Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00244 * 2 1 4 4 O 1.20827 * 119.99901 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00282 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47036 * 299.99179 * 5 3 2 7 7 C 1.52998 * 109.47288 * 59.99357 * 5 3 2 8 8 C 1.53004 * 109.47117 * 179.97438 * 5 3 2 9 9 N 1.46497 * 109.46845 * 175.00130 * 8 5 3 10 10 C 1.34779 * 119.99887 * 180.02562 * 9 8 5 11 11 O 1.21592 * 119.99915 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00173 * 179.97438 * 10 9 8 13 13 C 1.40132 * 119.99892 * 183.91963 * 12 10 9 14 14 C 1.38694 * 120.07584 * 334.47402 * 13 12 10 15 15 C 1.38201 * 120.01860 * 179.97438 * 14 13 12 16 16 C 1.38542 * 120.17921 * 359.97438 * 15 14 13 17 17 F 1.35096 * 119.92416 * 180.02562 * 16 15 14 18 18 C 1.38339 * 120.14754 * 0.04997 * 16 15 14 19 19 C 1.38741 * 119.98278 * 359.93200 * 18 16 15 20 20 O 1.35772 * 120.09139 * 180.32332 * 19 18 16 21 21 C 1.34801 * 117.00171 * 354.37025 * 20 19 18 22 22 H 1.08000 * 119.99963 * 354.63993 * 21 20 19 23 23 C 1.38630 * 120.00489 * 174.62884 * 21 20 19 24 24 N 1.31571 * 120.00520 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46995 * 89.99986 * 25 23 21 27 27 H 1.48496 * 109.47429 * 209.99626 * 25 23 21 28 28 H 1.48499 * 109.47103 * 330.00157 * 25 23 21 29 29 H 1.09003 * 109.46951 * 60.00650 * 1 2 3 30 30 H 1.08998 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47273 * 300.00327 * 1 2 3 32 32 H 1.08997 * 109.47109 * 179.97438 * 7 5 3 33 33 H 1.08996 * 109.47222 * 300.00287 * 7 5 3 34 34 H 1.09002 * 109.46829 * 60.00203 * 7 5 3 35 35 H 1.08997 * 109.47352 * 54.99524 * 8 5 3 36 36 H 1.09004 * 109.46764 * 294.99170 * 8 5 3 37 37 H 0.97000 * 120.00220 * 359.97438 * 9 8 5 38 38 H 0.97004 * 119.99984 * 3.91592 * 12 10 9 39 39 H 1.08000 * 119.98864 * 359.97438 * 14 13 12 40 40 H 1.08006 * 119.90812 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.01276 * 180.02562 * 18 16 15 42 42 H 0.96999 * 120.00175 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7810 0.8909 7 6 4.1139 0.5808 -1.2482 8 6 4.0001 2.7420 -0.0002 9 7 5.4580 2.8202 0.1207 10 6 6.0690 4.0214 0.1422 11 8 5.4102 5.0401 0.0607 12 7 7.4102 4.0934 0.2539 13 6 8.0385 5.3415 0.3590 14 6 7.4277 6.4731 -0.1608 15 6 8.0482 7.7035 -0.0561 16 6 9.2804 7.8113 0.5679 17 9 9.8821 9.0168 0.6679 18 6 9.8963 6.6873 1.0884 19 6 9.2790 5.4489 0.9872 20 8 9.8784 4.3453 1.5031 21 6 11.1233 4.4992 1.9967 22 1 11.6323 5.4461 1.8925 23 6 11.7504 3.4423 2.6383 24 7 12.9652 3.5927 3.1205 25 14 10.8703 1.8044 2.8182 26 1 11.1744 0.9475 1.6441 27 1 11.3315 1.1281 4.0572 28 1 9.4055 2.0355 2.8962 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 5.2024 0.6383 -1.2480 33 1 3.8049 -0.4644 -1.2480 34 1 3.7246 1.0747 -2.1385 35 1 3.5375 3.2582 0.8410 36 1 3.6872 3.2129 -0.9321 37 1 5.9836 2.0076 0.1861 38 1 7.9405 3.2812 0.2617 39 1 6.4670 6.3926 -0.6475 40 1 7.5708 8.5836 -0.4611 41 1 10.8567 6.7738 1.5748 42 1 13.4041 2.8531 3.5691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761662753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -173.905252 kcal Electronic energy + Delta-G solvation = -28907.493698 eV Core-core repulsion = 24381.863848 eV Total energy + Delta-G solvation = -4525.629850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.83359 -41.96381 -41.61206 -40.52283 -38.36718 -37.78493 -36.83969 -35.65346 -34.45084 -33.72418 -31.18970 -30.09388 -28.68900 -27.56983 -27.21444 -24.90245 -23.94855 -23.18493 -22.07235 -21.39665 -20.13975 -19.88534 -19.36079 -18.75628 -18.29256 -17.75582 -17.35649 -17.21209 -16.96264 -16.65665 -16.53491 -16.17728 -15.87046 -15.68506 -15.53791 -15.29132 -15.14323 -14.91855 -14.61375 -14.24625 -14.16925 -13.97266 -13.74068 -13.59560 -13.39520 -13.10473 -12.90575 -12.60505 -12.51467 -12.40422 -12.16192 -12.14876 -11.82106 -11.65299 -11.50137 -11.40288 -11.00751 -10.90172 -10.25439 -9.59321 -8.75557 -8.49142 -6.23772 0.19017 0.42008 1.08069 1.26160 1.36457 1.42252 1.55353 1.86248 1.99925 2.29487 2.66780 2.78801 3.02797 3.14794 3.36608 3.40167 3.77137 3.82432 3.92814 4.15492 4.16223 4.30239 4.31236 4.33035 4.51110 4.60907 4.69837 4.72143 4.84823 4.89190 4.95003 5.10582 5.18172 5.22057 5.27028 5.33862 5.42142 5.47121 5.60042 5.83675 5.90474 6.10992 6.62873 6.82309 6.90622 7.37905 7.47407 8.61821 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.002916 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.917468 B = 9599.672443 C =11895.759651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.087 4.087 6 H 0.143 0.857 7 C -0.144 4.144 8 C 0.158 3.842 9 N -0.723 5.723 10 C 0.705 3.295 11 O -0.606 6.606 12 N -0.662 5.662 13 C 0.095 3.905 14 C -0.067 4.067 15 C -0.192 4.192 16 C 0.113 3.887 17 F -0.148 7.148 18 C -0.254 4.254 19 C 0.137 3.863 20 O -0.219 6.219 21 C -0.401 4.401 22 H 0.077 0.923 23 C 0.010 3.990 24 N -0.922 5.922 25 Si 0.974 3.026 26 H -0.255 1.255 27 H -0.278 1.278 28 H -0.249 1.249 29 H 0.061 0.939 30 H 0.133 0.867 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.415 0.585 38 H 0.418 0.582 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.126 0.874 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.984 -11.728 -8.436 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.106 4.106 6 H 0.161 0.839 7 C -0.201 4.201 8 C 0.034 3.966 9 N -0.380 5.380 10 C 0.406 3.594 11 O -0.486 6.486 12 N -0.309 5.309 13 C -0.001 4.001 14 C -0.087 4.087 15 C -0.211 4.211 16 C 0.093 3.907 17 F -0.126 7.126 18 C -0.275 4.275 19 C 0.084 3.916 20 O -0.125 6.125 21 C -0.477 4.477 22 H 0.095 0.905 23 C -0.189 4.189 24 N -0.561 5.561 25 Si 0.795 3.205 26 H -0.179 1.179 27 H -0.203 1.203 28 H -0.172 1.172 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.253 0.747 38 H 0.255 0.745 39 H 0.187 0.813 40 H 0.175 0.825 41 H 0.144 0.856 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.741 -10.892 -8.370 25.717 hybrid contribution 0.919 -0.382 0.627 1.176 sum -20.822 -11.273 -7.743 24.911 Atomic orbital electron populations 1.23565 0.74751 1.05782 1.02493 1.86482 1.24884 1.32261 1.83511 1.23746 0.92155 0.81308 0.71251 1.90720 1.68015 1.37482 1.46503 1.21174 0.87047 0.96970 1.05455 0.83921 1.21849 1.02845 1.01475 0.93916 1.20882 0.78151 0.94859 1.02756 1.44757 1.07783 1.06546 1.78957 1.15880 0.81085 0.84564 0.77873 1.90810 1.64802 1.34558 1.58453 1.42143 1.05494 1.07791 1.75481 1.16828 0.91896 0.86954 1.04469 1.21309 1.00639 0.89414 0.97359 1.20984 0.94422 0.99782 1.05960 1.17529 0.93008 0.79457 1.00734 1.91425 1.83628 1.43036 1.94546 1.20949 1.03978 0.91936 1.10612 1.18701 0.92177 0.86480 0.94211 1.83449 1.29699 1.29986 1.69398 1.20625 0.87886 1.01784 1.37423 0.90526 1.25387 0.96053 1.03179 0.94273 1.69750 1.14049 1.34925 1.37385 0.85170 0.79785 0.76994 0.78564 1.17934 1.20343 1.17247 0.91971 0.84902 0.92149 0.89281 0.89378 0.92218 0.92233 0.91443 0.74682 0.74494 0.81306 0.82461 0.85580 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -4.90 10.47 -51.34 -0.54 -5.43 16 3 C 0.47 8.02 7.26 71.24 0.52 8.54 16 4 O -0.54 -13.13 15.67 21.96 0.34 -12.78 16 5 C -0.09 -1.05 2.86 -11.54 -0.03 -1.08 16 6 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 7 C -0.14 -1.17 9.00 71.98 0.65 -0.53 16 8 C 0.16 2.99 4.41 86.38 0.38 3.37 16 9 N -0.72 -13.91 5.29 -478.52 -2.53 -16.44 16 10 C 0.71 20.33 8.45 179.05 1.51 21.84 16 11 O -0.61 -21.42 13.26 -4.00 -0.05 -21.48 16 12 N -0.66 -20.37 5.29 -316.69 -1.67 -22.04 16 13 C 0.09 3.54 6.48 38.22 0.25 3.79 16 14 C -0.07 -2.33 8.79 22.37 0.20 -2.14 16 15 C -0.19 -6.50 10.02 22.33 0.22 -6.28 16 16 C 0.11 4.40 7.29 22.37 0.16 4.56 16 17 F -0.15 -5.62 17.26 44.97 0.78 -4.84 16 18 C -0.25 -11.25 9.11 22.41 0.20 -11.05 16 19 C 0.14 5.98 6.66 22.69 0.15 6.13 16 20 O -0.22 -10.46 8.01 -22.70 -0.18 -10.64 16 21 C -0.40 -21.89 9.90 67.91 0.67 -21.22 16 22 H 0.08 4.52 5.52 -2.91 -0.02 4.51 16 23 C 0.01 0.54 5.49 84.83 0.47 1.01 16 24 N -0.92 -52.44 13.96 21.61 0.30 -52.14 16 25 Si 0.97 39.95 28.62 68.60 1.96 41.92 16 26 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 27 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 29 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 32 H 0.09 0.52 7.18 -2.39 -0.02 0.51 16 33 H 0.09 0.53 8.11 -2.39 -0.02 0.51 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 1.40 7.95 -2.39 -0.02 1.38 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.42 5.19 7.67 -92.71 -0.71 4.48 16 38 H 0.42 11.30 8.38 -92.71 -0.78 10.52 16 39 H 0.17 5.74 5.52 -2.91 -0.02 5.72 16 40 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 41 H 0.13 6.13 5.71 -2.91 -0.02 6.11 16 42 H 0.29 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -71.51 366.68 4.57 -66.93 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.38 Total: 28.55 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 6.55 Total: 8.40 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -3.90 Total: -90.62 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.43 Total: -50.34 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.78 Total: -4.84 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.96 Total: 41.92 kcal Total: -71.51 4.57 -66.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.973 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds