Wall clock time and date at job start Sat Apr 11 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00156 * 2 1 4 4 C 1.53003 * 109.46881 * 179.97438 * 3 2 1 5 5 N 1.46489 * 109.47238 * 65.00091 * 4 3 2 6 6 C 1.36895 * 119.99990 * 315.78180 * 5 4 3 7 7 H 1.07998 * 120.00260 * 41.99153 * 6 5 4 8 8 C 1.39032 * 119.99826 * 221.98672 * 6 5 4 9 9 N 1.31378 * 119.99719 * 74.55297 * 8 6 5 10 10 Si 1.86803 * 120.00405 * 254.54927 * 8 6 5 11 11 H 1.48498 * 109.47101 * 90.00120 * 10 8 6 12 12 H 1.48502 * 109.47234 * 210.00440 * 10 8 6 13 13 H 1.48506 * 109.46832 * 330.00342 * 10 8 6 14 14 C 1.34780 * 120.00362 * 135.78343 * 5 4 3 15 15 O 1.21606 * 120.00326 * 160.29951 * 14 5 4 16 16 C 1.47629 * 119.99382 * 340.30396 * 14 5 4 17 17 C 1.39717 * 120.09704 * 328.55168 * 16 14 5 18 18 C 1.37881 * 120.00307 * 180.02562 * 17 16 14 19 19 C 1.38519 * 120.20332 * 359.97438 * 18 17 16 20 20 F 1.35103 * 119.90444 * 180.27830 * 19 18 17 21 21 C 1.39230 * 120.19211 * 0.02562 * 19 18 17 22 22 N 1.40103 * 120.00116 * 180.02562 * 21 19 18 23 23 C 1.34778 * 119.99853 * 201.87535 * 22 21 19 24 24 O 1.21522 * 119.99726 * 5.52842 * 23 22 21 25 25 O 1.34646 * 120.00110 * 185.52192 * 23 22 21 26 26 C 1.45208 * 116.99924 * 180.02562 * 25 23 22 27 27 C 1.38437 * 119.99092 * 359.97438 * 21 19 18 28 28 H 1.08993 * 109.47411 * 300.00470 * 1 2 3 29 29 H 1.09008 * 109.46829 * 59.99908 * 1 2 3 30 30 H 1.08999 * 109.47776 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46920 * 59.99447 * 3 2 1 32 32 H 1.08992 * 109.47012 * 299.99741 * 3 2 1 33 33 H 1.08998 * 109.46898 * 304.99742 * 4 3 2 34 34 H 1.09005 * 109.46770 * 185.00356 * 4 3 2 35 35 H 0.96999 * 119.99338 * 184.93484 * 9 8 6 36 36 H 1.08002 * 120.00126 * 0.02628 * 17 16 14 37 37 H 1.08000 * 119.90044 * 179.97438 * 18 17 16 38 38 H 0.96992 * 120.00275 * 21.87712 * 22 21 19 39 39 H 1.09001 * 109.46997 * 60.00122 * 26 25 23 40 40 H 1.08997 * 109.47116 * 180.02562 * 26 25 23 41 41 H 1.08989 * 109.47173 * 299.99889 * 26 25 23 42 42 H 1.08004 * 120.09857 * 179.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 3.3155 -0.5291 -1.7430 7 1 2.2364 -0.5643 -1.7174 8 6 4.0333 -1.5938 -2.2760 9 7 4.6706 -2.4210 -1.4788 10 14 4.0914 -1.8484 -4.1257 11 1 5.2483 -1.1087 -4.6911 12 1 4.2370 -3.2963 -4.4218 13 1 2.8350 -1.3425 -4.7347 14 6 5.0335 1.0689 -1.9176 15 8 5.6234 0.3836 -2.7308 16 6 5.4750 2.4540 -1.6606 17 6 4.5435 3.4308 -1.3000 18 6 4.9579 4.7239 -1.0609 19 6 6.2969 5.0592 -1.1765 20 9 6.6971 6.3268 -0.9353 21 6 7.2323 4.0923 -1.5353 22 7 8.5858 4.4357 -1.6504 23 6 9.4125 3.6763 -2.3963 24 8 8.9664 2.7535 -3.0491 25 8 10.7327 3.9402 -2.4183 26 6 11.5629 3.0816 -3.2441 27 6 6.8250 2.7915 -1.7771 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6887 1.8463 -0.8899 33 1 3.8507 0.5684 0.8427 34 1 3.9785 2.1765 0.0903 35 1 5.2293 -3.1205 -1.8521 36 1 3.4987 3.1730 -1.2085 37 1 4.2363 5.4778 -0.7827 38 1 8.9278 5.2198 -1.1934 39 1 11.2340 3.1466 -4.2812 40 1 12.6022 3.4021 -3.1714 41 1 11.4759 2.0514 -2.8992 42 1 7.5491 2.0403 -2.0560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822286561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:35 Heat of formation + Delta-G solvation = -117.366683 kcal Electronic energy + Delta-G solvation = -30366.461454 eV Core-core repulsion = 25843.283300 eV Total energy + Delta-G solvation = -4523.178154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -48.87302 -40.94205 -39.47272 -38.03835 -37.06287 -36.47154 -34.95456 -34.21983 -32.44505 -30.37994 -29.82464 -28.95215 -27.55348 -25.91174 -25.02421 -23.45180 -23.01271 -21.79088 -21.23193 -19.92297 -18.91992 -17.95538 -17.46899 -16.79815 -16.68807 -16.31782 -16.13026 -15.96675 -15.59880 -15.36393 -14.61318 -14.55886 -14.30154 -14.17322 -13.95186 -13.90739 -13.60342 -13.29239 -13.10403 -12.79272 -12.60320 -12.28621 -12.21647 -11.88822 -11.60979 -11.45500 -11.38517 -11.12910 -10.92329 -10.91783 -10.68879 -10.47877 -10.22303 -10.08415 -9.96647 -9.00347 -8.58065 -8.43326 -8.10049 -7.88553 -7.56720 -6.46119 -3.43811 1.04347 1.38764 1.90277 2.65510 3.50989 3.52961 3.65325 3.84680 3.94683 4.22112 4.24275 4.41881 4.53823 4.83252 4.86809 4.98248 4.99220 5.09108 5.23265 5.30643 5.39807 5.51571 5.58029 5.59030 5.72453 5.82239 5.82986 5.87857 6.00377 6.08055 6.10431 6.15486 6.23732 6.35907 6.47617 6.62629 6.77302 7.06266 7.17100 7.54445 7.80986 8.10941 8.39289 8.94318 9.28052 9.62888 10.22763 10.34485 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.004169 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.488357 B = 6714.956485 C = 8684.298932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.060 3.940 4 C 0.083 3.917 5 N -0.409 5.409 6 C -0.447 4.447 7 H 0.118 0.882 8 C 0.175 3.825 9 N -0.738 5.738 10 Si 0.850 3.150 11 H -0.258 1.258 12 H -0.306 1.306 13 H -0.274 1.274 14 C 0.464 3.536 15 O -0.553 6.553 16 C -0.075 4.075 17 C -0.099 4.099 18 C -0.134 4.134 19 C 0.059 3.941 20 F -0.143 7.143 21 C 0.123 3.877 22 N -0.644 5.644 23 C 0.643 3.357 24 O -0.533 6.533 25 O -0.370 6.370 26 C 0.055 3.945 27 C -0.074 4.074 28 H 0.028 0.972 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.269 0.731 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.418 0.582 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 14.451 4.226 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.265 6.265 3 C -0.018 4.018 4 C -0.040 4.040 5 N -0.127 5.127 6 C -0.565 4.565 7 H 0.135 0.865 8 C -0.052 4.052 9 N -0.362 5.362 10 Si 0.674 3.326 11 H -0.183 1.183 12 H -0.235 1.235 13 H -0.199 1.199 14 C 0.256 3.744 15 O -0.437 6.437 16 C -0.079 4.079 17 C -0.118 4.118 18 C -0.153 4.153 19 C 0.036 3.964 20 F -0.122 7.122 21 C 0.029 3.971 22 N -0.295 5.295 23 C 0.396 3.604 24 O -0.419 6.419 25 O -0.284 6.284 26 C -0.039 4.039 27 C -0.095 4.095 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.254 0.746 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.421 13.271 3.634 14.453 hybrid contribution 0.291 0.679 -0.501 0.893 sum 4.713 13.950 3.133 15.054 Atomic orbital electron populations 1.22666 0.83570 1.02080 0.98678 1.88386 1.17255 1.26252 1.94598 1.22674 0.94715 0.85679 0.98711 1.22160 0.92688 0.98662 0.90502 1.43317 1.27317 1.25821 1.16258 1.18899 0.92342 0.97259 1.47963 0.86550 1.25181 0.90753 0.90240 0.99016 1.70869 1.17908 1.07759 1.39652 0.87461 0.79948 0.75220 0.90001 1.18275 1.23494 1.19917 1.17926 0.85738 0.85560 0.85211 1.90613 1.54458 1.59440 1.39205 1.20564 0.92707 0.96815 0.97856 1.21383 1.00562 0.91448 0.98455 1.20806 0.92983 0.97753 1.03744 1.17301 0.92429 0.78017 1.08608 1.91439 1.91319 1.36831 1.92629 1.17359 0.80931 0.93518 1.05281 1.41698 1.06343 1.30433 1.50980 1.18094 0.81150 0.81671 0.79440 1.91100 1.75818 1.30752 1.44227 1.86216 1.17323 1.58179 1.66702 1.23276 0.92384 0.94079 0.94180 1.21619 0.96882 0.93957 0.97092 0.95387 0.94749 0.90236 0.94135 0.93508 0.92065 0.89685 0.91999 0.84008 0.84212 0.74583 0.91509 0.87773 0.91367 0.81606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.35 -6.80 7.63 -35.23 -0.27 -7.06 16 3 C 0.06 1.01 5.62 37.16 0.21 1.22 16 4 C 0.08 1.59 5.48 -4.05 -0.02 1.57 16 5 N -0.41 -10.00 2.86 -115.96 -0.33 -10.33 16 6 C -0.45 -12.19 8.02 -15.00 -0.12 -12.31 16 7 H 0.12 3.17 5.69 -52.49 -0.30 2.87 16 8 C 0.18 4.99 3.88 -17.45 -0.07 4.92 16 9 N -0.74 -21.27 13.95 55.50 0.77 -20.50 16 10 Si 0.85 22.71 27.74 -169.99 -4.71 17.99 16 11 H -0.26 -7.45 6.76 56.52 0.38 -7.06 16 12 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 13 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16 14 C 0.46 11.71 7.12 -12.43 -0.09 11.62 16 15 O -0.55 -16.29 13.05 5.27 0.07 -16.22 16 16 C -0.07 -1.51 5.32 -104.99 -0.56 -2.06 16 17 C -0.10 -1.56 7.40 -39.16 -0.29 -1.85 16 18 C -0.13 -1.77 10.00 -39.61 -0.40 -2.17 16 19 C 0.06 0.83 7.31 -39.11 -0.29 0.54 16 20 F -0.14 -1.83 16.76 2.25 0.04 -1.79 16 21 C 0.12 1.98 6.48 -83.63 -0.54 1.44 16 22 N -0.64 -8.89 5.34 -14.24 -0.08 -8.97 16 23 C 0.64 9.90 8.58 54.06 0.46 10.36 16 24 O -0.53 -10.36 13.14 -19.29 -0.25 -10.62 16 25 O -0.37 -4.57 10.62 -40.34 -0.43 -5.00 16 26 C 0.06 0.53 10.56 101.05 1.07 1.59 16 27 C -0.07 -1.46 8.30 -38.98 -0.32 -1.78 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.76 7.83 -51.93 -0.41 0.35 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.38 4.15 -51.93 -0.22 1.16 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.14 2.07 5.83 -52.49 -0.31 1.76 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.42 4.41 8.50 -40.82 -0.35 4.06 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.69 8.14 -51.94 -0.42 0.27 16 42 H 0.17 3.73 5.45 -52.48 -0.29 3.44 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -35.55 356.06 -4.49 -40.04 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.82 Total: 2.51 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 0.16 Total: 14.59 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.37 Total: -39.80 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.88 Total: -38.90 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.55 -4.49 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822286561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.327 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds