16.70447 -16.52171 -15.64069 -15.33783 -15.21657 -14.97541 -14.91303 -14.40050 -14.30090 -14.14060 -13.93571 -13.61281 -13.49487 -13.35612 -13.21135 -12.98854 -12.76572 -12.35164 -12.32991 -12.12940 -11.76959 -11.64649 -11.45721 -11.34600 -11.14177 -10.95467 -10.72639 -10.68408 -10.55191 -9.89469 -9.76330 -9.45160 -9.03587 -8.96289 -7.85859 -7.09470 -6.61012 -4.18550 1.86443 1.86981 2.14334 2.20065 2.99565 3.06059 3.07765 3.11889 3.45842 3.84855 4.15337 4.36663 4.42431 4.47619 4.55361 4.75898 4.83551 4.85264 4.87444 4.95922 5.13536 5.17346 5.34730 5.35912 5.58775 5.60379 5.75297 5.77173 5.80440 6.02605 6.05287 6.21685 6.44565 6.61132 6.69861 6.92488 6.94946 7.08417 7.13832 7.29276 7.39601 7.67927 7.83613 8.24296 8.83001 8.86299 9.47082 10.56150 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.002672 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.110496 B =10477.681088 C =12619.057434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.499 6.499 5 C -0.097 4.097 6 H 0.119 0.881 7 C -0.146 4.146 8 C 0.156 3.844 9 N -0.746 5.746 10 C 0.706 3.294 11 O -0.582 6.582 12 N -0.663 5.663 13 C 0.077 3.923 14 C -0.050 4.050 15 C -0.228 4.228 16 C 0.128 3.872 17 F -0.152 7.152 18 C -0.258 4.258 19 C 0.157 3.843 20 O -0.169 6.169 21 C -0.392 4.392 22 H 0.094 0.906 23 C 0.043 3.957 24 N -0.861 5.861 25 Si 0.942 3.058 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.266 1.266 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.398 0.602 38 H 0.411 0.589 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 -7.152 6.973 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.312 3.688 4 O -0.386 6.386 5 C -0.116 4.116 6 H 0.137 0.863 7 C -0.203 4.203 8 C 0.031 3.969 9 N -0.404 5.404 10 C 0.407 3.593 11 O -0.459 6.459 12 N -0.310 5.310 13 C -0.018 4.018 14 C -0.070 4.070 15 C -0.248 4.248 16 C 0.108 3.892 17 F -0.131 7.131 18 C -0.279 4.279 19 C 0.101 3.899 20 O -0.071 6.071 21 C -0.468 4.468 22 H 0.112 0.888 23 C -0.162 4.162 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.247 0.753 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.160 0.840 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.842 -6.405 6.901 16.741 hybrid contribution 1.231 -0.402 -0.703 1.473 sum -12.612 -6.807 6.197 15.614 Atomic orbital electron populations 1.23294 0.76095 1.03774 1.02729 1.86494 1.23559 1.33211 1.84083 1.23431 0.91526 0.81464 0.72345 1.90724 1.67071 1.36216 1.44564 1.21214 0.88038 0.98999 1.03392 0.86283 1.21821 1.02304 1.00961 0.95253 1.20897 0.79345 0.92634 1.03983 1.44938 1.07227 1.07361 1.80827 1.15795 0.81824 0.83677 0.78049 1.90896 1.64380 1.33381 1.57286 1.42151 1.04711 1.08457 1.75689 1.16636 0.96126 0.85959 1.03052 1.20685 0.98912 0.90353 0.97072 1.20497 0.98489 0.98766 1.07073 1.17461 0.93028 0.79898 0.98796 1.91409 1.83070 1.43577 1.95000 1.20841 1.06038 0.91755 1.09269 1.18819 0.92843 0.87839 0.90376 1.83933 1.36444 1.30182 1.56590 1.21354 0.96663 0.96718 1.32061 0.88846 1.25262 0.99413 0.94230 0.97255 1.69999 1.38579 0.99462 1.41462 0.85689 0.80085 0.78776 0.78840 1.19752 1.20201 1.19072 0.91787 0.91759 0.87992 0.91658 0.90812 0.90475 0.90519 0.90406 0.76696 0.75309 0.83926 0.85945 0.83976 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.14 10.47 -39.26 -0.41 -3.55 16 3 C 0.47 4.83 7.26 36.01 0.26 5.09 16 4 O -0.50 -6.67 15.67 -18.75 -0.29 -6.96 16 5 C -0.10 -0.82 2.86 -91.77 -0.26 -1.09 16 6 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 7 C -0.15 -0.99 9.00 37.16 0.33 -0.65 16 8 C 0.16 1.82 4.41 -4.05 -0.02 1.81 16 9 N -0.75 -9.35 5.29 -65.23 -0.34 -9.69 16 10 C 0.71 12.12 8.41 -86.92 -0.73 11.39 16 11 O -0.58 -11.80 13.76 5.29 0.07 -11.73 16 12 N -0.66 -11.98 5.20 -14.07 -0.07 -12.05 16 13 C 0.08 1.60 6.33 -83.44 -0.53 1.07 16 14 C -0.05 -0.96 8.69 -39.42 -0.34 -1.31 16 15 C -0.23 -4.28 10.02 -39.48 -0.40 -4.67 16 16 C 0.13 2.57 7.29 -39.43 -0.29 2.29 16 17 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 18 C -0.26 -5.63 9.14 -39.36 -0.36 -5.99 16 19 C 0.16 3.61 6.66 -38.94 -0.26 3.35 16 20 O -0.17 -4.34 9.32 0.00 0.00 -4.34 16 21 C -0.39 -10.23 9.49 30.88 0.29 -9.94 16 22 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 24 N -0.86 -23.08 13.67 55.48 0.76 -22.32 16 25 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 28 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 34 H 0.08 0.47 7.18 -51.93 -0.37 0.10 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.06 7.96 -51.92 -0.41 0.65 16 37 H 0.40 3.93 7.67 -40.82 -0.31 3.62 16 38 H 0.41 6.93 8.59 -40.82 -0.35 6.58 16 39 H 0.14 2.71 6.19 -52.49 -0.32 2.38 16 40 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 41 H 0.14 3.09 5.64 -52.49 -0.30 2.80 16 42 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -32.26 368.87 -5.90 -38.16 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -4.86 Total: 11.69 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.33 Total: 3.63 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.34 Total: -44.06 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.63 Total: -26.58 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.26 -5.90 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.074 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds