Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48504 * 109.46920 * 240.00026 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99795 * 3 2 1 7 7 C 1.39003 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.37301 * 119.99972 * 359.72316 * 7 2 1 10 10 C 1.36438 * 126.05650 * 180.27942 * 9 7 2 11 11 C 1.35786 * 107.49868 * 179.97438 * 10 9 7 12 12 N 1.40291 * 126.10040 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99916 * 179.97438 * 12 11 10 14 14 O 1.21397 * 120.00385 * 359.97438 * 13 12 11 15 15 C 1.49311 * 119.99820 * 179.97438 * 13 12 11 16 16 O 1.21366 * 119.99974 * 359.97438 * 15 13 12 17 17 N 1.34769 * 120.00061 * 180.02562 * 15 13 12 18 18 C 1.46501 * 120.00313 * 180.02562 * 17 15 13 19 19 C 1.54351 * 110.81985 * 267.96907 * 18 17 15 20 20 C 1.51368 * 105.16780 * 215.42368 * 19 18 17 21 21 C 1.38500 * 130.38933 * 197.18371 * 20 19 18 22 22 C 1.38101 * 120.21611 * 179.97438 * 21 20 19 23 23 C 1.38257 * 119.93280 * 0.02562 * 22 21 20 24 24 C 1.38097 * 119.93850 * 359.97438 * 23 22 21 25 25 C 1.38212 * 109.76082 * 17.19364 * 20 19 18 26 26 C 1.51365 * 109.76121 * 359.97438 * 25 20 19 27 27 C 1.40728 * 107.79917 * 359.97438 * 11 10 9 28 28 N 1.30869 * 108.37411 * 359.76052 * 27 11 10 29 29 H 0.97004 * 119.99619 * 0.02562 * 1 2 3 30 30 H 1.08006 * 126.25127 * 359.93982 * 10 9 7 31 31 H 0.97005 * 119.99986 * 359.97438 * 12 11 10 32 32 H 0.97001 * 120.00390 * 359.97438 * 17 15 13 33 33 H 1.08996 * 110.73146 * 31.58954 * 18 17 15 34 34 H 1.09001 * 110.30379 * 334.34615 * 19 18 17 35 35 H 1.09000 * 110.30285 * 96.50217 * 19 18 17 36 36 H 1.08005 * 119.89047 * 0.02562 * 21 20 19 37 37 H 1.08002 * 120.03200 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.02796 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.89617 * 180.02562 * 24 23 22 40 40 H 1.08998 * 110.30733 * 223.89710 * 26 25 20 41 41 H 1.08997 * 110.39193 * 101.77964 * 26 25 20 42 42 H 1.07994 * 125.80713 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.1006 1.6963 -1.2125 5 1 1.2818 2.7465 -0.0006 6 1 3.1006 1.6964 1.2125 7 6 2.0079 -1.2038 -0.0005 8 1 3.0879 -1.2039 -0.0001 9 7 1.3214 -2.3929 0.0047 10 6 1.8751 -3.6398 0.0102 11 6 0.8572 -4.5385 0.0147 12 7 0.9879 -5.9353 0.0205 13 6 -0.1115 -6.7149 0.0251 14 8 -1.2148 -6.2085 0.0246 15 6 0.0275 -8.2016 0.0308 16 8 1.1305 -8.7079 0.0308 17 7 -1.0718 -8.9812 0.0348 18 6 -0.9354 -10.4398 0.0409 19 6 -0.9362 -10.9969 -1.3985 20 6 -1.6602 -12.3233 -1.3095 21 6 -1.6886 -13.3912 -2.1909 22 6 -2.4310 -14.5173 -1.8947 23 6 -3.1490 -14.5796 -0.7148 24 6 -3.1220 -13.5159 0.1654 25 6 -2.3782 -12.3855 -0.1301 26 6 -2.1854 -11.1055 0.6545 27 6 -0.3521 -3.8188 0.0124 28 7 -0.0714 -2.5406 0.0120 29 1 -0.4850 0.8401 -0.0004 30 1 2.9303 -3.8700 0.0103 31 1 1.8695 -6.3400 0.0213 32 1 -1.9534 -8.5766 0.0344 33 1 -0.0346 -10.7409 0.5756 34 1 -1.4688 -10.3194 -2.0660 35 1 0.0858 -11.1465 -1.7467 36 1 -1.1276 -13.3433 -3.1126 37 1 -2.4514 -15.3482 -2.5844 38 1 -3.7304 -15.4594 -0.4818 39 1 -3.6828 -13.5654 1.0870 40 1 -2.0164 -11.3293 1.7078 41 1 -3.0533 -10.4560 0.5410 42 1 -1.3429 -4.2483 0.0153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762683870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = 45.154900 kcal Electronic energy + Delta-G solvation = -27224.871834 eV Core-core repulsion = 23171.803121 eV Total energy + Delta-G solvation = -4053.068713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.88814 -40.19665 -39.42079 -37.99688 -36.50056 -34.51689 -33.39904 -33.01838 -31.76320 -30.34362 -28.77911 -27.98676 -27.67700 -25.49099 -24.19511 -22.47862 -21.34541 -21.25782 -20.94010 -20.37828 -19.49467 -18.22196 -17.50051 -16.87654 -16.49635 -15.93854 -15.69414 -15.50712 -15.35876 -15.19424 -15.06490 -14.15768 -13.96853 -13.83988 -13.56560 -13.53299 -13.24523 -13.15972 -13.07028 -12.99591 -12.74914 -11.93627 -11.75131 -11.60764 -11.56883 -11.47897 -11.28184 -11.24992 -11.12297 -10.89152 -10.59030 -10.31125 -9.40815 -9.23933 -9.17335 -9.13539 -8.89366 -8.84056 -8.14734 -6.80031 -6.61683 -4.29302 1.01346 1.06253 1.59843 2.50495 2.93242 3.02812 3.06628 3.28483 3.42313 3.68466 3.72068 3.89361 4.01623 4.26503 4.35261 4.56633 4.65242 4.68987 4.72789 4.77945 4.84139 4.96856 5.00379 5.18159 5.26691 5.32105 5.43848 5.50316 5.62319 5.76685 5.81497 6.06931 6.17939 6.18456 6.20716 6.30124 6.33919 6.66595 6.73076 6.86937 6.88617 7.14534 7.16272 7.72634 7.82089 8.06572 8.16481 8.45875 8.67421 9.29470 9.58107 10.34011 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.044665 B = 0.001700 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.745583 B =16465.792575 C =16682.302400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.077 4.077 11 C -0.071 4.071 12 N -0.582 5.582 13 C 0.483 3.517 14 O -0.523 6.523 15 C 0.518 3.482 16 O -0.526 6.526 17 N -0.698 5.698 18 C 0.146 3.854 19 C -0.097 4.097 20 C -0.090 4.090 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.104 4.104 25 C -0.095 4.095 26 C -0.089 4.089 27 C -0.026 4.026 28 N -0.261 5.261 29 H 0.277 0.723 30 H 0.149 0.851 31 H 0.409 0.591 32 H 0.415 0.585 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 -23.967 -1.038 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.096 4.904 10 C -0.229 4.229 11 C -0.176 4.176 12 N -0.225 5.225 13 C 0.264 3.736 14 O -0.400 6.400 15 C 0.300 3.700 16 O -0.401 6.401 17 N -0.352 5.352 18 C 0.041 3.959 19 C -0.135 4.135 20 C -0.090 4.090 21 C -0.124 4.124 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.096 4.096 26 C -0.126 4.126 27 C -0.202 4.202 28 N -0.091 5.091 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.244 0.756 32 H 0.252 0.748 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.254 -22.598 -1.029 23.018 hybrid contribution 0.797 -0.316 -0.069 0.861 sum -3.456 -22.914 -1.098 23.199 Atomic orbital electron populations 1.70199 1.06177 1.28273 1.34718 1.25665 0.95732 1.00360 0.95354 0.85868 0.79154 0.79441 0.79557 1.19084 1.20081 1.19085 1.19888 0.91765 0.80488 1.53334 0.86458 1.44561 1.04096 1.03360 1.38411 1.21306 0.96983 0.85202 1.19379 1.17252 0.94639 0.80596 1.25158 1.42143 1.08609 1.04613 1.67107 1.19606 0.85343 0.86789 0.81885 1.90658 1.25411 1.74239 1.49700 1.20336 0.84672 0.88356 0.76663 1.90737 1.25559 1.75707 1.48104 1.45703 1.09887 1.05768 1.73794 1.21624 0.99503 0.78870 0.95920 1.21516 1.01181 0.93148 0.97675 1.20504 0.98118 0.95430 0.94961 1.20655 0.99722 0.92785 0.99259 1.21058 0.97433 0.97907 0.97333 1.21042 0.99878 0.98514 0.94548 1.20620 0.99168 0.92613 0.99839 1.20406 0.97891 0.95197 0.96078 1.21288 0.97929 0.93596 0.99818 1.24144 0.97933 0.90758 1.07338 1.78263 0.90089 1.14982 1.25811 0.91282 0.83335 0.75571 0.74795 0.87389 0.89302 0.89765 0.86114 0.85874 0.85874 0.86105 0.89559 0.89124 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.05 11.81 55.50 0.66 -20.39 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.57 29.55 -169.99 -5.02 13.55 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.32 -8.39 10.25 -14.82 -0.15 -8.54 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.72 3.73 -11.40 -0.04 -3.76 16 10 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 11 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 12 N -0.58 -10.79 5.45 -10.45 -0.06 -10.85 16 13 C 0.48 8.50 7.85 -11.65 -0.09 8.41 16 14 O -0.52 -10.29 13.62 5.46 0.07 -10.22 16 15 C 0.52 7.50 7.88 -11.65 -0.09 7.41 16 16 O -0.53 -8.32 16.12 5.48 0.09 -8.24 16 17 N -0.70 -7.80 5.13 -52.92 -0.27 -8.07 16 18 C 0.15 1.38 3.45 -66.52 -0.23 1.15 16 19 C -0.10 -0.90 6.49 -26.85 -0.17 -1.07 16 20 C -0.09 -0.82 6.14 -104.21 -0.64 -1.46 16 21 C -0.11 -0.88 10.04 -39.54 -0.40 -1.28 16 22 C -0.12 -0.87 10.05 -39.62 -0.40 -1.27 16 23 C -0.12 -0.87 10.05 -39.63 -0.40 -1.27 16 24 C -0.10 -0.80 10.04 -39.53 -0.40 -1.20 16 25 C -0.10 -0.82 6.14 -104.21 -0.64 -1.46 16 26 C -0.09 -0.68 6.49 -26.86 -0.17 -0.86 16 27 C -0.03 -0.67 10.85 -17.02 -0.18 -0.85 16 28 N -0.26 -7.43 10.39 30.81 0.32 -7.11 16 29 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.15 2.90 8.06 -52.48 -0.42 2.47 16 31 H 0.41 6.52 8.29 -40.82 -0.34 6.18 16 32 H 0.41 4.24 7.89 -40.82 -0.32 3.92 16 33 H 0.11 1.12 7.55 -51.93 -0.39 0.72 16 34 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.63 7.80 -51.93 -0.41 0.22 16 42 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -32.62 364.96 -8.28 -40.90 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.69 Total: 14.06 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -4.83 Total: -5.38 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.60 Total: -50.18 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.16 Total: -18.46 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.62 -8.28 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762683870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.057 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds