Wall clock time and date at job start Sat Apr 11 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00244 * 2 1 4 4 O 1.20827 * 119.99901 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00282 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47036 * 299.99179 * 5 3 2 7 7 C 1.52998 * 109.47288 * 59.99357 * 5 3 2 8 8 C 1.53004 * 109.47117 * 179.97438 * 5 3 2 9 9 N 1.46497 * 109.46845 * 175.00130 * 8 5 3 10 10 C 1.34779 * 119.99887 * 180.02562 * 9 8 5 11 11 O 1.21592 * 119.99915 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00173 * 179.97438 * 10 9 8 13 13 C 1.40132 * 119.99892 * 183.91963 * 12 10 9 14 14 C 1.38694 * 120.07584 * 334.47402 * 13 12 10 15 15 C 1.38201 * 120.01860 * 179.97438 * 14 13 12 16 16 C 1.38542 * 120.17921 * 359.97438 * 15 14 13 17 17 F 1.35096 * 119.92416 * 180.02562 * 16 15 14 18 18 C 1.38339 * 120.14754 * 0.04997 * 16 15 14 19 19 C 1.38741 * 119.98278 * 359.93200 * 18 16 15 20 20 O 1.35772 * 120.09139 * 180.32332 * 19 18 16 21 21 C 1.34801 * 117.00171 * 354.37025 * 20 19 18 22 22 H 1.08000 * 119.99963 * 354.63993 * 21 20 19 23 23 C 1.38630 * 120.00489 * 174.62884 * 21 20 19 24 24 N 1.31571 * 120.00520 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46995 * 89.99986 * 25 23 21 27 27 H 1.48496 * 109.47429 * 209.99626 * 25 23 21 28 28 H 1.48499 * 109.47103 * 330.00157 * 25 23 21 29 29 H 1.09003 * 109.46951 * 60.00650 * 1 2 3 30 30 H 1.08998 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47273 * 300.00327 * 1 2 3 32 32 H 1.08997 * 109.47109 * 179.97438 * 7 5 3 33 33 H 1.08996 * 109.47222 * 300.00287 * 7 5 3 34 34 H 1.09002 * 109.46829 * 60.00203 * 7 5 3 35 35 H 1.08997 * 109.47352 * 54.99524 * 8 5 3 36 36 H 1.09004 * 109.46764 * 294.99170 * 8 5 3 37 37 H 0.97000 * 120.00220 * 359.97438 * 9 8 5 38 38 H 0.97004 * 119.99984 * 3.91592 * 12 10 9 39 39 H 1.08000 * 119.98864 * 359.97438 * 14 13 12 40 40 H 1.08006 * 119.90812 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.01276 * 180.02562 * 18 16 15 42 42 H 0.96999 * 120.00175 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7810 0.8909 7 6 4.1139 0.5808 -1.2482 8 6 4.0001 2.7420 -0.0002 9 7 5.4580 2.8202 0.1207 10 6 6.0690 4.0214 0.1422 11 8 5.4102 5.0401 0.0607 12 7 7.4102 4.0934 0.2539 13 6 8.0385 5.3415 0.3590 14 6 7.4277 6.4731 -0.1608 15 6 8.0482 7.7035 -0.0561 16 6 9.2804 7.8113 0.5679 17 9 9.8821 9.0168 0.6679 18 6 9.8963 6.6873 1.0884 19 6 9.2790 5.4489 0.9872 20 8 9.8784 4.3453 1.5031 21 6 11.1233 4.4992 1.9967 22 1 11.6323 5.4461 1.8925 23 6 11.7504 3.4423 2.6383 24 7 12.9652 3.5927 3.1205 25 14 10.8703 1.8044 2.8182 26 1 11.1744 0.9475 1.6441 27 1 11.3315 1.1281 4.0572 28 1 9.4055 2.0355 2.8962 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 5.2024 0.6383 -1.2480 33 1 3.8049 -0.4644 -1.2480 34 1 3.7246 1.0747 -2.1385 35 1 3.5375 3.2582 0.8410 36 1 3.6872 3.2129 -0.9321 37 1 5.9836 2.0076 0.1861 38 1 7.9405 3.2812 0.2617 39 1 6.4670 6.3926 -0.6475 40 1 7.5708 8.5836 -0.4611 41 1 10.8567 6.7738 1.5748 42 1 13.4041 2.8531 3.5691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761662753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:54 Heat of formation + Delta-G solvation = -152.774303 kcal Electronic energy + Delta-G solvation = -28906.577392 eV Core-core repulsion = 24381.863848 eV Total energy + Delta-G solvation = -4524.713544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.25355 -41.05829 -40.41833 -39.00212 -37.26074 -36.63198 -35.84671 -34.24319 -32.83424 -32.50899 -29.56225 -28.68020 -28.13289 -26.69990 -25.42578 -24.06355 -22.48906 -21.63769 -20.85503 -20.62618 -18.61601 -18.29778 -17.97520 -17.81449 -17.08399 -16.86584 -16.62488 -15.77080 -15.53455 -15.26303 -15.08182 -14.99957 -14.55145 -14.34100 -14.11572 -14.04250 -13.83290 -13.50087 -13.44221 -13.28765 -13.10148 -12.86199 -12.46225 -12.41726 -12.32360 -11.95197 -11.83104 -11.57191 -11.45183 -11.21950 -10.98416 -10.83340 -10.77652 -10.49543 -9.98627 -9.77329 -9.53690 -9.20357 -9.01447 -7.94902 -7.19200 -6.55021 -4.22362 1.77774 1.77936 2.03936 2.09002 2.82126 3.08039 3.11440 3.21126 3.27918 4.03395 4.07211 4.23976 4.29118 4.35400 4.41556 4.54235 4.68643 4.73093 4.77837 4.94058 5.01090 5.10400 5.23678 5.25270 5.46696 5.50333 5.65958 5.68936 5.71991 5.91926 5.94404 6.05908 6.26488 6.48111 6.62940 6.82959 6.92129 6.98351 7.08644 7.30633 7.47248 7.65414 7.87054 8.05057 8.64166 8.78046 9.33201 10.52356 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.002916 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.917468 B = 9599.672443 C =11895.759651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.498 6.498 5 C -0.097 4.097 6 H 0.119 0.881 7 C -0.147 4.147 8 C 0.155 3.845 9 N -0.747 5.747 10 C 0.706 3.294 11 O -0.576 6.576 12 N -0.664 5.664 13 C 0.080 3.920 14 C -0.066 4.066 15 C -0.218 4.218 16 C 0.124 3.876 17 F -0.150 7.150 18 C -0.243 4.243 19 C 0.160 3.840 20 O -0.211 6.211 21 C -0.390 4.390 22 H 0.108 0.892 23 C 0.065 3.935 24 N -0.873 5.873 25 Si 0.905 3.095 26 H -0.272 1.272 27 H -0.281 1.281 28 H -0.260 1.260 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.397 0.603 38 H 0.409 0.591 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.149 0.851 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.686 -9.645 -7.461 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.312 3.688 4 O -0.385 6.385 5 C -0.117 4.117 6 H 0.136 0.864 7 C -0.204 4.204 8 C 0.031 3.969 9 N -0.404 5.404 10 C 0.407 3.593 11 O -0.454 6.454 12 N -0.310 5.310 13 C -0.015 4.015 14 C -0.086 4.086 15 C -0.238 4.238 16 C 0.104 3.896 17 F -0.128 7.128 18 C -0.264 4.264 19 C 0.106 3.894 20 O -0.116 6.116 21 C -0.465 4.465 22 H 0.126 0.874 23 C -0.139 4.139 24 N -0.510 5.510 25 Si 0.730 3.270 26 H -0.197 1.197 27 H -0.207 1.207 28 H -0.184 1.184 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.232 0.768 38 H 0.244 0.756 39 H 0.176 0.824 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.415 -8.765 -7.368 22.540 hybrid contribution 0.391 -1.193 0.434 1.328 sum -19.024 -9.958 -6.934 22.564 Atomic orbital electron populations 1.23304 0.75988 1.03828 1.02768 1.86487 1.23638 1.33168 1.84054 1.23393 0.91478 0.81507 0.72415 1.90729 1.67050 1.36210 1.44512 1.21209 0.88182 0.98911 1.03360 0.86361 1.21824 1.02205 1.01044 0.95319 1.20929 0.79091 0.92752 1.04168 1.44973 1.07417 1.07248 1.80745 1.15777 0.81651 0.83734 0.78177 1.90837 1.64371 1.33029 1.57120 1.42182 1.04952 1.08442 1.75450 1.16724 0.93002 0.85367 1.06363 1.21090 1.00411 0.89612 0.97497 1.20612 0.95868 0.98681 1.08653 1.17493 0.92264 0.79878 0.99966 1.91422 1.83508 1.43409 1.94494 1.20949 1.04473 0.90761 1.10203 1.18426 0.90990 0.86740 0.93242 1.83504 1.30808 1.29438 1.67872 1.20752 0.86605 1.02511 1.36681 0.87422 1.24472 0.95383 0.99220 0.94841 1.69644 1.12242 1.33426 1.35669 0.86198 0.80699 0.82005 0.78060 1.19724 1.20680 1.18415 0.91741 0.87954 0.91730 0.90561 0.90757 0.91561 0.90260 0.90334 0.76822 0.75593 0.82365 0.85757 0.83360 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.85 10.47 -39.24 -0.41 -3.26 16 3 C 0.47 4.38 7.26 36.01 0.26 4.64 16 4 O -0.50 -6.21 15.67 -18.75 -0.29 -6.50 16 5 C -0.10 -0.71 2.86 -91.77 -0.26 -0.98 16 6 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 7 C -0.15 -0.84 9.00 37.16 0.33 -0.50 16 8 C 0.16 1.61 4.41 -4.04 -0.02 1.59 16 9 N -0.75 -8.19 5.29 -65.22 -0.34 -8.54 16 10 C 0.71 10.96 8.45 -86.91 -0.73 10.22 16 11 O -0.58 -10.69 13.26 5.28 0.07 -10.62 16 12 N -0.66 -10.91 5.29 -14.07 -0.07 -10.98 16 13 C 0.08 1.56 6.48 -83.44 -0.54 1.02 16 14 C -0.07 -1.22 8.79 -39.43 -0.35 -1.56 16 15 C -0.22 -3.95 10.02 -39.48 -0.40 -4.35 16 16 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 17 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 18 C -0.24 -5.25 9.11 -39.36 -0.36 -5.61 16 19 C 0.16 3.49 6.66 -38.94 -0.26 3.23 16 20 O -0.21 -5.00 8.01 0.06 0.00 -5.00 16 21 C -0.39 -10.26 9.90 30.88 0.31 -9.95 16 22 H 0.11 2.96 5.52 -52.49 -0.29 2.67 16 23 C 0.07 1.71 5.49 -17.52 -0.10 1.61 16 24 N -0.87 -24.02 13.96 55.48 0.77 -23.24 16 25 Si 0.91 19.61 28.62 -169.99 -4.86 14.75 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.08 0.38 7.18 -51.93 -0.37 0.01 16 33 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 3.23 7.67 -40.82 -0.31 2.92 16 38 H 0.41 6.02 8.38 -40.82 -0.34 5.68 16 39 H 0.16 2.89 5.52 -52.49 -0.29 2.61 16 40 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 41 H 0.15 3.36 5.71 -52.49 -0.30 3.06 16 42 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -31.92 366.68 -5.74 -37.66 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.83 Total: 10.27 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.33 Total: 2.79 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.36 Total: -42.76 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.63 Total: -25.39 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.86 Total: 14.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.92 -5.74 -37.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.111 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds