Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34766 * 117.00221 * 2 1 4 4 O 1.21525 * 119.99445 * 0.02562 * 3 2 1 5 5 C 1.47283 * 120.00382 * 179.97438 * 3 2 1 6 6 C 1.39807 * 120.21242 * 5.97765 * 5 3 2 7 7 C 1.37723 * 119.91764 * 180.29705 * 6 5 3 8 8 C 1.38629 * 120.36127 * 359.68286 * 7 6 5 9 9 C 1.37942 * 120.43925 * 0.02562 * 8 7 6 10 10 C 1.38967 * 120.06821 * 0.02562 * 9 8 7 11 11 N 1.38828 * 120.17860 * 180.02562 * 10 9 8 12 12 N 1.40098 * 120.00113 * 5.83668 * 11 10 9 13 13 C 1.34780 * 119.99843 * 179.97438 * 12 11 10 14 14 O 1.21551 * 120.00261 * 0.02562 * 13 12 11 15 15 C 1.47890 * 119.99777 * 179.97438 * 13 12 11 16 16 C 1.39915 * 120.02493 * 359.72523 * 15 13 12 17 17 C 1.38338 * 120.35800 * 180.25485 * 16 15 13 18 18 C 1.37754 * 120.41018 * 0.04488 * 17 16 15 19 19 C 1.40750 * 120.04065 * 359.95285 * 18 17 16 20 20 C 1.41436 * 120.17510 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00041 * 149.94823 * 20 19 18 22 22 C 1.39938 * 120.00267 * 329.94225 * 20 19 18 23 23 N 1.30822 * 120.00051 * 164.15396 * 22 20 19 24 24 Si 1.86800 * 119.99734 * 344.15865 * 22 20 19 25 25 H 1.48500 * 109.46794 * 86.72962 * 24 22 20 26 26 H 1.48502 * 109.47072 * 206.72654 * 24 22 20 27 27 H 1.48501 * 109.47238 * 326.72905 * 24 22 20 28 28 C 1.39000 * 120.02304 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47224 * 60.00191 * 1 2 3 30 30 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47564 * 299.99675 * 1 2 3 32 32 H 1.08000 * 120.03956 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.81726 * 179.70340 * 7 6 5 34 34 H 1.08006 * 119.78087 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.96959 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00177 * 185.83137 * 11 10 9 37 37 H 0.97000 * 120.00250 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.82605 * 0.24969 * 16 15 13 39 39 H 1.07995 * 119.79548 * 180.02562 * 17 16 15 40 40 H 1.08003 * 119.97787 * 179.97438 * 18 17 16 41 41 H 0.96996 * 120.00447 * 180.02562 * 23 22 20 42 42 H 1.08001 * 120.20164 * 359.69795 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5347 1.2779 0.0006 6 6 4.3002 0.1147 -0.1247 7 6 5.6752 0.1932 -0.1173 8 6 6.3062 1.4213 0.0073 9 6 5.5654 2.5788 0.1258 10 6 4.1770 2.5205 0.1215 11 7 3.4292 3.6841 0.2401 12 7 4.0686 4.9306 0.2414 13 6 3.3425 6.0603 0.3560 14 8 2.1330 5.9976 0.4587 15 6 4.0176 7.3762 0.3580 16 6 5.4104 7.4486 0.2467 17 6 6.0495 8.6756 0.2531 18 6 5.3225 9.8398 0.3700 19 6 3.9205 9.7867 0.4829 20 6 3.1712 10.9803 0.6025 21 1 2.1633 11.0261 0.2172 22 6 3.7357 12.1020 1.2201 23 7 3.1879 13.2797 1.0642 24 14 5.2717 11.9176 2.2671 25 1 6.4748 12.0110 1.4017 26 1 5.3093 12.9979 3.2854 27 1 5.2521 10.5973 2.9466 28 6 3.2693 8.5415 0.4767 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8139 -0.8447 -0.2219 33 1 6.2649 -0.7068 -0.2093 34 1 7.3851 1.4720 0.0116 35 1 6.0649 3.5315 0.2220 36 1 2.4639 3.6341 0.3219 37 1 5.0339 4.9807 0.1599 38 1 5.9899 6.5418 0.1554 39 1 7.1249 8.7209 0.1663 40 1 5.8286 10.7939 0.3746 41 1 3.5793 14.0572 1.4920 42 1 2.1940 8.4903 0.5628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777772589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -45.698439 kcal Electronic energy + Delta-G solvation = -27827.773874 eV Core-core repulsion = 23738.472713 eV Total energy + Delta-G solvation = -4089.301161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99859 -41.21724 -39.96565 -39.12771 -37.73372 -36.98886 -35.62887 -33.68119 -32.58746 -32.16557 -31.75172 -29.55634 -28.48989 -27.10314 -25.22836 -25.00230 -23.08970 -22.71314 -22.46971 -21.58590 -20.15003 -19.24729 -18.70697 -18.32410 -18.02863 -17.80102 -17.48925 -16.98377 -16.53235 -16.37697 -16.06005 -15.74904 -15.53278 -15.35067 -14.87879 -14.77471 -14.61146 -14.54764 -14.42758 -14.15921 -13.86970 -13.42807 -13.23950 -12.92689 -12.86661 -12.77676 -12.66486 -12.35780 -12.27457 -11.91701 -11.77787 -11.62733 -11.55621 -11.36879 -10.95468 -10.56837 -10.10252 -9.71978 -9.66326 -8.92561 -8.44920 -6.59477 -0.29162 0.03305 0.52968 0.70151 0.76577 1.24903 1.41420 1.43302 1.47345 1.64487 1.80224 2.10492 2.59854 2.82622 3.02005 3.39264 3.61960 3.65327 3.80972 4.09981 4.21077 4.25318 4.27087 4.32760 4.42107 4.44399 4.51005 4.56572 4.67608 4.80572 4.87068 4.94579 5.04306 5.10040 5.16697 5.34280 5.38401 5.51024 5.56215 5.58816 5.64089 5.80577 5.90938 6.06855 6.19829 6.28615 6.46078 6.60549 6.66670 6.70225 7.13016 8.16524 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002422 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.418523 B =11556.450994 C =12804.564090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.511 3.489 4 O -0.556 6.556 5 C -0.236 4.236 6 C -0.005 4.005 7 C -0.186 4.186 8 C -0.013 4.013 9 C -0.226 4.226 10 C 0.255 3.745 11 N -0.534 5.534 12 N -0.508 5.508 13 C 0.560 3.440 14 O -0.582 6.582 15 C -0.101 4.101 16 C -0.182 4.182 17 C -0.074 4.074 18 C -0.228 4.228 19 C 0.068 3.932 20 C -0.487 4.487 21 H 0.048 0.952 22 C 0.042 3.958 23 N -0.850 5.850 24 Si 0.973 3.027 25 H -0.237 1.237 26 H -0.279 1.279 27 H -0.254 1.254 28 C -0.164 4.164 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.057 0.943 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.141 0.859 36 H 0.435 0.565 37 H 0.436 0.564 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.116 0.884 41 H 0.296 0.704 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 -28.664 -1.147 30.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.361 3.639 4 O -0.449 6.449 5 C -0.243 4.243 6 C -0.024 4.024 7 C -0.206 4.206 8 C -0.031 4.031 9 C -0.249 4.249 10 C 0.146 3.854 11 N -0.267 5.267 12 N -0.257 5.257 13 C 0.350 3.650 14 O -0.462 6.462 15 C -0.106 4.106 16 C -0.202 4.202 17 C -0.092 4.092 18 C -0.248 4.248 19 C 0.065 3.935 20 C -0.517 4.517 21 H 0.066 0.934 22 C -0.173 4.173 23 N -0.476 5.476 24 Si 0.795 3.205 25 H -0.162 1.162 26 H -0.206 1.206 27 H -0.178 1.178 28 C -0.185 4.185 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.159 0.841 36 H 0.289 0.711 37 H 0.283 0.717 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.133 0.867 41 H 0.106 0.894 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.424 -27.976 -1.052 29.873 hybrid contribution -1.064 1.031 0.289 1.510 sum 9.360 -26.945 -0.762 28.534 Atomic orbital electron populations 1.23590 0.74510 1.06050 1.02324 1.86518 1.24948 1.30876 1.83916 1.21514 0.89564 0.81454 0.71322 1.90575 1.67432 1.36747 1.50115 1.18492 0.88272 0.94040 1.23531 1.21472 0.94523 0.96207 0.90185 1.21361 0.93610 0.99396 1.06226 1.21623 1.01787 0.90686 0.89034 1.20801 0.89603 1.01735 1.12779 1.18157 0.92451 0.83042 0.91725 1.44781 1.09709 0.93886 1.78334 1.44721 1.09755 0.96027 1.75175 1.18878 0.86450 0.83875 0.75818 1.90742 1.15910 1.87508 1.52025 1.19296 0.95165 0.89453 1.06647 1.21012 0.91041 0.98844 1.09283 1.21072 1.00491 0.91107 0.96542 1.21622 0.93648 0.99261 1.10232 1.17757 0.93077 0.91926 0.90698 1.19473 1.01201 0.95258 1.35748 0.93380 1.26971 1.01233 0.93166 0.95890 1.69703 1.41006 1.00508 1.36384 0.85473 0.77864 0.79099 0.78108 1.16177 1.20565 1.17787 1.21163 0.98388 0.91655 1.07245 0.92316 0.84042 0.92425 0.82487 0.81803 0.81416 0.84105 0.71133 0.71686 0.83060 0.82697 0.86690 0.89352 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.35 -7.09 9.83 -56.77 -0.56 -7.65 16 3 C 0.51 13.59 7.87 70.20 0.55 14.14 16 4 O -0.56 -19.09 13.45 19.76 0.27 -18.83 16 5 C -0.24 -5.33 5.89 -19.99 -0.12 -5.44 16 6 C -0.01 -0.08 9.61 22.53 0.22 0.14 16 7 C -0.19 -1.81 10.02 22.24 0.22 -1.58 16 8 C -0.01 -0.13 10.03 22.29 0.22 0.09 16 9 C -0.23 -3.79 9.45 22.37 0.21 -3.58 16 10 C 0.26 6.26 6.72 38.74 0.26 6.52 16 11 N -0.53 -17.09 6.27 -50.93 -0.32 -17.41 16 12 N -0.51 -15.77 6.16 -175.57 -1.08 -16.85 16 13 C 0.56 22.88 7.89 86.80 0.68 23.57 16 14 O -0.58 -29.05 16.17 -3.88 -0.06 -29.12 16 15 C -0.10 -4.19 5.87 -20.13 -0.12 -4.31 16 16 C -0.18 -5.91 9.55 22.70 0.22 -5.69 16 17 C -0.07 -2.52 10.01 22.18 0.22 -2.30 16 18 C -0.23 -9.88 7.28 22.77 0.17 -9.71 16 19 C 0.07 3.49 5.12 -21.32 -0.11 3.38 16 20 C -0.49 -28.04 9.58 23.47 0.22 -27.82 16 21 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 22 C 0.04 2.23 5.43 85.25 0.46 2.69 16 23 N -0.85 -46.92 13.93 21.82 0.30 -46.62 16 24 Si 0.97 40.98 24.56 68.60 1.68 42.66 16 25 H -0.24 -8.85 6.30 99.48 0.63 -8.23 16 26 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.25 -10.87 7.08 99.48 0.70 -10.17 16 28 C -0.16 -8.21 9.34 23.01 0.21 -8.00 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.16 1.57 7.62 -2.91 -0.02 1.55 16 33 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 34 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 35 H 0.14 1.86 6.24 -2.91 -0.02 1.84 16 36 H 0.43 16.58 4.58 -214.12 -0.98 15.60 16 37 H 0.44 9.81 4.64 -213.32 -0.99 8.82 16 38 H 0.15 3.22 6.38 -2.91 -0.02 3.20 16 39 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 40 H 0.12 4.85 4.32 -2.91 -0.01 4.84 16 41 H 0.30 14.54 8.30 -92.71 -0.77 13.77 16 42 H 0.09 4.80 7.64 -2.91 -0.02 4.78 16 Total: -1.00 -77.76 357.43 4.02 -73.74 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.95 Total: 36.32 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.73 Total: -16.26 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.10 Total: -80.88 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -0.36 Total: -55.59 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.68 Total: 42.66 kcal Total: -77.76 4.02 -73.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777772589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.042 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds