Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99561 * 2 1 4 4 O 1.20828 * 120.00568 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99996 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46883 * 59.99106 * 5 3 2 7 7 C 1.53004 * 109.46797 * 300.00006 * 5 3 2 8 8 C 1.52992 * 109.47446 * 179.97438 * 5 3 2 9 9 N 1.46497 * 109.47249 * 185.00375 * 8 5 3 10 10 C 1.34780 * 120.00080 * 180.02562 * 9 8 5 11 11 O 1.21588 * 119.99800 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99992 * 179.72078 * 10 9 8 13 13 C 1.40129 * 120.00024 * 175.89776 * 12 10 9 14 14 C 1.38695 * 120.07287 * 34.59682 * 13 12 10 15 15 C 1.38208 * 120.01922 * 179.76830 * 14 13 12 16 16 C 1.38545 * 120.17468 * 0.50612 * 15 14 13 17 17 F 1.35099 * 119.92418 * 179.77127 * 16 15 14 18 18 C 1.38341 * 120.15055 * 359.74347 * 16 15 14 19 19 C 1.38739 * 119.97563 * 0.02562 * 18 16 15 20 20 O 1.35786 * 120.08658 * 180.02562 * 19 18 16 21 21 C 1.34809 * 116.99714 * 5.42761 * 20 19 18 22 22 H 1.08002 * 120.00007 * 354.96073 * 21 20 19 23 23 C 1.38640 * 119.99622 * 174.95283 * 21 20 19 24 24 N 1.31561 * 120.00376 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99639 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47239 * 90.00453 * 25 23 21 27 27 H 1.48499 * 109.46952 * 210.00383 * 25 23 21 28 28 H 1.48505 * 109.47447 * 330.00043 * 25 23 21 29 29 H 1.08996 * 109.47603 * 300.00693 * 1 2 3 30 30 H 1.09002 * 109.46929 * 60.00214 * 1 2 3 31 31 H 1.08998 * 109.46865 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47077 * 299.99277 * 7 5 3 33 33 H 1.09004 * 109.46976 * 59.99960 * 7 5 3 34 34 H 1.09006 * 109.46620 * 179.97438 * 7 5 3 35 35 H 1.09000 * 109.47161 * 64.99415 * 8 5 3 36 36 H 1.09009 * 109.46779 * 304.99909 * 8 5 3 37 37 H 0.96997 * 119.99937 * 359.97438 * 9 8 5 38 38 H 0.97004 * 119.99818 * 355.90192 * 12 10 9 39 39 H 1.07997 * 119.99486 * 0.02562 * 14 13 12 40 40 H 1.08005 * 119.90850 * 180.25346 * 15 14 13 41 41 H 1.08001 * 120.01356 * 180.02562 * 18 16 15 42 42 H 0.96998 * 120.00376 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.1128 0.5817 1.2502 8 6 4.0001 2.7422 -0.0002 9 7 5.4580 2.8203 -0.1201 10 6 6.0690 4.0215 -0.1416 11 8 5.4101 5.0402 -0.0619 12 7 7.4108 4.0932 -0.2462 13 6 8.0394 5.3409 -0.3552 14 6 7.5224 6.4403 0.3138 15 6 8.1459 7.6693 0.2094 16 6 9.2820 7.8097 -0.5710 17 9 9.8849 9.0144 -0.6731 18 6 9.8009 6.7190 -1.2455 19 6 9.1827 5.4813 -1.1413 20 8 9.6903 4.4091 -1.8019 21 6 10.8587 4.5868 -2.4505 22 1 11.3062 5.5686 -2.4976 23 6 11.4857 3.5093 -3.0569 24 7 10.9404 2.3134 -2.9998 25 14 13.1051 3.7555 -3.9550 26 1 14.2315 3.5592 -3.0074 27 1 13.2119 2.7711 -5.0616 28 1 13.1591 5.1319 -4.5100 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.7228 1.0761 2.1399 33 1 3.8038 -0.4636 1.2503 34 1 5.2014 0.6385 1.2504 35 1 3.6861 3.2144 0.9307 36 1 3.5381 3.2572 -0.8426 37 1 5.9837 2.0076 -0.1833 38 1 7.9414 3.2811 -0.2462 39 1 6.6346 6.3353 0.9198 40 1 7.7441 8.5234 0.7344 41 1 10.6868 6.8308 -1.8529 42 1 11.3793 1.5594 -3.4237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761662749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = -179.341364 kcal Electronic energy + Delta-G solvation = -28806.575712 eV Core-core repulsion = 24280.710134 eV Total energy + Delta-G solvation = -4525.865578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.81302 -41.89269 -41.56226 -40.40444 -38.26921 -37.76879 -36.82039 -35.55570 -34.28700 -33.68731 -31.06441 -29.95442 -28.68310 -27.55673 -27.27364 -24.87696 -23.95887 -23.19344 -21.97768 -21.39512 -20.12816 -19.80551 -19.26551 -18.73776 -18.21371 -17.75015 -17.32319 -17.13111 -16.94019 -16.61426 -16.49944 -16.14950 -15.95436 -15.54869 -15.44794 -15.27004 -15.13757 -14.88126 -14.60408 -14.17699 -14.04908 -13.88455 -13.68792 -13.41106 -13.39191 -13.01339 -12.90731 -12.59542 -12.49965 -12.33057 -12.16245 -12.14354 -11.82350 -11.64179 -11.51049 -11.35312 -11.02349 -10.80297 -10.22793 -9.52758 -8.73390 -8.49010 -6.14602 0.22794 0.48525 1.07203 1.30327 1.39291 1.45546 1.53563 1.88725 2.04599 2.16151 2.70122 3.07587 3.16747 3.21557 3.36609 3.47422 3.76359 3.82341 3.96805 4.15455 4.18315 4.31160 4.33025 4.38788 4.58058 4.59910 4.70209 4.71964 4.84367 4.92049 4.97097 5.04563 5.21496 5.24235 5.29342 5.32492 5.34526 5.40312 5.57685 5.90595 5.96082 6.09218 6.62320 6.94060 6.95884 7.44942 7.64866 8.71241 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.002672 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.110496 B =10477.681088 C =12619.057434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.087 4.087 6 H 0.140 0.860 7 C -0.143 4.143 8 C 0.159 3.841 9 N -0.724 5.724 10 C 0.704 3.296 11 O -0.613 6.613 12 N -0.662 5.662 13 C 0.079 3.921 14 C -0.051 4.051 15 C -0.205 4.205 16 C 0.122 3.878 17 F -0.145 7.145 18 C -0.264 4.264 19 C 0.132 3.868 20 O -0.200 6.200 21 C -0.417 4.417 22 H 0.098 0.902 23 C -0.007 4.007 24 N -0.903 5.903 25 Si 1.009 2.991 26 H -0.263 1.263 27 H -0.271 1.271 28 H -0.260 1.260 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.414 0.586 38 H 0.416 0.584 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 -7.564 7.554 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.107 4.107 6 H 0.158 0.842 7 C -0.200 4.200 8 C 0.035 3.965 9 N -0.382 5.382 10 C 0.405 3.595 11 O -0.493 6.493 12 N -0.310 5.310 13 C -0.017 4.017 14 C -0.072 4.072 15 C -0.225 4.225 16 C 0.102 3.898 17 F -0.124 7.124 18 C -0.285 4.285 19 C 0.078 3.922 20 O -0.105 6.105 21 C -0.492 4.492 22 H 0.115 0.885 23 C -0.206 4.206 24 N -0.539 5.539 25 Si 0.829 3.171 26 H -0.188 1.188 27 H -0.195 1.195 28 H -0.184 1.184 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.252 0.748 39 H 0.170 0.830 40 H 0.174 0.826 41 H 0.154 0.846 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.031 -6.853 7.507 17.326 hybrid contribution 1.071 -0.181 -0.752 1.321 sum -12.960 -7.035 6.756 16.220 Atomic orbital electron populations 1.23576 0.74695 1.05827 1.02513 1.86487 1.24945 1.32161 1.83507 1.23696 0.92044 0.81342 0.71238 1.90714 1.67974 1.37475 1.46520 1.21163 0.87197 0.96895 1.05417 0.84198 1.21840 1.02744 1.01510 0.93873 1.20861 0.78232 0.94890 1.02566 1.44755 1.07714 1.06579 1.79107 1.15922 0.81303 0.84501 0.77794 1.90866 1.64828 1.34876 1.58767 1.42134 1.05179 1.07922 1.75740 1.16868 0.95410 0.87331 1.02078 1.20868 0.99093 0.90256 0.96965 1.20876 0.96959 0.99462 1.05160 1.17455 0.93556 0.79722 0.99065 1.91426 1.83038 1.42942 1.94975 1.20920 1.05970 0.92180 1.09405 1.19146 0.93925 0.87849 0.91258 1.83909 1.36957 1.31356 1.58251 1.21734 0.97313 0.97330 1.32857 0.88465 1.26317 1.02720 0.93799 0.97812 1.70097 1.40399 1.00310 1.43102 0.84704 0.75719 0.78922 0.77710 1.18826 1.19549 1.18442 0.91906 0.92172 0.84815 0.92071 0.89255 0.89531 0.91453 0.92538 0.74825 0.74757 0.83030 0.82604 0.84597 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.68 10.47 -51.42 -0.54 -6.22 16 3 C 0.47 9.30 7.26 71.24 0.52 9.82 16 4 O -0.54 -14.44 15.67 21.96 0.34 -14.10 16 5 C -0.09 -1.36 2.86 -11.54 -0.03 -1.39 16 6 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 7 C -0.14 -1.61 9.00 71.98 0.65 -0.97 16 8 C 0.16 3.64 4.41 86.38 0.38 4.03 16 9 N -0.72 -17.52 5.29 -478.54 -2.53 -20.05 16 10 C 0.70 23.89 8.41 179.05 1.51 25.40 16 11 O -0.61 -24.68 13.76 -3.99 -0.05 -24.74 16 12 N -0.66 -23.89 5.20 -316.71 -1.65 -25.54 16 13 C 0.08 3.25 6.33 38.22 0.24 3.49 16 14 C -0.05 -1.92 8.69 22.37 0.19 -1.73 16 15 C -0.20 -7.20 10.02 22.34 0.22 -6.98 16 16 C 0.12 4.74 7.29 22.37 0.16 4.90 16 17 F -0.15 -5.33 17.26 44.97 0.78 -4.55 16 18 C -0.26 -11.56 9.14 22.41 0.20 -11.36 16 19 C 0.13 6.15 6.66 22.68 0.15 6.30 16 20 O -0.20 -10.60 9.32 -22.93 -0.21 -10.81 16 21 C -0.42 -22.28 9.49 67.92 0.64 -21.63 16 22 H 0.10 4.92 5.20 -2.91 -0.02 4.90 16 23 C -0.01 -0.34 5.49 84.83 0.47 0.13 16 24 N -0.90 -49.39 13.67 21.61 0.30 -49.09 16 25 Si 1.01 40.08 29.55 68.60 2.03 42.11 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 28 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 29 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 31 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.78 8.11 -2.39 -0.02 0.77 16 34 H 0.09 0.84 7.18 -2.38 -0.02 0.82 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.57 7.96 -2.38 -0.02 1.55 16 37 H 0.41 7.55 7.67 -92.71 -0.71 6.84 16 38 H 0.42 14.11 8.59 -92.71 -0.80 13.32 16 39 H 0.15 5.51 6.19 -2.91 -0.02 5.49 16 40 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.14 6.03 5.64 -2.91 -0.02 6.02 16 42 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -70.92 368.87 4.56 -66.36 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.40 Total: 35.12 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 6.50 Total: 11.50 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -3.88 Total: -94.68 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.46 Total: -55.87 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -70.92 4.56 -66.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.981 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds