Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47346 * 269.99931 * 3 2 1 5 5 H 1.48503 * 109.46792 * 29.99767 * 3 2 1 6 6 H 1.48499 * 109.47343 * 149.99661 * 3 2 1 7 7 C 1.38817 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00193 * 189.09906 * 7 2 1 9 9 N 1.36936 * 119.99683 * 9.10290 * 7 2 1 10 10 C 1.48151 * 127.84044 * 15.57188 * 9 7 2 11 11 C 1.54385 * 104.61950 * 140.41503 * 10 9 7 12 12 H 1.08998 * 117.61748 * 242.76484 * 11 10 9 13 13 C 1.54141 * 106.22803 * 23.25258 * 11 10 9 14 14 H 1.09000 * 121.78851 * 221.54787 * 13 11 10 15 15 C 1.48147 * 127.84129 * 195.57226 * 9 7 2 16 16 C 1.53004 * 59.75418 * 113.48907 * 13 11 10 17 17 H 1.09001 * 117.44422 * 252.37565 * 16 13 11 18 18 N 1.46498 * 117.44418 * 107.62684 * 16 13 11 19 19 C 1.34769 * 120.00138 * 135.99819 * 18 16 13 20 20 O 1.21593 * 119.99975 * 0.02562 * 19 18 16 21 21 C 1.47600 * 120.00361 * 179.97438 * 19 18 16 22 22 N 1.32571 * 120.89690 * 0.90159 * 21 19 18 23 23 N 1.28015 * 123.11272 * 180.02562 * 22 21 19 24 24 C 1.32284 * 124.11498 * 359.35147 * 23 22 21 25 25 O 1.35288 * 120.22936 * 180.02562 * 24 23 22 26 26 C 1.41108 * 119.54779 * 0.02562 * 24 23 22 27 27 C 1.39953 * 122.88243 * 180.02562 * 26 24 23 28 28 C 1.36385 * 119.36199 * 179.69907 * 27 26 24 29 29 C 1.39258 * 121.08045 * 0.30086 * 28 27 26 30 30 C 1.36490 * 121.02045 * 359.97438 * 29 28 27 31 31 C 1.39628 * 119.33697 * 359.97438 * 30 29 28 32 32 H 0.97001 * 119.99816 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.40673 * 21.62984 * 10 9 7 34 34 H 1.09008 * 110.50522 * 259.25376 * 10 9 7 35 35 H 1.09007 * 110.40311 * 338.37087 * 15 9 7 36 36 H 1.09002 * 110.40709 * 100.68072 * 15 9 7 37 37 H 0.97001 * 119.99748 * 315.99766 * 18 16 13 38 38 H 0.96699 * 113.99807 * 269.97936 * 25 24 23 39 39 H 1.08006 * 120.32304 * 359.97438 * 27 26 24 40 40 H 1.07998 * 119.46132 * 180.27728 * 28 27 26 41 41 H 1.07999 * 119.49238 * 180.02562 * 29 28 27 42 42 H 1.07995 * 120.33106 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1484 9 7 1.3386 -2.3807 -0.1866 10 6 -0.0341 -2.5711 -0.7103 11 6 0.0639 -3.8173 -1.6163 12 1 -0.1483 -3.6884 -2.6776 13 6 1.2890 -4.6126 -1.1239 14 1 1.9897 -5.0762 -1.8184 15 6 1.8196 -3.7546 0.0888 16 6 -0.1184 -5.1933 -0.9723 17 1 -0.5430 -5.2260 0.0311 18 7 -0.4878 -6.3061 -1.8505 19 6 -1.1414 -7.3724 -1.3484 20 8 -1.4249 -7.4106 -0.1666 21 6 -1.5142 -8.4935 -2.2333 22 7 -1.1993 -8.4781 -3.5210 23 7 -1.5015 -9.4262 -4.3262 24 6 -2.1452 -10.5255 -3.9696 25 8 -2.4242 -11.4795 -4.8875 26 6 -2.5387 -10.6965 -2.6254 27 6 -3.2217 -11.8308 -2.1720 28 6 -3.5623 -11.9242 -0.8547 29 6 -3.2471 -10.9075 0.0433 30 6 -2.5868 -9.7859 -0.3676 31 6 -2.2227 -9.6594 -1.7097 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3432 -1.7022 -1.2913 34 1 -0.7333 -2.7492 0.1069 35 1 2.9091 -3.7785 0.1107 36 1 1.4132 -4.1175 1.0329 37 1 -0.2620 -6.2755 -2.7934 38 1 -3.2762 -11.3626 -5.3296 39 1 -3.4726 -12.6266 -2.8577 40 1 -4.0854 -12.8009 -0.5022 41 1 -3.5288 -11.0084 1.0810 42 1 -2.3476 -9.0044 0.3383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962359479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = 50.371501 kcal Electronic energy + Delta-G solvation = -27888.157409 eV Core-core repulsion = 23835.314905 eV Total energy + Delta-G solvation = -4052.842505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61361 -41.09330 -39.83350 -39.21724 -38.69468 -36.18641 -34.48511 -33.51484 -32.72426 -32.25933 -31.25854 -28.80623 -27.78353 -26.71468 -25.41688 -24.33188 -23.30619 -22.22435 -22.01346 -20.92635 -20.38801 -19.96076 -19.04588 -18.82580 -18.25859 -17.61240 -17.18498 -16.74030 -16.39923 -16.22799 -15.78104 -15.66815 -15.47573 -15.07208 -14.89460 -14.80516 -14.61699 -13.80388 -13.75776 -13.50062 -13.34250 -13.24824 -13.19349 -12.95916 -12.90373 -12.71653 -12.60079 -12.13689 -11.99416 -11.90962 -11.70710 -11.47160 -11.12043 -10.87423 -10.71947 -10.67958 -10.47374 -9.87809 -9.57103 -8.92667 -7.91646 -5.28405 -1.33324 -0.57297 0.40651 1.20921 1.47325 1.49368 1.58081 1.59341 1.90750 2.11143 2.48327 2.68178 2.69212 2.84572 3.09704 3.29420 3.40508 3.55855 3.61485 3.66645 3.79289 3.91335 4.06102 4.06928 4.17122 4.20549 4.28522 4.45182 4.51048 4.58290 4.71292 4.86121 4.90678 4.98851 5.07233 5.23786 5.25099 5.29988 5.40340 5.43943 5.50292 5.64522 5.68659 6.16465 6.21975 6.36876 6.85420 7.00353 7.41110 7.67176 8.45483 9.22358 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026486 B = 0.002092 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.913766 B =13380.661470 C =13994.406613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.240 4.240 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.190 3.810 11 C -0.179 4.179 12 H 0.121 0.879 13 C -0.164 4.164 14 H 0.137 0.863 15 C 0.151 3.849 16 C 0.112 3.888 17 H 0.121 0.879 18 N -0.664 5.664 19 C 0.586 3.414 20 O -0.544 6.544 21 C 0.041 3.959 22 N -0.210 5.210 23 N -0.326 5.326 24 C 0.344 3.656 25 O -0.464 6.464 26 C -0.121 4.121 27 C -0.074 4.074 28 C -0.091 4.091 29 C -0.077 4.077 30 C -0.119 4.119 31 C -0.049 4.049 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.002 0.998 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.420 0.580 38 H 0.436 0.564 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.164 0.836 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.188 -29.731 -6.214 32.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.064 3.936 11 C -0.200 4.200 12 H 0.139 0.861 13 C -0.185 4.185 14 H 0.154 0.846 15 C 0.025 3.975 16 C 0.006 3.994 17 H 0.139 0.861 18 N -0.312 5.312 19 C 0.370 3.630 20 O -0.421 6.421 21 C -0.120 4.120 22 N -0.048 5.048 23 N -0.170 5.170 24 C 0.148 3.852 25 O -0.275 6.275 26 C -0.129 4.129 27 C -0.094 4.094 28 C -0.110 4.110 29 C -0.096 4.096 30 C -0.139 4.139 31 C -0.056 4.056 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.020 0.980 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.257 0.743 38 H 0.301 0.699 39 H 0.193 0.807 40 H 0.195 0.805 41 H 0.182 0.818 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.155 -28.922 -6.554 31.037 hybrid contribution -0.574 0.825 0.398 1.081 sum -9.729 -28.098 -6.156 30.365 Atomic orbital electron populations 1.70092 1.06551 1.25807 1.57082 1.25765 0.96518 1.01360 1.02020 0.85031 0.77735 0.78719 0.77546 1.21159 1.22119 1.19128 1.19392 0.91415 0.83399 1.42649 0.89899 1.45407 1.13768 1.01162 1.73696 1.20800 0.86182 0.93394 0.93186 1.24319 1.03938 0.91085 1.00683 0.86069 1.25022 0.90647 1.01147 1.01723 0.84563 1.21842 0.98000 0.84101 0.93532 1.21599 0.98153 0.84574 0.95087 0.86121 1.45110 1.55949 1.16911 1.13260 1.17402 0.77860 0.81359 0.86360 1.90673 1.55596 1.79487 1.16361 1.23960 0.99380 0.95455 0.93178 1.72748 1.12983 1.18019 1.01058 1.72292 1.15597 0.99837 1.29265 1.21142 0.89626 0.86631 0.87806 1.84579 1.45656 1.42682 1.54539 1.19169 1.02885 0.97646 0.93160 1.21333 0.94955 0.95340 0.97758 1.21663 0.97268 0.99685 0.92401 1.21735 0.93690 0.91731 1.02398 1.21786 0.97546 1.00525 0.94030 1.19616 0.97576 0.92312 0.96141 0.94066 0.92272 0.97999 0.91922 0.95324 0.74266 0.69887 0.80662 0.80541 0.81848 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.37 10.86 21.65 0.24 -57.14 16 2 C -0.06 -3.59 5.40 84.86 0.46 -3.14 16 3 Si 0.98 45.73 29.56 68.60 2.03 47.75 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.24 -13.52 10.35 84.03 0.87 -12.65 16 8 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 9 N -0.62 -32.20 3.38 -681.29 -2.30 -34.50 16 10 C 0.19 9.50 5.70 86.53 0.49 9.99 16 11 C -0.18 -6.82 6.97 -9.94 -0.07 -6.89 16 12 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 13 C -0.16 -5.72 7.33 -8.73 -0.06 -5.79 16 14 H 0.14 4.08 8.14 -2.39 -0.02 4.06 16 15 C 0.15 6.36 7.10 87.74 0.62 6.98 16 16 C 0.11 3.78 5.93 44.99 0.27 4.05 16 17 H 0.12 4.53 7.40 -2.39 -0.02 4.51 16 18 N -0.66 -19.24 5.56 -445.63 -2.48 -21.72 16 19 C 0.59 17.60 7.80 86.72 0.68 18.27 16 20 O -0.54 -18.34 13.31 -4.01 -0.05 -18.39 16 21 C 0.04 1.11 7.05 43.56 0.31 1.41 16 22 N -0.21 -5.75 10.71 -44.78 -0.48 -6.23 16 23 N -0.33 -8.23 11.40 -169.52 -1.93 -10.17 16 24 C 0.34 6.36 7.91 85.33 0.67 7.03 16 25 O -0.46 -5.06 12.94 -85.74 -1.11 -6.17 16 26 C -0.12 -2.09 5.76 -21.25 -0.12 -2.22 16 27 C -0.07 -0.68 9.63 22.25 0.21 -0.46 16 28 C -0.09 -0.63 9.95 22.08 0.22 -0.41 16 29 C -0.08 -0.87 9.96 22.11 0.22 -0.65 16 30 C -0.12 -2.39 9.33 22.20 0.21 -2.18 16 31 C -0.05 -1.12 5.90 -19.98 -0.12 -1.24 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.06 3.32 6.51 -2.39 -0.02 3.30 16 34 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 35 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.42 10.83 8.22 -92.71 -0.76 10.07 16 38 H 0.44 -0.14 9.06 -74.06 -0.67 -0.81 16 39 H 0.18 0.43 7.75 -2.91 -0.02 0.40 16 40 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 41 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.15 3.70 5.28 -2.91 -0.02 3.68 16 Total: -1.00 -77.10 358.30 -1.55 -78.66 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -0.32 Total: 15.79 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 4.86 Total: 12.11 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -6.96 Total: -129.76 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -1.16 Total: -24.56 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.10 -1.55 -78.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962359479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.031 kcal (2) G-P(sol) polarization free energy of solvation -77.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds