Wall clock time and date at job start Sat Apr 11 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00085 * 2 1 4 4 O 1.21488 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.48353 * 119.99885 * 179.97438 * 3 2 1 6 6 C 1.39297 * 119.56455 * 179.97438 * 5 3 2 7 7 C 1.38450 * 119.19535 * 179.97438 * 6 5 3 8 8 C 1.39918 * 118.34726 * 0.02562 * 7 6 5 9 9 C 1.47902 * 120.46520 * 179.97438 * 8 7 6 10 10 O 1.21449 * 119.99443 * 0.02562 * 9 8 7 11 11 O 1.34685 * 120.00141 * 179.97438 * 9 8 7 12 12 C 1.45203 * 117.00008 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47055 * 180.02562 * 12 11 9 14 14 C 1.38636 * 119.74910 * 269.72865 * 13 12 11 15 15 C 1.37613 * 120.24662 * 179.72471 * 14 13 12 16 16 C 1.40716 * 119.74384 * 0.56249 * 15 14 13 17 17 C 1.41404 * 120.23883 * 179.68556 * 16 15 14 18 18 H 1.08000 * 119.99335 * 204.41090 * 17 16 15 19 19 C 1.39933 * 120.00294 * 24.40951 * 17 16 15 20 20 N 1.30826 * 120.00408 * 17.84834 * 19 17 16 21 21 Si 1.86810 * 120.00100 * 197.84855 * 19 17 16 22 22 H 1.48497 * 109.47331 * 89.99959 * 21 19 17 23 23 H 1.48500 * 109.47019 * 210.00340 * 21 19 17 24 24 H 1.48506 * 109.46548 * 329.99647 * 21 19 17 25 25 C 1.40713 * 119.51242 * 359.71141 * 16 15 14 26 26 C 1.37618 * 119.74275 * 359.97438 * 25 16 15 27 27 C 1.39768 * 119.06864 * 0.02562 * 8 7 6 28 28 N 1.31407 * 120.71423 * 0.02562 * 27 8 7 29 29 H 1.09002 * 109.47261 * 300.00555 * 1 2 3 30 30 H 1.09004 * 109.47138 * 60.00633 * 1 2 3 31 31 H 1.08996 * 109.47577 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99916 * 179.97438 * 2 1 3 33 33 H 1.07995 * 120.40206 * 0.25357 * 6 5 3 34 34 H 1.07992 * 120.82357 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47037 * 299.99608 * 12 11 9 36 36 H 1.09000 * 109.47201 * 60.00204 * 12 11 9 37 37 H 1.08004 * 119.87238 * 359.97347 * 14 13 12 38 38 H 1.08006 * 120.12499 * 180.27822 * 15 14 13 39 39 H 0.97000 * 120.00287 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.12587 * 179.97438 * 25 16 15 41 41 H 1.07995 * 119.86890 * 179.97438 * 26 25 16 42 42 H 1.08000 * 119.64297 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6224 1.1671 0.0006 6 6 4.3097 2.3787 0.0000 7 6 5.6942 2.3697 0.0011 8 6 6.3506 1.1341 0.0022 9 6 7.8282 1.0698 0.0028 10 8 8.4804 2.0943 0.0028 11 8 8.4504 -0.1247 0.0043 12 6 9.9023 -0.1117 0.0054 13 6 10.4174 -1.5281 0.0064 14 6 10.6569 -2.1721 1.2105 15 6 11.1218 -3.4672 1.2235 16 6 11.3653 -4.1337 0.0083 17 6 11.8494 -5.4623 0.0094 18 1 12.3980 -5.8377 -0.8418 19 6 11.6176 -6.2906 1.1131 20 7 10.6828 -5.9847 1.9758 21 14 12.6431 -7.8332 1.3550 22 1 13.8439 -7.5074 2.1655 23 1 11.8340 -8.8600 2.0596 24 1 13.0663 -8.3586 0.0321 25 6 11.1240 -3.4682 -1.2078 26 6 10.6529 -2.1752 -1.1967 27 6 5.5903 -0.0387 0.0016 28 7 4.2772 0.0127 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.9500 -0.8400 0.0004 33 1 3.7693 3.3137 0.0033 34 1 6.2536 3.2935 0.0011 35 1 10.2617 0.4045 -0.8848 36 1 10.2604 0.4061 0.8952 37 1 10.4741 -1.6567 2.1419 38 1 11.3035 -3.9686 2.1627 39 1 10.5224 -6.5587 2.7411 40 1 11.3079 -3.9701 -2.1462 41 1 10.4674 -1.6623 -2.1288 42 1 6.0873 -0.9975 0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:31 Heat of formation + Delta-G solvation = -68.250496 kcal Electronic energy + Delta-G solvation = -26948.761506 eV Core-core repulsion = 22858.482415 eV Total energy + Delta-G solvation = -4090.279092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15545 -40.10400 -39.05348 -37.73047 -36.21786 -35.06763 -33.93879 -33.02683 -32.16377 -30.80494 -29.43016 -28.02254 -27.19483 -25.29529 -23.96106 -23.77008 -21.72427 -21.14813 -20.82778 -20.12577 -18.87552 -17.98794 -17.44526 -17.33009 -16.47319 -16.20085 -15.74999 -15.65571 -15.41754 -15.31443 -14.79006 -14.30026 -14.25226 -13.91848 -13.74020 -13.56174 -13.15772 -13.10544 -12.78934 -12.64503 -12.47547 -12.45590 -12.08640 -11.79239 -11.24513 -11.06049 -10.97784 -10.76341 -10.64069 -10.48350 -10.39305 -10.27845 -9.94087 -9.76462 -9.70253 -9.52318 -9.45685 -9.28283 -7.62720 -7.51772 -6.92050 -4.52156 -0.14176 0.80300 2.01550 2.29759 2.70706 2.71834 2.85849 2.95501 2.99915 3.02532 3.22212 3.52194 3.71971 3.81591 4.37123 4.40024 4.46072 4.50543 4.74159 4.84758 4.89336 5.12500 5.33841 5.40178 5.51612 5.54339 5.57848 5.61262 5.67517 5.95960 5.99829 6.08177 6.18482 6.25467 6.62165 6.82015 6.92324 6.97183 7.12276 7.20607 7.31569 7.45861 7.67051 7.75666 7.82511 7.90460 7.94651 8.13648 8.48459 8.73092 8.80896 10.01526 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.002104 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.563264 B =13307.456431 C =14891.269992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.714 5.714 3 C 0.571 3.429 4 O -0.530 6.530 5 C 0.100 3.900 6 C -0.124 4.124 7 C -0.019 4.019 8 C -0.148 4.148 9 C 0.505 3.495 10 O -0.509 6.509 11 O -0.342 6.342 12 C 0.138 3.862 13 C -0.240 4.240 14 C -0.074 4.074 15 C -0.171 4.171 16 C 0.119 3.881 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.783 5.783 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.230 4.230 26 C -0.062 4.062 27 C 0.161 3.839 28 N -0.466 5.466 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.416 0.584 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.283 0.717 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.710 9.111 -1.516 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.365 5.365 3 C 0.355 3.645 4 O -0.406 6.406 5 C -0.038 4.038 6 C -0.144 4.144 7 C -0.045 4.045 8 C -0.152 4.152 9 C 0.348 3.652 10 O -0.399 6.399 11 O -0.258 6.258 12 C 0.066 3.934 13 C -0.241 4.241 14 C -0.093 4.093 15 C -0.190 4.190 16 C 0.116 3.884 17 C -0.483 4.483 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.408 5.408 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.250 4.250 26 C -0.080 4.080 27 C 0.001 3.999 28 N -0.177 5.177 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.252 0.748 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -14.589 9.263 -1.305 17.330 hybrid contribution 1.202 -0.353 0.194 1.268 sum -13.387 8.909 -1.111 16.119 Atomic orbital electron populations 1.21632 0.78887 1.02768 1.02541 1.45649 1.07943 1.09159 1.73793 1.17913 0.85664 0.84161 0.76715 1.90792 1.68759 1.31287 1.49744 1.21372 0.94387 0.89997 0.98040 1.22066 0.93876 0.99699 0.98800 1.21809 0.93759 0.98075 0.90862 1.20566 0.92100 0.95840 1.06663 1.20873 0.88063 0.82866 0.73380 1.90811 1.67232 1.35879 1.45978 1.86764 1.26032 1.30734 1.82281 1.21826 0.73507 0.96868 1.01177 1.18640 1.16131 0.95167 0.94162 1.20539 0.98646 0.95024 0.95064 1.21300 1.05871 0.93019 0.98834 1.17701 0.87204 0.92524 0.90965 1.19703 1.30497 0.96141 1.01949 0.90103 1.25980 0.93774 0.99949 0.94748 1.69821 1.23466 1.36846 1.10623 0.86264 0.80363 0.80208 0.79677 1.19124 1.20171 1.18480 1.20966 1.11205 0.95685 0.97131 1.20392 0.97892 0.94574 0.95186 1.23357 0.88131 0.98912 0.89504 1.67657 1.10358 1.27919 1.11804 0.91895 0.91891 0.90152 0.74824 0.82507 0.82478 0.91797 0.91729 0.89286 0.86217 0.90564 0.88685 0.89258 0.79779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.71 -6.08 5.70 -67.88 -0.39 -6.46 16 3 C 0.57 6.35 7.82 -12.10 -0.09 6.26 16 4 O -0.53 -7.13 16.31 5.38 0.09 -7.04 16 5 C 0.10 1.10 6.75 -82.92 -0.56 0.54 16 6 C -0.12 -1.24 9.62 -39.11 -0.38 -1.61 16 7 C -0.02 -0.20 9.71 -38.87 -0.38 -0.58 16 8 C -0.15 -1.83 5.89 -104.74 -0.62 -2.45 16 9 C 0.50 7.62 7.91 34.69 0.27 7.90 16 10 O -0.51 -8.55 16.20 -19.23 -0.31 -8.86 16 11 O -0.34 -5.76 9.48 -40.45 -0.38 -6.14 16 12 C 0.14 2.44 5.59 36.01 0.20 2.64 16 13 C -0.24 -5.00 5.54 -104.33 -0.58 -5.57 16 14 C -0.07 -1.65 9.67 -39.66 -0.38 -2.03 16 15 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 16 C 0.12 3.01 5.58 -106.82 -0.60 2.42 16 17 C -0.45 -11.43 9.05 -37.74 -0.34 -11.77 16 18 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 19 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 20 N -0.78 -19.21 10.95 55.55 0.61 -18.60 16 21 Si 0.91 17.68 29.60 -169.99 -5.03 12.65 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 26 C -0.06 -1.32 9.67 -39.66 -0.38 -1.70 16 27 C 0.16 1.89 10.78 -17.16 -0.19 1.70 16 28 N -0.47 -5.25 9.52 -9.47 -0.09 -5.34 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.42 3.07 8.15 -40.82 -0.33 2.74 16 33 H 0.16 1.35 7.63 -52.49 -0.40 0.94 16 34 H 0.16 1.42 7.73 -52.49 -0.41 1.02 16 35 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 36 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.12 3.05 6.16 -52.48 -0.32 2.72 16 39 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 40 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.19 2.09 7.62 -52.49 -0.40 1.69 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -29.18 375.23 -8.82 -38.00 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.79 Total: 7.85 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -4.18 Total: -11.70 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.13 Total: -30.41 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.61 Total: -22.05 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.18 -8.82 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.246 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds