Wall clock time and date at job start Sat Apr 11 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34766 * 117.00221 * 2 1 4 4 O 1.21525 * 119.99445 * 0.02562 * 3 2 1 5 5 C 1.47283 * 120.00382 * 179.97438 * 3 2 1 6 6 C 1.39807 * 120.21242 * 5.97765 * 5 3 2 7 7 C 1.37723 * 119.91764 * 180.29705 * 6 5 3 8 8 C 1.38629 * 120.36127 * 359.68286 * 7 6 5 9 9 C 1.37942 * 120.43925 * 0.02562 * 8 7 6 10 10 C 1.38967 * 120.06821 * 0.02562 * 9 8 7 11 11 N 1.38828 * 120.17860 * 180.02562 * 10 9 8 12 12 N 1.40098 * 120.00113 * 5.83668 * 11 10 9 13 13 C 1.34780 * 119.99843 * 179.97438 * 12 11 10 14 14 O 1.21551 * 120.00261 * 0.02562 * 13 12 11 15 15 C 1.47890 * 119.99777 * 179.97438 * 13 12 11 16 16 C 1.39915 * 120.02493 * 359.72523 * 15 13 12 17 17 C 1.38338 * 120.35800 * 180.25485 * 16 15 13 18 18 C 1.37754 * 120.41018 * 0.04488 * 17 16 15 19 19 C 1.40750 * 120.04065 * 359.95285 * 18 17 16 20 20 C 1.41436 * 120.17510 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00041 * 149.94823 * 20 19 18 22 22 C 1.39938 * 120.00267 * 329.94225 * 20 19 18 23 23 N 1.30822 * 120.00051 * 164.15396 * 22 20 19 24 24 Si 1.86800 * 119.99734 * 344.15865 * 22 20 19 25 25 H 1.48500 * 109.46794 * 86.72962 * 24 22 20 26 26 H 1.48502 * 109.47072 * 206.72654 * 24 22 20 27 27 H 1.48501 * 109.47238 * 326.72905 * 24 22 20 28 28 C 1.39000 * 120.02304 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47224 * 60.00191 * 1 2 3 30 30 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47564 * 299.99675 * 1 2 3 32 32 H 1.08000 * 120.03956 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.81726 * 179.70340 * 7 6 5 34 34 H 1.08006 * 119.78087 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.96959 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00177 * 185.83137 * 11 10 9 37 37 H 0.97000 * 120.00250 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.82605 * 0.24969 * 16 15 13 39 39 H 1.07995 * 119.79548 * 180.02562 * 17 16 15 40 40 H 1.08003 * 119.97787 * 179.97438 * 18 17 16 41 41 H 0.96996 * 120.00447 * 180.02562 * 23 22 20 42 42 H 1.08001 * 120.20164 * 359.69795 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5347 1.2779 0.0006 6 6 4.3002 0.1147 -0.1247 7 6 5.6752 0.1932 -0.1173 8 6 6.3062 1.4213 0.0073 9 6 5.5654 2.5788 0.1258 10 6 4.1770 2.5205 0.1215 11 7 3.4292 3.6841 0.2401 12 7 4.0686 4.9306 0.2414 13 6 3.3425 6.0603 0.3560 14 8 2.1330 5.9976 0.4587 15 6 4.0176 7.3762 0.3580 16 6 5.4104 7.4486 0.2467 17 6 6.0495 8.6756 0.2531 18 6 5.3225 9.8398 0.3700 19 6 3.9205 9.7867 0.4829 20 6 3.1712 10.9803 0.6025 21 1 2.1633 11.0261 0.2172 22 6 3.7357 12.1020 1.2201 23 7 3.1879 13.2797 1.0642 24 14 5.2717 11.9176 2.2671 25 1 6.4748 12.0110 1.4017 26 1 5.3093 12.9979 3.2854 27 1 5.2521 10.5973 2.9466 28 6 3.2693 8.5415 0.4767 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8139 -0.8447 -0.2219 33 1 6.2649 -0.7068 -0.2093 34 1 7.3851 1.4720 0.0116 35 1 6.0649 3.5315 0.2220 36 1 2.4639 3.6341 0.3219 37 1 5.0339 4.9807 0.1599 38 1 5.9899 6.5418 0.1554 39 1 7.1249 8.7209 0.1663 40 1 5.8286 10.7939 0.3746 41 1 3.5793 14.0572 1.4920 42 1 2.1940 8.4903 0.5628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777772589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:39 Heat of formation + Delta-G solvation = -26.073775 kcal Electronic energy + Delta-G solvation = -27826.922885 eV Core-core repulsion = 23738.472713 eV Total energy + Delta-G solvation = -4088.450172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.02454 -39.82693 -38.95293 -37.50352 -36.76368 -35.75876 -33.81344 -32.40655 -31.67977 -30.63326 -30.14356 -28.58230 -27.67478 -25.29841 -24.33462 -23.60676 -22.03271 -21.65424 -20.80359 -20.22574 -18.85743 -18.05886 -17.53117 -17.12455 -16.88747 -16.56628 -16.33127 -15.54479 -15.16697 -14.93750 -14.81089 -14.69925 -14.24527 -13.96319 -13.86854 -13.68869 -13.65538 -13.14405 -12.91278 -12.83516 -12.53660 -12.17035 -12.14124 -11.82244 -11.62933 -11.59227 -11.15748 -11.06943 -10.88267 -10.63214 -10.60313 -10.08372 -9.83309 -9.66166 -9.49359 -9.36327 -9.22901 -8.03786 -7.88777 -7.38197 -7.06894 -4.63990 0.52568 1.24936 1.76965 1.98340 2.32149 2.41946 2.46219 2.99536 3.12155 3.17573 3.42777 3.59749 3.85899 4.21486 4.39074 4.42181 4.54506 4.73799 4.85874 4.95331 5.04991 5.08257 5.17841 5.22420 5.26137 5.37957 5.60646 5.72972 5.82255 5.88900 6.01981 6.05109 6.24930 6.28000 6.49360 6.53045 6.55904 6.79173 6.89666 7.08878 7.25881 7.36146 7.45141 7.49512 7.65923 7.80932 7.86876 8.20225 8.42782 8.54142 8.62871 9.95096 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002422 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.418523 B =11556.450994 C =12804.564090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.517 3.483 4 O -0.516 6.516 5 C -0.221 4.221 6 C -0.004 4.004 7 C -0.203 4.203 8 C -0.022 4.022 9 C -0.220 4.220 10 C 0.286 3.714 11 N -0.509 5.509 12 N -0.534 5.534 13 C 0.564 3.436 14 O -0.536 6.536 15 C -0.098 4.098 16 C -0.221 4.221 17 C -0.077 4.077 18 C -0.228 4.228 19 C 0.083 3.917 20 C -0.438 4.438 21 H 0.095 0.905 22 C 0.081 3.919 23 N -0.801 5.801 24 Si 0.917 3.083 25 H -0.265 1.265 26 H -0.290 1.290 27 H -0.247 1.247 28 C -0.130 4.130 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.447 0.553 37 H 0.421 0.579 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.288 0.712 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.884 -24.280 -1.158 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.365 3.635 4 O -0.406 6.406 5 C -0.229 4.229 6 C -0.023 4.023 7 C -0.223 4.223 8 C -0.041 4.041 9 C -0.243 4.243 10 C 0.172 3.828 11 N -0.239 5.239 12 N -0.283 5.283 13 C 0.355 3.645 14 O -0.412 6.412 15 C -0.103 4.103 16 C -0.241 4.241 17 C -0.096 4.096 18 C -0.248 4.248 19 C 0.080 3.920 20 C -0.466 4.466 21 H 0.113 0.887 22 C -0.139 4.139 23 N -0.425 5.425 24 Si 0.744 3.256 25 H -0.192 1.192 26 H -0.218 1.218 27 H -0.170 1.170 28 C -0.151 4.151 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.304 0.696 37 H 0.265 0.735 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.636 -23.494 -1.035 23.970 hybrid contribution 0.617 0.186 0.401 0.759 sum 5.254 -23.308 -0.634 23.901 Atomic orbital electron populations 1.23307 0.75830 1.03718 1.02965 1.86524 1.23652 1.32208 1.84523 1.21067 0.88750 0.81441 0.72233 1.90585 1.66454 1.35393 1.48122 1.18237 0.88737 0.93115 1.22836 1.21158 0.93727 0.96569 0.90822 1.20854 0.94131 0.98006 1.09346 1.21135 0.99985 0.91645 0.91369 1.20488 0.90821 0.99946 1.13038 1.17734 0.91263 0.83857 0.89981 1.44702 1.09933 0.93803 1.75511 1.45208 1.09491 0.96197 1.77448 1.19042 0.86952 0.83012 0.75526 1.90760 1.13895 1.86882 1.49659 1.19123 0.93817 0.89974 1.07353 1.20342 0.92307 0.96572 1.14875 1.20504 0.97956 0.92484 0.98628 1.21380 0.94828 0.97357 1.11210 1.17696 0.91621 0.92657 0.90044 1.19550 1.02256 0.92824 1.31989 0.88705 1.26197 0.98192 0.94002 0.95460 1.69661 1.38781 0.99689 1.34349 0.86306 0.80596 0.79416 0.79320 1.19173 1.21752 1.17036 1.21273 0.99208 0.90220 1.04383 0.91668 0.87942 0.91653 0.84471 0.85398 0.85185 0.85432 0.69573 0.73546 0.88735 0.87998 0.87189 0.90146 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.73 9.83 -40.67 -0.40 -4.13 16 3 C 0.52 6.80 7.87 34.41 0.27 7.07 16 4 O -0.52 -8.37 13.45 -19.29 -0.26 -8.63 16 5 C -0.22 -2.65 5.89 -104.82 -0.62 -3.27 16 6 C 0.00 -0.04 9.61 -39.18 -0.38 -0.41 16 7 C -0.20 -1.55 10.02 -39.63 -0.40 -1.94 16 8 C -0.02 -0.18 10.03 -39.55 -0.40 -0.57 16 9 C -0.22 -2.28 9.45 -39.42 -0.37 -2.65 16 10 C 0.29 3.73 6.72 -83.61 -0.56 3.17 16 11 N -0.51 -8.15 6.27 32.55 0.20 -7.95 16 12 N -0.53 -8.66 6.16 30.54 0.19 -8.47 16 13 C 0.56 11.40 7.89 -12.31 -0.10 11.30 16 14 O -0.54 -12.58 16.17 5.32 0.09 -12.49 16 15 C -0.10 -2.06 5.87 -105.04 -0.62 -2.67 16 16 C -0.22 -4.09 9.55 -38.92 -0.37 -4.46 16 17 C -0.08 -1.51 10.01 -39.72 -0.40 -1.91 16 18 C -0.23 -5.15 7.28 -38.81 -0.28 -5.43 16 19 C 0.08 2.04 5.12 -106.87 -0.55 1.49 16 20 C -0.44 -11.56 9.58 -37.73 -0.36 -11.93 16 21 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 22 C 0.08 2.06 5.43 -17.35 -0.09 1.97 16 23 N -0.80 -20.76 13.93 55.55 0.77 -19.99 16 24 Si 0.92 19.95 24.56 -169.99 -4.17 15.78 16 25 H -0.27 -5.49 6.30 56.52 0.36 -5.14 16 26 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.25 -5.50 7.08 56.52 0.40 -5.10 16 28 C -0.13 -3.09 9.34 -38.44 -0.36 -3.44 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.14 0.95 7.62 -52.49 -0.40 0.55 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.13 1.16 6.24 -52.49 -0.33 0.84 16 36 H 0.45 8.13 4.58 -182.65 -0.84 7.30 16 37 H 0.42 5.53 4.64 -182.60 -0.85 4.69 16 38 H 0.09 1.36 6.38 -52.49 -0.33 1.03 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.11 2.46 4.32 -52.48 -0.23 2.23 16 41 H 0.29 6.72 8.30 -40.82 -0.34 6.39 16 42 H 0.12 2.85 7.64 -52.49 -0.40 2.45 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -30.85 357.43 -8.22 -39.07 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -5.51 Total: 13.76 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -4.51 Total: -12.34 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 1.17 Total: -36.40 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.57 Total: -25.25 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.17 Total: 15.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.85 -8.22 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777772589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.996 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds