Wall clock time and date at job start Sat Apr 11 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34759 * 117.00021 * 2 1 4 4 O 1.21529 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.47292 * 119.99983 * 180.02562 * 3 2 1 6 6 C 1.39792 * 120.21404 * 354.34763 * 5 3 2 7 7 C 1.37723 * 119.92317 * 180.02562 * 6 5 3 8 8 C 1.38629 * 120.36171 * 359.97438 * 7 6 5 9 9 C 1.37948 * 120.43280 * 0.02562 * 8 7 6 10 10 C 1.38959 * 120.07283 * 359.97438 * 9 8 7 11 11 N 1.38835 * 120.18419 * 179.97438 * 10 9 8 12 12 N 1.40097 * 119.99531 * 6.19397 * 11 10 9 13 13 C 1.34781 * 119.99593 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.47642 * 119.99632 * 180.02562 * 13 12 11 16 16 C 1.40014 * 119.89680 * 359.73050 * 15 13 12 17 17 C 1.36324 * 120.10388 * 179.71701 * 16 15 13 18 18 C 1.40891 * 119.89006 * 0.55518 * 17 16 15 19 19 C 1.41113 * 120.10070 * 179.69638 * 18 17 16 20 20 H 1.07994 * 119.99910 * 154.12840 * 19 18 17 21 21 C 1.40232 * 119.99906 * 334.12709 * 19 18 17 22 22 N 1.30640 * 120.00010 * 339.43331 * 21 19 18 23 23 Si 1.86803 * 119.99631 * 159.43085 * 21 19 18 24 24 H 1.48502 * 109.46627 * 94.75656 * 23 21 19 25 25 H 1.48500 * 109.46845 * 214.75444 * 23 21 19 26 26 H 1.48496 * 109.47319 * 334.75735 * 23 21 19 27 27 C 1.40883 * 119.79467 * 359.71833 * 18 17 16 28 28 C 1.36316 * 119.89201 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46787 * 299.99975 * 1 2 3 31 31 H 1.08991 * 109.47140 * 60.00296 * 1 2 3 32 32 H 1.08003 * 120.03934 * 0.02562 * 6 5 3 33 33 H 1.08003 * 119.82093 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.78631 * 180.02562 * 8 7 6 35 35 H 1.08008 * 119.96356 * 179.72432 * 9 8 7 36 36 H 0.96991 * 120.00199 * 186.19283 * 11 10 9 37 37 H 0.97003 * 120.00630 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.94944 * 359.97438 * 16 15 13 39 39 H 1.07995 * 120.05292 * 180.24805 * 17 16 15 40 40 H 0.97001 * 120.00300 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.05148 * 179.97438 * 27 18 17 42 42 H 1.08005 * 119.94665 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5347 1.2778 -0.0006 6 6 4.3002 0.1141 0.1179 7 6 5.6751 0.1931 0.1172 8 6 6.3063 1.4218 -0.0010 9 6 5.5654 2.5794 -0.1187 10 6 4.1771 2.5206 -0.1201 11 7 3.4292 3.6843 -0.2379 12 7 4.0688 4.9058 -0.4858 13 6 3.3427 6.0355 -0.6007 14 8 2.1328 5.9945 -0.4887 15 6 4.0168 7.3228 -0.8625 16 6 5.4108 7.3683 -0.9854 17 6 6.0370 8.5536 -1.2328 18 6 5.2801 9.7359 -1.3533 19 6 5.9243 10.9663 -1.6030 20 1 5.3907 11.7647 -2.0970 21 6 7.2574 11.1522 -1.2097 22 7 7.7784 10.3895 -0.2858 23 14 8.2883 12.4907 -2.0068 24 1 8.2369 13.7180 -1.1724 25 1 9.6950 12.0291 -2.1224 26 1 7.7525 12.7888 -3.3593 27 6 3.8782 9.6859 -1.2231 28 6 3.2604 8.4949 -0.9819 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 3.8139 -0.8459 0.2098 33 1 6.2649 -0.7070 0.2084 34 1 7.3851 1.4729 -0.0009 35 1 6.0650 3.5331 -0.2059 36 1 2.4640 3.6516 -0.1486 37 1 5.0342 4.9385 -0.5755 38 1 5.9905 6.4623 -0.8881 39 1 7.1119 8.5872 -1.3315 40 1 8.7006 10.5178 -0.0140 41 1 3.2940 10.5897 -1.3142 42 1 2.1857 8.4556 -0.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780739398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:43 Heat of formation + Delta-G solvation = -34.092466 kcal Electronic energy + Delta-G solvation = -27740.188095 eV Core-core repulsion = 23651.390207 eV Total energy + Delta-G solvation = -4088.797888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.90679 -39.56599 -38.74102 -37.29791 -36.66626 -35.52100 -33.98619 -32.20562 -31.52150 -30.24139 -29.58077 -28.50476 -27.63336 -25.82864 -24.20563 -22.81317 -21.73901 -21.42941 -21.03778 -19.88703 -18.54609 -17.77843 -17.60941 -17.03293 -16.96529 -16.51228 -16.13512 -15.50064 -15.04356 -14.68269 -14.55046 -14.37252 -14.09351 -13.79705 -13.74179 -13.57235 -13.30172 -13.00133 -12.88228 -12.45816 -12.23935 -12.11375 -12.06334 -11.63924 -11.46926 -11.40495 -11.34946 -11.04957 -11.00334 -10.73704 -10.50533 -10.18582 -9.66000 -9.43815 -9.30378 -9.25941 -9.22860 -7.84938 -7.70707 -7.20915 -7.14534 -4.69535 0.64671 1.39747 2.10291 2.23548 2.42176 2.54995 2.83726 2.89770 2.93158 2.96201 3.63253 3.67772 3.77099 4.43749 4.44097 4.54529 4.67231 4.86017 4.91080 5.00105 5.19395 5.29303 5.30438 5.44525 5.44856 5.68141 5.73727 5.89107 5.96235 6.12024 6.17085 6.20648 6.37484 6.64046 6.66862 6.72561 6.86748 6.97831 7.07505 7.32406 7.49727 7.56864 7.59902 7.74920 7.86558 7.95933 8.08884 8.28056 8.51940 8.63470 8.91778 9.77391 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002314 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.229487 B =12098.127328 C =13473.352755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.517 3.483 4 O -0.517 6.517 5 C -0.225 4.225 6 C -0.004 4.004 7 C -0.206 4.206 8 C -0.022 4.022 9 C -0.220 4.220 10 C 0.286 3.714 11 N -0.506 5.506 12 N -0.543 5.543 13 C 0.572 3.428 14 O -0.565 6.565 15 C -0.280 4.280 16 C -0.062 4.062 17 C -0.176 4.176 18 C 0.131 3.869 19 C -0.439 4.439 20 H 0.087 0.913 21 C 0.076 3.924 22 N -0.765 5.765 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.272 1.272 26 H -0.256 1.256 27 C -0.237 4.237 28 C -0.015 4.015 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.447 0.553 37 H 0.418 0.582 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.289 0.711 41 H 0.101 0.899 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 -18.086 0.635 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.366 3.634 4 O -0.407 6.407 5 C -0.234 4.234 6 C -0.023 4.023 7 C -0.227 4.227 8 C -0.041 4.041 9 C -0.243 4.243 10 C 0.171 3.829 11 N -0.236 5.236 12 N -0.292 5.292 13 C 0.368 3.632 14 O -0.445 6.445 15 C -0.286 4.286 16 C -0.081 4.081 17 C -0.195 4.195 18 C 0.128 3.872 19 C -0.466 4.466 20 H 0.105 0.895 21 C -0.147 4.147 22 N -0.387 5.387 23 Si 0.735 3.265 24 H -0.191 1.191 25 H -0.196 1.196 26 H -0.180 1.180 27 C -0.256 4.256 28 C -0.035 4.035 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.304 0.696 37 H 0.261 0.739 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.201 -17.618 0.832 17.678 hybrid contribution 0.561 0.605 -0.163 0.841 sum -0.640 -17.013 0.668 17.038 Atomic orbital electron populations 1.23291 0.75986 1.03633 1.02895 1.86525 1.23536 1.32285 1.84610 1.21082 0.88771 0.81364 0.72200 1.90563 1.66453 1.35371 1.48318 1.18210 0.88625 0.92959 1.23577 1.21124 0.93717 0.96490 0.90956 1.20824 0.94113 0.97944 1.09781 1.21131 0.99950 0.91660 0.91369 1.20507 0.90889 0.99912 1.13015 1.17754 0.91288 0.83907 0.89922 1.44750 1.09963 0.95982 1.72883 1.45298 1.09314 0.98063 1.76554 1.18857 0.86692 0.82322 0.75332 1.90690 1.14214 1.86304 1.53281 1.18559 0.93356 0.90614 1.26064 1.20414 0.92438 0.96912 0.98324 1.20872 0.99720 0.91275 1.07659 1.17789 0.91206 0.93021 0.85226 1.19877 0.95824 0.99368 1.31539 0.89452 1.26125 0.98281 0.97296 0.92984 1.69745 1.15469 1.34200 1.19317 0.86222 0.78864 0.80428 0.80989 1.19148 1.19632 1.17965 1.20717 0.94943 0.96265 1.13695 1.20336 0.97935 0.91358 0.93837 0.88003 0.91733 0.91713 0.84614 0.85518 0.85252 0.85406 0.69639 0.73919 0.89472 0.86491 0.90025 0.88082 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.37 16 2 O -0.35 -4.02 9.83 -40.65 -0.40 -4.42 16 3 C 0.52 7.32 7.87 34.41 0.27 7.59 16 4 O -0.52 -8.89 13.44 -19.29 -0.26 -9.15 16 5 C -0.23 -2.98 5.89 -104.82 -0.62 -3.60 16 6 C 0.00 -0.04 9.61 -39.19 -0.38 -0.42 16 7 C -0.21 -1.83 10.02 -39.63 -0.40 -2.23 16 8 C -0.02 -0.21 10.03 -39.54 -0.40 -0.60 16 9 C -0.22 -2.66 9.45 -39.42 -0.37 -3.03 16 10 C 0.29 4.18 6.72 -83.61 -0.56 3.61 16 11 N -0.51 -8.93 6.30 32.55 0.21 -8.73 16 12 N -0.54 -9.89 6.16 30.48 0.19 -9.70 16 13 C 0.57 12.55 7.88 -12.42 -0.10 12.46 16 14 O -0.57 -14.03 16.16 5.29 0.09 -13.94 16 15 C -0.28 -6.30 5.89 -104.73 -0.62 -6.92 16 16 C -0.06 -1.32 9.47 -39.61 -0.38 -1.69 16 17 C -0.18 -4.14 8.64 -39.27 -0.34 -4.48 16 18 C 0.13 3.23 5.55 -106.80 -0.59 2.63 16 19 C -0.44 -10.55 9.02 -37.74 -0.34 -10.89 16 20 H 0.09 2.00 7.93 -52.49 -0.42 1.59 16 21 C 0.08 1.70 5.06 -17.31 -0.09 1.61 16 22 N -0.76 -17.70 11.21 55.56 0.62 -17.07 16 23 Si 0.91 16.64 29.61 -169.99 -5.03 11.61 16 24 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 25 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 26 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 27 C -0.24 -5.58 9.73 -39.27 -0.38 -5.96 16 28 C -0.02 -0.35 9.52 -39.61 -0.38 -0.73 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.08 7.62 -52.48 -0.40 0.68 16 33 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.43 6.25 -52.48 -0.33 1.11 16 36 H 0.45 8.78 4.52 -182.72 -0.83 7.96 16 37 H 0.42 6.49 4.63 -182.60 -0.85 5.65 16 38 H 0.09 1.54 6.37 -52.49 -0.33 1.20 16 39 H 0.12 2.76 6.35 -52.49 -0.33 2.43 16 40 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 41 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -29.88 363.12 -9.26 -39.15 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -5.55 Total: 18.04 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -4.59 Total: -11.26 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 1.02 Total: -35.50 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.57 Total: -27.51 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.88 -9.26 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780739398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.056 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds