Wall clock time and date at job start Sat Apr 11 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00085 * 2 1 4 4 O 1.21488 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.48353 * 119.99885 * 179.97438 * 3 2 1 6 6 C 1.39297 * 119.56455 * 179.97438 * 5 3 2 7 7 C 1.38450 * 119.19535 * 179.97438 * 6 5 3 8 8 C 1.39918 * 118.34726 * 0.02562 * 7 6 5 9 9 C 1.47902 * 120.46520 * 179.97438 * 8 7 6 10 10 O 1.21449 * 119.99443 * 0.02562 * 9 8 7 11 11 O 1.34685 * 120.00141 * 179.97438 * 9 8 7 12 12 C 1.45203 * 117.00008 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47055 * 180.02562 * 12 11 9 14 14 C 1.38636 * 119.74910 * 269.72865 * 13 12 11 15 15 C 1.37613 * 120.24662 * 179.72471 * 14 13 12 16 16 C 1.40716 * 119.74384 * 0.56249 * 15 14 13 17 17 C 1.41404 * 120.23883 * 179.68556 * 16 15 14 18 18 H 1.08000 * 119.99335 * 204.41090 * 17 16 15 19 19 C 1.39933 * 120.00294 * 24.40951 * 17 16 15 20 20 N 1.30826 * 120.00408 * 17.84834 * 19 17 16 21 21 Si 1.86810 * 120.00100 * 197.84855 * 19 17 16 22 22 H 1.48497 * 109.47331 * 89.99959 * 21 19 17 23 23 H 1.48500 * 109.47019 * 210.00340 * 21 19 17 24 24 H 1.48506 * 109.46548 * 329.99647 * 21 19 17 25 25 C 1.40713 * 119.51242 * 359.71141 * 16 15 14 26 26 C 1.37618 * 119.74275 * 359.97438 * 25 16 15 27 27 C 1.39768 * 119.06864 * 0.02562 * 8 7 6 28 28 N 1.31407 * 120.71423 * 0.02562 * 27 8 7 29 29 H 1.09002 * 109.47261 * 300.00555 * 1 2 3 30 30 H 1.09004 * 109.47138 * 60.00633 * 1 2 3 31 31 H 1.08996 * 109.47577 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99916 * 179.97438 * 2 1 3 33 33 H 1.07995 * 120.40206 * 0.25357 * 6 5 3 34 34 H 1.07992 * 120.82357 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47037 * 299.99608 * 12 11 9 36 36 H 1.09000 * 109.47201 * 60.00204 * 12 11 9 37 37 H 1.08004 * 119.87238 * 359.97347 * 14 13 12 38 38 H 1.08006 * 120.12499 * 180.27822 * 15 14 13 39 39 H 0.97000 * 120.00287 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.12587 * 179.97438 * 25 16 15 41 41 H 1.07995 * 119.86890 * 179.97438 * 26 25 16 42 42 H 1.08000 * 119.64297 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6224 1.1671 0.0006 6 6 4.3097 2.3787 0.0000 7 6 5.6942 2.3697 0.0011 8 6 6.3506 1.1341 0.0022 9 6 7.8282 1.0698 0.0028 10 8 8.4804 2.0943 0.0028 11 8 8.4504 -0.1247 0.0043 12 6 9.9023 -0.1117 0.0054 13 6 10.4174 -1.5281 0.0064 14 6 10.6569 -2.1721 1.2105 15 6 11.1218 -3.4672 1.2235 16 6 11.3653 -4.1337 0.0083 17 6 11.8494 -5.4623 0.0094 18 1 12.3980 -5.8377 -0.8418 19 6 11.6176 -6.2906 1.1131 20 7 10.6828 -5.9847 1.9758 21 14 12.6431 -7.8332 1.3550 22 1 13.8439 -7.5074 2.1655 23 1 11.8340 -8.8600 2.0596 24 1 13.0663 -8.3586 0.0321 25 6 11.1240 -3.4682 -1.2078 26 6 10.6529 -2.1752 -1.1967 27 6 5.5903 -0.0387 0.0016 28 7 4.2772 0.0127 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.9500 -0.8400 0.0004 33 1 3.7693 3.3137 0.0033 34 1 6.2536 3.2935 0.0011 35 1 10.2617 0.4045 -0.8848 36 1 10.2604 0.4061 0.8952 37 1 10.4741 -1.6567 2.1419 38 1 11.3035 -3.9686 2.1627 39 1 10.5224 -6.5587 2.7411 40 1 11.3079 -3.9701 -2.1462 41 1 10.4674 -1.6623 -2.1288 42 1 6.0873 -0.9975 0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776115335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:30 Heat of formation + Delta-G solvation = -84.234891 kcal Electronic energy + Delta-G solvation = -26949.454642 eV Core-core repulsion = 22858.482415 eV Total energy + Delta-G solvation = -4090.972227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.11825 -41.22847 -40.00494 -39.41908 -37.57117 -35.83087 -35.68307 -33.93078 -33.13591 -32.43065 -31.21190 -29.19665 -28.38466 -26.34370 -25.26677 -24.83268 -22.95142 -22.77859 -21.84917 -21.71418 -19.72438 -19.26058 -19.07446 -18.39083 -17.56650 -17.49425 -17.12665 -16.57499 -16.50515 -16.15178 -16.10910 -15.67815 -15.52792 -15.26668 -14.92962 -14.52672 -14.37130 -14.08628 -13.99830 -13.84474 -13.76914 -13.75526 -13.51938 -13.10584 -12.86591 -12.70123 -12.59396 -12.14606 -11.91780 -11.70673 -11.63703 -11.47341 -11.28369 -11.25251 -11.04803 -10.83533 -10.59010 -10.19309 -9.42501 -9.32196 -8.68188 -6.38927 -1.07042 -0.04116 0.71091 1.01073 1.13173 1.38524 1.42357 1.52566 1.71553 1.76895 1.98023 2.19876 2.62072 2.70068 2.88109 3.45171 3.56171 3.63257 3.69533 3.83520 3.89725 4.08752 4.13666 4.41274 4.47465 4.50228 4.54717 4.57487 4.61522 4.72918 4.81651 4.93078 5.02831 5.12983 5.20726 5.27788 5.31272 5.35370 5.41422 5.66537 5.89635 6.07067 6.15780 6.18056 6.33620 6.48330 6.59014 6.65900 6.89728 6.97970 6.98358 8.28145 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.002104 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.563264 B =13307.456431 C =14891.269992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.705 5.705 3 C 0.567 3.433 4 O -0.558 6.558 5 C 0.096 3.904 6 C -0.117 4.117 7 C -0.007 4.007 8 C -0.160 4.160 9 C 0.511 3.489 10 O -0.526 6.526 11 O -0.350 6.350 12 C 0.142 3.858 13 C -0.230 4.230 14 C -0.078 4.078 15 C -0.195 4.195 16 C 0.088 3.912 17 C -0.492 4.492 18 H 0.079 0.921 19 C 0.036 3.964 20 N -0.816 5.816 21 Si 0.983 3.017 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.245 4.245 26 C -0.063 4.063 27 C 0.161 3.839 28 N -0.468 5.468 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.422 0.578 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.290 0.710 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 9.780 -1.796 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.355 5.355 3 C 0.351 3.649 4 O -0.436 6.436 5 C -0.042 4.042 6 C -0.138 4.138 7 C -0.033 4.033 8 C -0.163 4.163 9 C 0.356 3.644 10 O -0.417 6.417 11 O -0.267 6.267 12 C 0.070 3.930 13 C -0.231 4.231 14 C -0.097 4.097 15 C -0.214 4.214 16 C 0.085 3.915 17 C -0.521 4.521 18 H 0.097 0.903 19 C -0.181 4.181 20 N -0.441 5.441 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.265 4.265 26 C -0.081 4.081 27 C 0.001 3.999 28 N -0.179 5.179 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.259 0.741 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.575 9.918 -1.591 18.533 hybrid contribution 1.343 -0.396 0.247 1.422 sum -14.231 9.522 -1.344 17.176 Atomic orbital electron populations 1.21834 0.77411 1.04758 1.02245 1.45730 1.08997 1.08678 1.72138 1.17985 0.85694 0.84473 0.76757 1.90778 1.69163 1.32239 1.51463 1.21559 0.94628 0.90347 0.97669 1.22234 0.93650 1.00049 0.97868 1.21973 0.93883 0.97931 0.89487 1.20425 0.90344 0.96877 1.08651 1.21162 0.88920 0.81880 0.72446 1.90805 1.67803 1.36133 1.46965 1.86708 1.25256 1.31921 1.82768 1.21674 0.74212 0.94695 1.02419 1.18955 1.14349 0.96372 0.93434 1.20783 0.97902 0.94335 0.96641 1.21272 1.07753 0.94243 0.98157 1.18050 0.88211 0.93276 0.91952 1.19928 1.32148 0.96874 1.03108 0.90307 1.26791 0.94394 1.02899 0.93977 1.69867 1.24628 1.38368 1.11279 0.85189 0.78593 0.76275 0.79610 1.18709 1.19200 1.18139 1.21172 1.11679 0.96800 0.96831 1.20718 0.96737 0.93950 0.96720 1.23363 0.88294 0.98861 0.89427 1.67660 1.10039 1.28129 1.12091 0.92194 0.92140 0.87091 0.74138 0.80925 0.80917 0.90341 0.90850 0.87461 0.87862 0.89885 0.88036 0.86280 0.79754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.70 127.77 1.37 2.23 16 2 N -0.70 -10.88 5.70 -486.98 -2.78 -13.65 16 3 C 0.57 11.85 7.82 86.94 0.68 12.53 16 4 O -0.56 -14.41 16.31 -3.68 -0.06 -14.47 16 5 C 0.10 1.96 6.75 41.96 0.28 2.24 16 6 C -0.12 -2.11 9.62 22.58 0.22 -1.89 16 7 C -0.01 -0.13 9.71 22.73 0.22 0.09 16 8 C -0.16 -3.65 5.89 -19.94 -0.12 -3.77 16 9 C 0.51 14.51 7.91 70.38 0.56 15.06 16 10 O -0.53 -16.61 16.20 20.00 0.32 -16.28 16 11 O -0.35 -11.17 9.48 -55.94 -0.53 -11.70 16 12 C 0.14 4.73 5.59 71.24 0.40 5.13 16 13 C -0.23 -9.31 5.54 -19.67 -0.11 -9.42 16 14 C -0.08 -3.47 9.67 22.22 0.21 -3.25 16 15 C -0.19 -9.91 8.70 22.73 0.20 -9.71 16 16 C 0.09 4.58 5.58 -21.29 -0.12 4.46 16 17 C -0.49 -25.60 9.05 23.46 0.21 -25.39 16 18 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 19 C 0.04 1.73 5.14 85.25 0.44 2.17 16 20 N -0.82 -41.17 10.95 21.82 0.24 -40.93 16 21 Si 0.98 36.66 29.60 68.60 2.03 38.69 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 23 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 24 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 25 C -0.25 -11.55 9.80 22.73 0.22 -11.33 16 26 C -0.06 -2.62 9.67 22.22 0.21 -2.40 16 27 C 0.16 3.55 10.78 85.13 0.92 4.47 16 28 N -0.47 -9.86 9.52 -183.86 -1.75 -11.61 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.42 5.50 8.15 -92.71 -0.76 4.75 16 33 H 0.17 2.57 7.63 -2.91 -0.02 2.55 16 34 H 0.17 2.67 7.73 -2.91 -0.02 2.64 16 35 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 36 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 37 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 39 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 40 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 42 H 0.19 4.01 7.62 -2.91 -0.02 3.99 16 Total: -1.00 -63.46 375.23 3.59 -59.87 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.32 Total: 28.89 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 5.80 Total: -18.79 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -4.29 Total: -66.20 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.27 Total: -42.46 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -63.46 3.59 -59.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.369 kcal (2) G-P(sol) polarization free energy of solvation -63.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds