Wall clock time and date at job start Sat Apr 11 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00156 * 2 1 4 4 C 1.53003 * 109.46881 * 179.97438 * 3 2 1 5 5 N 1.46489 * 109.47238 * 65.00091 * 4 3 2 6 6 C 1.36895 * 119.99990 * 315.78180 * 5 4 3 7 7 H 1.07998 * 120.00260 * 41.99153 * 6 5 4 8 8 C 1.39032 * 119.99826 * 221.98672 * 6 5 4 9 9 N 1.31378 * 119.99719 * 74.55297 * 8 6 5 10 10 Si 1.86803 * 120.00405 * 254.54927 * 8 6 5 11 11 H 1.48498 * 109.47101 * 90.00120 * 10 8 6 12 12 H 1.48502 * 109.47234 * 210.00440 * 10 8 6 13 13 H 1.48506 * 109.46832 * 330.00342 * 10 8 6 14 14 C 1.34780 * 120.00362 * 135.78343 * 5 4 3 15 15 O 1.21606 * 120.00326 * 160.29951 * 14 5 4 16 16 C 1.47629 * 119.99382 * 340.30396 * 14 5 4 17 17 C 1.39717 * 120.09704 * 328.55168 * 16 14 5 18 18 C 1.37881 * 120.00307 * 180.02562 * 17 16 14 19 19 C 1.38519 * 120.20332 * 359.97438 * 18 17 16 20 20 F 1.35103 * 119.90444 * 180.27830 * 19 18 17 21 21 C 1.39230 * 120.19211 * 0.02562 * 19 18 17 22 22 N 1.40103 * 120.00116 * 180.02562 * 21 19 18 23 23 C 1.34778 * 119.99853 * 201.87535 * 22 21 19 24 24 O 1.21522 * 119.99726 * 5.52842 * 23 22 21 25 25 O 1.34646 * 120.00110 * 185.52192 * 23 22 21 26 26 C 1.45208 * 116.99924 * 180.02562 * 25 23 22 27 27 C 1.38437 * 119.99092 * 359.97438 * 21 19 18 28 28 H 1.08993 * 109.47411 * 300.00470 * 1 2 3 29 29 H 1.09008 * 109.46829 * 59.99908 * 1 2 3 30 30 H 1.08999 * 109.47776 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46920 * 59.99447 * 3 2 1 32 32 H 1.08992 * 109.47012 * 299.99741 * 3 2 1 33 33 H 1.08998 * 109.46898 * 304.99742 * 4 3 2 34 34 H 1.09005 * 109.46770 * 185.00356 * 4 3 2 35 35 H 0.96999 * 119.99338 * 184.93484 * 9 8 6 36 36 H 1.08002 * 120.00126 * 0.02628 * 17 16 14 37 37 H 1.08000 * 119.90044 * 179.97438 * 18 17 16 38 38 H 0.96992 * 120.00275 * 21.87712 * 22 21 19 39 39 H 1.09001 * 109.46997 * 60.00122 * 26 25 23 40 40 H 1.08997 * 109.47116 * 180.02562 * 26 25 23 41 41 H 1.08989 * 109.47173 * 299.99889 * 26 25 23 42 42 H 1.08004 * 120.09857 * 179.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 3.3155 -0.5291 -1.7430 7 1 2.2364 -0.5643 -1.7174 8 6 4.0333 -1.5938 -2.2760 9 7 4.6706 -2.4210 -1.4788 10 14 4.0914 -1.8484 -4.1257 11 1 5.2483 -1.1087 -4.6911 12 1 4.2370 -3.2963 -4.4218 13 1 2.8350 -1.3425 -4.7347 14 6 5.0335 1.0689 -1.9176 15 8 5.6234 0.3836 -2.7308 16 6 5.4750 2.4540 -1.6606 17 6 4.5435 3.4308 -1.3000 18 6 4.9579 4.7239 -1.0609 19 6 6.2969 5.0592 -1.1765 20 9 6.6971 6.3268 -0.9353 21 6 7.2323 4.0923 -1.5353 22 7 8.5858 4.4357 -1.6504 23 6 9.4125 3.6763 -2.3963 24 8 8.9664 2.7535 -3.0491 25 8 10.7327 3.9402 -2.4183 26 6 11.5629 3.0816 -3.2441 27 6 6.8250 2.7915 -1.7771 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6887 1.8463 -0.8899 33 1 3.8507 0.5684 0.8427 34 1 3.9785 2.1765 0.0903 35 1 5.2293 -3.1205 -1.8521 36 1 3.4987 3.1730 -1.2085 37 1 4.2363 5.4778 -0.7827 38 1 8.9278 5.2198 -1.1934 39 1 11.2340 3.1466 -4.2812 40 1 12.6022 3.4021 -3.1714 41 1 11.4759 2.0514 -2.8992 42 1 7.5491 2.0403 -2.0560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822286561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:33 Heat of formation + Delta-G solvation = -144.671365 kcal Electronic energy + Delta-G solvation = -30367.645474 eV Core-core repulsion = 25843.283300 eV Total energy + Delta-G solvation = -4524.362174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -50.00654 -42.17357 -41.01949 -39.45343 -38.49366 -37.74952 -36.30370 -36.05183 -34.43836 -31.77412 -31.15497 -30.47737 -28.48861 -27.34444 -26.64781 -24.77682 -24.46088 -23.23018 -22.48849 -21.61508 -20.19181 -19.44816 -18.70450 -18.35205 -17.84362 -17.75262 -17.52673 -17.27993 -16.78182 -16.70782 -16.50953 -15.96374 -15.93475 -15.65541 -15.19887 -15.08569 -14.90555 -14.80003 -14.64204 -14.26810 -13.97743 -13.94273 -13.63265 -13.15494 -13.09931 -12.93341 -12.84240 -12.64018 -12.50022 -12.38504 -12.10325 -11.99225 -11.93307 -11.78277 -11.40866 -10.56810 -10.31872 -10.05233 -9.87950 -9.58673 -9.26810 -8.53194 -5.53273 -0.28911 0.07930 0.80653 1.34310 1.41611 1.48610 1.63186 2.03284 2.23009 2.65411 2.87757 2.88950 3.00927 3.14665 3.22809 3.67361 3.85505 4.11639 4.15370 4.23084 4.27359 4.30465 4.31731 4.48897 4.55709 4.59702 4.64816 4.72102 4.73680 4.84445 4.88412 4.98798 5.00407 5.07323 5.14412 5.16921 5.40588 5.45010 5.75350 6.01148 6.43426 6.60471 6.94167 6.96434 7.29450 7.65598 8.21263 8.29262 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.004169 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.488357 B = 6714.956485 C = 8684.298932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.061 3.939 4 C 0.082 3.918 5 N -0.422 5.422 6 C -0.461 4.461 7 H 0.116 0.884 8 C 0.151 3.849 9 N -0.770 5.770 10 Si 0.875 3.125 11 H -0.299 1.299 12 H -0.298 1.298 13 H -0.264 1.264 14 C 0.459 3.541 15 O -0.608 6.608 16 C -0.102 4.102 17 C -0.084 4.084 18 C -0.107 4.107 19 C 0.087 3.913 20 F -0.125 7.125 21 C 0.122 3.878 22 N -0.631 5.631 23 C 0.642 3.358 24 O -0.580 6.580 25 O -0.359 6.359 26 C 0.047 3.953 27 C -0.093 4.093 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.119 0.881 35 H 0.269 0.731 36 H 0.162 0.838 37 H 0.193 0.807 38 H 0.436 0.564 39 H 0.062 0.938 40 H 0.149 0.851 41 H 0.056 0.944 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 19.065 5.947 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.040 4.040 5 N -0.140 5.140 6 C -0.579 4.579 7 H 0.133 0.867 8 C -0.073 4.073 9 N -0.396 5.396 10 Si 0.701 3.299 11 H -0.227 1.227 12 H -0.226 1.226 13 H -0.188 1.188 14 C 0.251 3.749 15 O -0.496 6.496 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.126 4.126 19 C 0.064 3.936 20 F -0.104 7.104 21 C 0.027 3.973 22 N -0.283 5.283 23 C 0.396 3.604 24 O -0.469 6.469 25 O -0.272 6.272 26 C -0.046 4.046 27 C -0.114 4.114 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.179 0.821 37 H 0.210 0.790 38 H 0.276 0.724 39 H 0.081 0.919 40 H 0.167 0.833 41 H 0.075 0.925 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.436 17.923 5.391 19.029 hybrid contribution 0.765 -0.424 -0.995 1.325 sum 4.201 17.500 4.397 18.526 Atomic orbital electron populations 1.22809 0.81304 1.02679 1.00376 1.88294 1.19881 1.28090 1.94970 1.22744 0.92420 0.85253 1.01135 1.22365 0.95104 0.99412 0.87118 1.43403 1.27196 1.25431 1.17987 1.18919 0.92448 0.97445 1.49105 0.86661 1.25531 0.91135 0.90602 0.99998 1.70933 1.19963 1.08635 1.40073 0.87021 0.78438 0.74990 0.89500 1.22682 1.22586 1.18816 1.18794 0.84929 0.87189 0.83992 1.90569 1.56140 1.61505 1.41355 1.20157 0.93968 0.94828 1.01701 1.21509 1.00439 0.91467 0.96961 1.21255 0.93241 0.97325 1.00763 1.17316 0.92312 0.77978 1.05961 1.91507 1.91236 1.35488 1.92141 1.17302 0.82267 0.92683 1.05015 1.41591 1.05570 1.30648 1.50522 1.18328 0.82086 0.81029 0.78934 1.91104 1.76784 1.32758 1.46247 1.86248 1.15754 1.58347 1.66895 1.23623 0.93937 0.93574 0.93505 1.21274 0.96242 0.95046 0.98867 0.92476 0.94039 0.90410 0.89639 0.92730 0.93984 0.86329 0.92018 0.82110 0.78972 0.72429 0.91937 0.83343 0.92485 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.92 16 2 O -0.39 -14.94 7.63 -148.98 -1.14 -16.07 16 3 C 0.06 1.89 5.62 71.98 0.40 2.30 16 4 C 0.08 3.04 5.48 86.38 0.47 3.51 16 5 N -0.42 -21.00 2.86 -639.05 -1.83 -22.82 16 6 C -0.46 -25.89 8.02 84.09 0.67 -25.22 16 7 H 0.12 6.42 5.69 -2.91 -0.02 6.41 16 8 C 0.15 8.98 3.88 84.95 0.33 9.31 16 9 N -0.77 -46.68 13.95 21.68 0.30 -46.38 16 10 Si 0.87 48.80 27.74 68.60 1.90 50.70 16 11 H -0.30 -18.57 6.76 99.48 0.67 -17.90 16 12 H -0.30 -15.84 7.11 99.48 0.71 -15.14 16 13 H -0.26 -14.01 7.11 99.48 0.71 -13.30 16 14 C 0.46 23.93 7.12 86.72 0.62 24.55 16 15 O -0.61 -38.18 13.05 -4.05 -0.05 -38.23 16 16 C -0.10 -4.09 5.32 -20.10 -0.11 -4.19 16 17 C -0.08 -2.35 7.40 22.54 0.17 -2.18 16 18 C -0.11 -2.19 10.00 22.25 0.22 -1.96 16 19 C 0.09 2.02 7.31 22.58 0.17 2.19 16 20 F -0.13 -2.45 16.76 44.97 0.75 -1.69 16 21 C 0.12 3.67 6.48 38.10 0.25 3.92 16 22 N -0.63 -16.34 5.34 -429.37 -2.29 -18.63 16 23 C 0.64 19.72 8.58 129.79 1.11 20.83 16 24 O -0.58 -23.67 13.14 19.77 0.26 -23.41 16 25 O -0.36 -8.51 10.62 -55.55 -0.59 -9.10 16 26 C 0.05 0.87 10.56 113.37 1.20 2.07 16 27 C -0.09 -3.69 8.30 22.66 0.19 -3.50 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.59 7.83 -2.39 -0.02 1.57 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.12 3.49 4.15 -2.38 -0.01 3.48 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 36 H 0.16 3.93 5.83 -2.91 -0.02 3.91 16 37 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.44 7.87 8.50 -92.71 -0.79 7.08 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.13 6.15 5.45 -2.91 -0.02 6.14 16 Total: -1.00 -86.00 356.06 4.53 -81.47 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.27 Total: 10.62 kcal Atomic # 6 Polarization: 26.60 SS G_CDS: 6.94 Total: 33.54 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -3.82 Total: -87.83 kcal Atomic # 8 Polarization: -85.29 SS G_CDS: -1.52 Total: -86.81 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.75 Total: -1.69 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.90 Total: 50.70 kcal Total: -86.00 4.53 -81.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822286561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.201 kcal (2) G-P(sol) polarization free energy of solvation -86.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds