Wall clock time and date at job start Sat Apr 11 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34759 * 117.00021 * 2 1 4 4 O 1.21529 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.47292 * 119.99983 * 180.02562 * 3 2 1 6 6 C 1.39792 * 120.21404 * 354.34763 * 5 3 2 7 7 C 1.37723 * 119.92317 * 180.02562 * 6 5 3 8 8 C 1.38629 * 120.36171 * 359.97438 * 7 6 5 9 9 C 1.37948 * 120.43280 * 0.02562 * 8 7 6 10 10 C 1.38959 * 120.07283 * 359.97438 * 9 8 7 11 11 N 1.38835 * 120.18419 * 179.97438 * 10 9 8 12 12 N 1.40097 * 119.99531 * 6.19397 * 11 10 9 13 13 C 1.34781 * 119.99593 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.47642 * 119.99632 * 180.02562 * 13 12 11 16 16 C 1.40014 * 119.89680 * 359.73050 * 15 13 12 17 17 C 1.36324 * 120.10388 * 179.71701 * 16 15 13 18 18 C 1.40891 * 119.89006 * 0.55518 * 17 16 15 19 19 C 1.41113 * 120.10070 * 179.69638 * 18 17 16 20 20 H 1.07994 * 119.99910 * 154.12840 * 19 18 17 21 21 C 1.40232 * 119.99906 * 334.12709 * 19 18 17 22 22 N 1.30640 * 120.00010 * 339.43331 * 21 19 18 23 23 Si 1.86803 * 119.99631 * 159.43085 * 21 19 18 24 24 H 1.48502 * 109.46627 * 94.75656 * 23 21 19 25 25 H 1.48500 * 109.46845 * 214.75444 * 23 21 19 26 26 H 1.48496 * 109.47319 * 334.75735 * 23 21 19 27 27 C 1.40883 * 119.79467 * 359.71833 * 18 17 16 28 28 C 1.36316 * 119.89201 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46787 * 299.99975 * 1 2 3 31 31 H 1.08991 * 109.47140 * 60.00296 * 1 2 3 32 32 H 1.08003 * 120.03934 * 0.02562 * 6 5 3 33 33 H 1.08003 * 119.82093 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.78631 * 180.02562 * 8 7 6 35 35 H 1.08008 * 119.96356 * 179.72432 * 9 8 7 36 36 H 0.96991 * 120.00199 * 186.19283 * 11 10 9 37 37 H 0.97003 * 120.00630 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.94944 * 359.97438 * 16 15 13 39 39 H 1.07995 * 120.05292 * 180.24805 * 17 16 15 40 40 H 0.97001 * 120.00300 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.05148 * 179.97438 * 27 18 17 42 42 H 1.08005 * 119.94665 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5347 1.2778 -0.0006 6 6 4.3002 0.1141 0.1179 7 6 5.6751 0.1931 0.1172 8 6 6.3063 1.4218 -0.0010 9 6 5.5654 2.5794 -0.1187 10 6 4.1771 2.5206 -0.1201 11 7 3.4292 3.6843 -0.2379 12 7 4.0688 4.9058 -0.4858 13 6 3.3427 6.0355 -0.6007 14 8 2.1328 5.9945 -0.4887 15 6 4.0168 7.3228 -0.8625 16 6 5.4108 7.3683 -0.9854 17 6 6.0370 8.5536 -1.2328 18 6 5.2801 9.7359 -1.3533 19 6 5.9243 10.9663 -1.6030 20 1 5.3907 11.7647 -2.0970 21 6 7.2574 11.1522 -1.2097 22 7 7.7784 10.3895 -0.2858 23 14 8.2883 12.4907 -2.0068 24 1 8.2369 13.7180 -1.1724 25 1 9.6950 12.0291 -2.1224 26 1 7.7525 12.7888 -3.3593 27 6 3.8782 9.6859 -1.2231 28 6 3.2604 8.4949 -0.9819 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 3.8139 -0.8459 0.2098 33 1 6.2649 -0.7070 0.2084 34 1 7.3851 1.4729 -0.0009 35 1 6.0650 3.5331 -0.2059 36 1 2.4640 3.6516 -0.1486 37 1 5.0342 4.9385 -0.5755 38 1 5.9905 6.4623 -0.8881 39 1 7.1119 8.5872 -1.3315 40 1 8.7006 10.5178 -0.0140 41 1 3.2940 10.5897 -1.3142 42 1 2.1857 8.4556 -0.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780739398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:42 Heat of formation + Delta-G solvation = -50.326006 kcal Electronic energy + Delta-G solvation = -27740.892034 eV Core-core repulsion = 23651.390207 eV Total energy + Delta-G solvation = -4089.501827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.95981 -41.01676 -39.90689 -38.97526 -37.71689 -36.86659 -35.73133 -33.51584 -32.51885 -31.80008 -31.37232 -29.60814 -28.54080 -27.48949 -25.12711 -24.26634 -23.03677 -22.74463 -22.55680 -21.34863 -19.76525 -19.38302 -18.84221 -18.41320 -18.00166 -17.50460 -17.43768 -17.08896 -16.17144 -16.11142 -15.81175 -15.75567 -15.46156 -15.13348 -14.80928 -14.76968 -14.53810 -14.42806 -14.11328 -13.97964 -13.79868 -13.31625 -13.22716 -12.88440 -12.87116 -12.76273 -12.59256 -12.38755 -12.27696 -11.90761 -11.83595 -11.54756 -11.42537 -11.14409 -11.01708 -10.49538 -10.11161 -9.64309 -9.51732 -8.85846 -8.40581 -6.51147 -0.27969 0.29611 0.55542 0.90650 1.10756 1.37682 1.42442 1.43506 1.55737 1.64949 2.00005 2.16540 2.69600 2.82858 3.20245 3.62658 3.63576 3.77593 4.01573 4.10008 4.22955 4.26759 4.28320 4.38440 4.42602 4.44021 4.56113 4.68642 4.87764 4.94272 4.98868 5.05491 5.09607 5.16510 5.22465 5.37691 5.51532 5.55701 5.59311 5.77284 5.82516 5.94211 5.99903 6.17134 6.33867 6.48338 6.51515 6.71923 6.73117 6.82888 7.32843 8.11225 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002314 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.229487 B =12098.127328 C =13473.352755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.513 3.487 4 O -0.555 6.555 5 C -0.238 4.238 6 C -0.003 4.003 7 C -0.187 4.187 8 C -0.014 4.014 9 C -0.232 4.232 10 C 0.256 3.744 11 N -0.531 5.531 12 N -0.525 5.525 13 C 0.570 3.430 14 O -0.603 6.603 15 C -0.289 4.289 16 C -0.051 4.051 17 C -0.193 4.193 18 C 0.105 3.895 19 C -0.467 4.467 20 H 0.088 0.912 21 C 0.041 3.959 22 N -0.790 5.790 23 Si 0.986 3.014 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.257 1.257 27 C -0.250 4.250 28 C -0.027 4.027 29 H 0.142 0.858 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.132 0.868 36 H 0.435 0.565 37 H 0.429 0.571 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.300 0.700 41 H 0.108 0.892 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -20.592 0.622 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.364 3.636 4 O -0.448 6.448 5 C -0.245 4.245 6 C -0.021 4.021 7 C -0.207 4.207 8 C -0.032 4.032 9 C -0.255 4.255 10 C 0.146 3.854 11 N -0.264 5.264 12 N -0.273 5.273 13 C 0.365 3.635 14 O -0.486 6.486 15 C -0.295 4.295 16 C -0.070 4.070 17 C -0.213 4.213 18 C 0.101 3.899 19 C -0.494 4.494 20 H 0.106 0.894 21 C -0.180 4.180 22 N -0.413 5.413 23 Si 0.805 3.195 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.181 1.181 27 C -0.270 4.270 28 C -0.046 4.046 29 H 0.160 0.840 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.149 0.851 36 H 0.290 0.710 37 H 0.274 0.726 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.574 -20.226 0.832 20.304 hybrid contribution -0.262 1.100 -0.097 1.135 sum 1.311 -19.126 0.735 19.185 Atomic orbital electron populations 1.23603 0.74449 1.06092 1.02351 1.86516 1.25017 1.30728 1.83940 1.21439 0.89405 0.81485 0.71320 1.90550 1.67359 1.36732 1.50208 1.18477 0.88448 0.93652 1.23962 1.21477 0.94393 0.96237 0.90000 1.21338 0.93730 0.99138 1.06521 1.21592 1.01622 0.90812 0.89198 1.20756 0.89987 1.01413 1.13326 1.18172 0.92324 0.83296 0.91621 1.44791 1.09683 0.96037 1.75846 1.44860 1.09510 0.98152 1.74798 1.18704 0.86239 0.83135 0.75429 1.90658 1.15725 1.86986 1.55233 1.18745 0.93987 0.90871 1.25850 1.20670 0.92113 0.97776 0.96448 1.20920 0.99592 0.91730 1.09025 1.18140 0.91752 0.94040 0.85944 1.20148 0.97285 0.99431 1.32488 0.89363 1.26931 0.98625 0.99518 0.92916 1.69754 1.16377 1.35408 1.19755 0.85126 0.77324 0.77384 0.79645 1.18621 1.18420 1.18080 1.20851 0.95055 0.96718 1.14328 1.20460 0.98105 0.91872 0.94173 0.83959 0.92223 0.92452 0.82177 0.81662 0.81788 0.85054 0.71048 0.72550 0.85776 0.86758 0.88887 0.87436 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.35 -7.56 9.83 -56.69 -0.56 -8.11 16 3 C 0.51 14.68 7.87 70.20 0.55 15.23 16 4 O -0.56 -20.12 13.44 19.74 0.27 -19.86 16 5 C -0.24 -6.08 5.89 -19.99 -0.12 -6.19 16 6 C 0.00 -0.04 9.61 22.52 0.22 0.17 16 7 C -0.19 -2.43 10.02 22.24 0.22 -2.21 16 8 C -0.01 -0.20 10.03 22.29 0.22 0.02 16 9 C -0.23 -5.16 9.45 22.37 0.21 -4.95 16 10 C 0.26 7.39 6.72 38.73 0.26 7.65 16 11 N -0.53 -19.36 6.30 -50.93 -0.32 -19.68 16 12 N -0.53 -19.49 6.16 -175.73 -1.08 -20.57 16 13 C 0.57 25.88 7.88 86.73 0.68 26.56 16 14 O -0.60 -31.44 16.16 -3.97 -0.06 -31.50 16 15 C -0.29 -13.35 5.89 -19.93 -0.12 -13.46 16 16 C -0.05 -2.19 9.47 22.25 0.21 -1.98 16 17 C -0.19 -9.24 8.64 22.47 0.19 -9.04 16 18 C 0.10 5.30 5.55 -21.28 -0.12 5.19 16 19 C -0.47 -22.86 9.02 23.46 0.21 -22.65 16 20 H 0.09 4.14 7.93 -2.91 -0.02 4.12 16 21 C 0.04 1.82 5.06 85.35 0.43 2.25 16 22 N -0.79 -36.39 11.21 21.87 0.25 -36.15 16 23 Si 0.99 33.44 29.61 68.60 2.03 35.48 16 24 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 25 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 26 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 27 C -0.25 -12.27 9.73 22.47 0.22 -12.05 16 28 C -0.03 -1.29 9.52 22.25 0.21 -1.08 16 29 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.16 1.91 7.62 -2.91 -0.02 1.88 16 33 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 34 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.13 2.73 6.25 -2.91 -0.02 2.71 16 36 H 0.44 18.10 4.52 -215.16 -0.97 17.13 16 37 H 0.43 13.19 4.63 -213.32 -0.99 12.21 16 38 H 0.12 4.24 6.37 -2.91 -0.02 4.22 16 39 H 0.11 5.44 6.35 -2.91 -0.02 5.43 16 40 H 0.30 12.16 8.29 -92.71 -0.77 11.39 16 41 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 42 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -68.89 363.12 4.35 -64.54 By element: Atomic # 1 Polarization: 51.62 SS G_CDS: -0.86 Total: 50.76 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 4.69 Total: -14.89 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -1.16 Total: -76.41 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -0.36 Total: -59.47 kcal Atomic # 14 Polarization: 33.44 SS G_CDS: 2.03 Total: 35.48 kcal Total: -68.89 4.35 -64.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780739398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.216 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds