Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47346 * 269.99931 * 3 2 1 5 5 H 1.48503 * 109.46792 * 29.99767 * 3 2 1 6 6 H 1.48499 * 109.47343 * 149.99661 * 3 2 1 7 7 C 1.38817 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00193 * 189.09906 * 7 2 1 9 9 N 1.36936 * 119.99683 * 9.10290 * 7 2 1 10 10 C 1.48151 * 127.84044 * 15.57188 * 9 7 2 11 11 C 1.54385 * 104.61950 * 140.41503 * 10 9 7 12 12 H 1.08998 * 117.61748 * 242.76484 * 11 10 9 13 13 C 1.54141 * 106.22803 * 23.25258 * 11 10 9 14 14 H 1.09000 * 121.78851 * 221.54787 * 13 11 10 15 15 C 1.48147 * 127.84129 * 195.57226 * 9 7 2 16 16 C 1.53004 * 59.75418 * 113.48907 * 13 11 10 17 17 H 1.09001 * 117.44422 * 252.37565 * 16 13 11 18 18 N 1.46498 * 117.44418 * 107.62684 * 16 13 11 19 19 C 1.34769 * 120.00138 * 135.99819 * 18 16 13 20 20 O 1.21593 * 119.99975 * 0.02562 * 19 18 16 21 21 C 1.47600 * 120.00361 * 179.97438 * 19 18 16 22 22 N 1.32571 * 120.89690 * 0.90159 * 21 19 18 23 23 N 1.28015 * 123.11272 * 180.02562 * 22 21 19 24 24 C 1.32284 * 124.11498 * 359.35147 * 23 22 21 25 25 O 1.35288 * 120.22936 * 180.02562 * 24 23 22 26 26 C 1.41108 * 119.54779 * 0.02562 * 24 23 22 27 27 C 1.39953 * 122.88243 * 180.02562 * 26 24 23 28 28 C 1.36385 * 119.36199 * 179.69907 * 27 26 24 29 29 C 1.39258 * 121.08045 * 0.30086 * 28 27 26 30 30 C 1.36490 * 121.02045 * 359.97438 * 29 28 27 31 31 C 1.39628 * 119.33697 * 359.97438 * 30 29 28 32 32 H 0.97001 * 119.99816 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.40673 * 21.62984 * 10 9 7 34 34 H 1.09008 * 110.50522 * 259.25376 * 10 9 7 35 35 H 1.09007 * 110.40311 * 338.37087 * 15 9 7 36 36 H 1.09002 * 110.40709 * 100.68072 * 15 9 7 37 37 H 0.97001 * 119.99748 * 315.99766 * 18 16 13 38 38 H 0.96699 * 113.99807 * 269.97936 * 25 24 23 39 39 H 1.08006 * 120.32304 * 359.97438 * 27 26 24 40 40 H 1.07998 * 119.46132 * 180.27728 * 28 27 26 41 41 H 1.07999 * 119.49238 * 180.02562 * 29 28 27 42 42 H 1.07995 * 120.33106 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1484 9 7 1.3386 -2.3807 -0.1866 10 6 -0.0341 -2.5711 -0.7103 11 6 0.0639 -3.8173 -1.6163 12 1 -0.1483 -3.6884 -2.6776 13 6 1.2890 -4.6126 -1.1239 14 1 1.9897 -5.0762 -1.8184 15 6 1.8196 -3.7546 0.0888 16 6 -0.1184 -5.1933 -0.9723 17 1 -0.5430 -5.2260 0.0311 18 7 -0.4878 -6.3061 -1.8505 19 6 -1.1414 -7.3724 -1.3484 20 8 -1.4249 -7.4106 -0.1666 21 6 -1.5142 -8.4935 -2.2333 22 7 -1.1993 -8.4781 -3.5210 23 7 -1.5015 -9.4262 -4.3262 24 6 -2.1452 -10.5255 -3.9696 25 8 -2.4242 -11.4795 -4.8875 26 6 -2.5387 -10.6965 -2.6254 27 6 -3.2217 -11.8308 -2.1720 28 6 -3.5623 -11.9242 -0.8547 29 6 -3.2471 -10.9075 0.0433 30 6 -2.5868 -9.7859 -0.3676 31 6 -2.2227 -9.6594 -1.7097 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3432 -1.7022 -1.2913 34 1 -0.7333 -2.7492 0.1069 35 1 2.9091 -3.7785 0.1107 36 1 1.4132 -4.1175 1.0329 37 1 -0.2620 -6.2755 -2.7934 38 1 -3.2762 -11.3626 -5.3296 39 1 -3.4726 -12.6266 -2.8577 40 1 -4.0854 -12.8009 -0.5022 41 1 -3.5288 -11.0084 1.0810 42 1 -2.3476 -9.0044 0.3383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962359479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = 76.767917 kcal Electronic energy + Delta-G solvation = -27887.012775 eV Core-core repulsion = 23835.314905 eV Total energy + Delta-G solvation = -4051.697870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.83181 -39.85710 -38.63947 -38.37626 -37.90513 -34.61420 -32.99055 -32.55068 -32.06744 -30.87716 -30.06121 -27.03530 -26.30665 -25.39342 -24.71229 -23.40042 -22.04411 -21.01219 -20.42084 -19.68833 -19.32757 -19.07285 -18.25450 -17.45415 -16.84152 -16.52130 -16.23357 -15.47713 -15.24872 -15.15697 -14.79444 -14.70427 -14.15988 -14.09702 -13.59259 -13.28338 -13.08389 -12.85484 -12.74849 -12.65922 -12.27690 -12.12534 -11.98240 -11.59828 -11.48519 -10.99306 -10.83780 -10.70599 -10.39257 -10.24691 -10.16651 -10.05687 -9.86055 -9.83256 -9.73815 -9.25150 -8.94688 -8.75083 -8.38664 -6.88466 -5.80582 -3.14972 -0.56967 0.12374 1.07878 2.07722 2.68793 2.78454 2.82744 3.38741 3.43938 3.44527 3.45925 3.55981 3.92276 4.04980 4.24561 4.29947 4.39395 4.46597 4.59657 4.72045 4.91216 5.11717 5.13510 5.16170 5.34680 5.38552 5.44284 5.56084 5.62602 5.72101 5.80811 5.85555 5.89806 6.07715 6.19052 6.28665 6.50359 6.67621 6.71358 6.75142 6.87498 7.32574 7.38963 7.52396 7.71060 7.98353 8.19432 8.25638 9.10029 9.72725 10.49275 11.33811 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026486 B = 0.002092 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.913766 B =13380.661470 C =13994.406613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.176 4.176 12 H 0.104 0.896 13 C -0.182 4.182 14 H 0.109 0.891 15 C 0.158 3.842 16 C 0.087 3.913 17 H 0.136 0.864 18 N -0.669 5.669 19 C 0.583 3.417 20 O -0.524 6.524 21 C 0.063 3.937 22 N -0.200 5.200 23 N -0.287 5.287 24 C 0.323 3.677 25 O -0.467 6.467 26 C -0.106 4.106 27 C -0.087 4.087 28 C -0.099 4.099 29 C -0.094 4.094 30 C -0.089 4.089 31 C -0.033 4.033 32 H 0.255 0.745 33 H 0.092 0.908 34 H 0.027 0.973 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.411 0.589 38 H 0.411 0.589 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -26.199 -5.465 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.198 4.198 12 H 0.122 0.878 13 C -0.204 4.204 14 H 0.127 0.873 15 C 0.031 3.969 16 C -0.018 4.018 17 H 0.154 0.846 18 N -0.316 5.316 19 C 0.366 3.634 20 O -0.400 6.400 21 C -0.097 4.097 22 N -0.038 5.038 23 N -0.130 5.130 24 C 0.127 3.873 25 O -0.274 6.274 26 C -0.114 4.114 27 C -0.107 4.107 28 C -0.118 4.118 29 C -0.113 4.113 30 C -0.108 4.108 31 C -0.040 4.040 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.247 0.753 38 H 0.271 0.729 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.704 -25.336 -5.771 27.404 hybrid contribution -0.584 -0.012 0.124 0.597 sum -9.288 -25.348 -5.647 27.580 Atomic orbital electron populations 1.69892 1.05058 1.25484 1.55671 1.24906 0.95660 0.98016 1.01681 0.86095 0.78693 0.83181 0.77638 1.21491 1.21653 1.20518 1.18997 0.90850 0.82227 1.43435 0.90463 1.45122 1.13318 1.00014 1.73102 1.21083 0.86995 0.92364 0.93661 1.24651 1.02165 0.92156 1.00780 0.87798 1.25115 0.90250 1.01883 1.03104 0.87274 1.21715 0.97265 0.85605 0.92348 1.22034 0.99155 0.84985 0.95653 0.84625 1.45277 1.55637 1.17526 1.13201 1.17155 0.78666 0.81189 0.86370 1.90676 1.54987 1.78963 1.15353 1.24248 0.97221 0.95055 0.93202 1.72873 1.12773 1.17179 1.00977 1.72388 1.13096 0.98488 1.29034 1.21070 0.91739 0.87485 0.87001 1.84627 1.43772 1.44048 1.54937 1.18986 1.01801 0.96872 0.93711 1.20882 0.96960 0.96131 0.96693 1.21192 0.98362 0.99153 0.93143 1.21346 0.96248 0.92976 1.00715 1.21906 0.94951 0.99244 0.94665 1.19490 0.97113 0.92203 0.95194 0.93504 0.88986 0.95477 0.93032 0.95041 0.75287 0.72887 0.83947 0.84681 0.84418 0.80760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.86 55.49 0.60 -26.02 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.28 10.35 -15.06 -0.16 -6.43 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.59 -15.05 3.38 -166.69 -0.56 -15.62 16 10 C 0.19 4.40 5.70 -2.41 -0.01 4.38 16 11 C -0.18 -3.31 6.97 -89.30 -0.62 -3.93 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 13 C -0.18 -3.22 7.33 -87.43 -0.64 -3.87 16 14 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 15 C 0.16 3.29 7.10 -0.54 0.00 3.29 16 16 C 0.09 1.45 5.93 -67.93 -0.40 1.05 16 17 H 0.14 2.46 7.40 -51.93 -0.38 2.07 16 18 N -0.67 -9.62 5.56 -54.82 -0.30 -9.93 16 19 C 0.58 8.50 7.80 -12.44 -0.10 8.41 16 20 O -0.52 -8.46 13.31 5.28 0.07 -8.39 16 21 C 0.06 0.83 7.05 -80.56 -0.57 0.27 16 22 N -0.20 -2.71 10.71 34.49 0.37 -2.34 16 23 N -0.29 -3.69 11.40 30.80 0.35 -3.34 16 24 C 0.32 3.27 7.91 -16.27 -0.13 3.15 16 25 O -0.47 -3.26 12.94 -17.56 -0.23 -3.49 16 26 C -0.11 -1.03 5.76 -106.76 -0.61 -1.64 16 27 C -0.09 -0.58 9.63 -39.61 -0.38 -0.96 16 28 C -0.10 -0.57 9.95 -39.87 -0.40 -0.97 16 29 C -0.09 -0.67 9.96 -39.83 -0.40 -1.06 16 30 C -0.09 -0.90 9.33 -39.69 -0.37 -1.28 16 31 C -0.03 -0.38 5.90 -104.80 -0.62 -1.00 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.09 2.44 6.51 -51.93 -0.34 2.10 16 34 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.41 5.35 8.22 -40.82 -0.34 5.01 16 38 H 0.41 0.64 9.06 45.56 0.41 1.06 16 39 H 0.14 0.58 7.75 -52.48 -0.41 0.17 16 40 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.18 2.01 5.28 -52.49 -0.28 1.73 16 LS Contribution 358.30 15.07 5.40 5.40 Total: -1.00 -33.62 358.30 -8.67 -42.29 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.83 Total: 5.45 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -5.51 Total: -0.84 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.46 Total: -57.25 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.16 Total: -11.88 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.62 -8.67 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962359479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.056 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds