Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99444 * 2 1 4 4 H 1.48503 * 109.46829 * 265.38873 * 3 2 1 5 5 H 1.48495 * 109.47113 * 25.38504 * 3 2 1 6 6 H 1.48492 * 109.46775 * 145.38929 * 3 2 1 7 7 C 1.38803 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00353 * 343.43428 * 7 2 1 9 9 N 1.36941 * 119.99751 * 163.43495 * 7 2 1 10 10 C 1.48156 * 127.83476 * 160.87789 * 9 7 2 11 11 C 1.54388 * 104.61491 * 140.41441 * 10 9 7 12 12 H 1.08997 * 118.18139 * 244.20139 * 11 10 9 13 13 C 1.54285 * 104.95955 * 23.86679 * 11 10 9 14 14 H 1.09006 * 123.12678 * 221.63627 * 13 11 10 15 15 C 1.48144 * 127.84103 * 340.87871 * 9 7 2 16 16 C 1.53000 * 118.11938 * 87.19204 * 11 10 9 17 17 H 1.08999 * 117.44834 * 16.10657 * 16 11 10 18 18 N 1.46507 * 117.43998 * 160.80954 * 16 11 10 19 19 C 1.34774 * 119.99794 * 224.23653 * 18 16 11 20 20 O 1.21535 * 120.00114 * 359.97438 * 19 18 16 21 21 C 1.47993 * 120.00169 * 179.97438 * 19 18 16 22 22 C 1.40419 * 119.71129 * 0.02562 * 21 19 18 23 23 C 1.36074 * 120.77910 * 179.97438 * 22 21 19 24 24 C 1.40082 * 119.85921 * 0.03018 * 23 22 21 25 25 C 1.41590 * 121.88336 * 180.02562 * 24 23 22 26 26 O 1.35277 * 120.87730 * 359.95115 * 25 24 23 27 27 N 1.32329 * 118.24948 * 179.97438 * 25 24 23 28 28 C 1.32428 * 121.53046 * 359.97438 * 27 25 24 29 29 N 1.31120 * 122.93434 * 0.02562 * 28 27 25 30 30 C 1.34123 * 120.44038 * 359.97438 * 29 28 27 31 31 C 1.38543 * 119.71844 * 179.73089 * 21 19 18 32 32 H 0.96996 * 120.00386 * 359.97438 * 1 2 3 33 33 H 1.09002 * 110.40225 * 259.19669 * 10 9 7 34 34 H 1.08994 * 110.40894 * 21.62813 * 10 9 7 35 35 H 1.09003 * 110.40763 * 100.80359 * 15 9 7 36 36 H 1.08997 * 110.40711 * 338.36680 * 15 9 7 37 37 H 0.96999 * 120.00287 * 44.23259 * 18 16 11 38 38 H 1.07994 * 119.61543 * 0.02562 * 22 21 19 39 39 H 1.08001 * 120.06968 * 180.02562 * 23 22 21 40 40 H 0.96700 * 113.99968 * 89.99475 * 26 25 24 41 41 H 1.07997 * 118.53301 * 180.02562 * 28 27 25 42 42 H 1.07999 * 120.31456 * 359.97438 * 31 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5950 1.9903 -1.3956 5 1 1.4021 2.6789 0.6002 6 1 3.4955 1.4705 0.7952 7 6 2.0103 -1.2020 -0.0005 8 1 1.5041 -2.1181 0.2657 9 7 3.3371 -1.2264 -0.3387 10 6 4.3322 -2.2822 -0.0385 11 6 5.1892 -2.3849 -1.3186 12 1 5.1644 -3.3182 -1.8811 13 6 5.0381 -1.0140 -2.0102 14 1 4.9084 -0.9009 -3.0865 15 6 4.1030 -0.2030 -1.0875 16 6 6.3949 -1.4531 -1.4559 17 1 6.7528 -0.9582 -0.5531 18 7 7.4303 -1.8267 -2.4227 19 6 8.7320 -1.7329 -2.0861 20 8 9.0469 -1.3380 -0.9806 21 6 9.7779 -2.1109 -3.0624 22 6 9.4074 -2.5660 -4.3381 23 6 10.3510 -2.9187 -5.2529 24 6 11.7096 -2.8294 -4.9233 25 6 12.7269 -3.1846 -5.8418 26 8 12.4185 -3.6280 -7.0821 27 7 13.9873 -3.0718 -5.4550 28 6 14.3040 -2.6392 -4.2441 29 7 13.4062 -2.2962 -3.3521 30 6 12.0985 -2.3722 -3.6404 31 6 11.1143 -2.0069 -2.7121 32 1 -0.4850 0.8400 0.0004 33 1 4.9506 -1.9911 0.8106 34 1 3.8323 -3.2299 0.1613 35 1 4.6857 0.4126 -0.4022 36 1 3.4303 0.4178 -1.6791 37 1 7.1791 -2.1417 -3.3051 38 1 8.3612 -2.6361 -4.5967 39 1 10.0532 -3.2668 -6.2309 40 1 12.3466 -2.9266 -7.7439 41 1 15.3484 -2.5655 -3.9793 42 1 11.3947 -1.6515 -1.7316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962569842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = 73.058272 kcal Electronic energy + Delta-G solvation = -27556.442392 eV Core-core repulsion = 23504.583660 eV Total energy + Delta-G solvation = -4051.858732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.06136 -40.36153 -39.00254 -38.39324 -37.63846 -34.90088 -33.84407 -32.94809 -31.98201 -30.93795 -30.57631 -27.88132 -26.48356 -25.36540 -25.12433 -23.09673 -22.11214 -21.30529 -20.82083 -19.88188 -19.73468 -19.08135 -18.44213 -17.32781 -17.15903 -16.86399 -16.56510 -15.81369 -15.30509 -15.14419 -14.98138 -14.75289 -14.58876 -14.44352 -13.80499 -13.65507 -13.58258 -13.13200 -13.00337 -12.77034 -12.56798 -12.35789 -12.27573 -11.82273 -11.43548 -11.27860 -11.20014 -11.11644 -10.82830 -10.37373 -10.23891 -10.12789 -9.92947 -9.88586 -9.64595 -9.39997 -8.99561 -8.86936 -8.71273 -7.18163 -5.97946 -3.32806 -0.56656 -0.13053 1.08511 1.90786 2.58878 2.65086 2.85532 3.27963 3.41732 3.44841 3.46046 3.51983 3.65285 3.90774 3.98908 4.13870 4.18505 4.42529 4.48657 4.57729 4.74103 4.77676 5.00410 5.00979 5.05806 5.24521 5.27433 5.41603 5.45731 5.54936 5.63121 5.63789 5.66459 5.86628 5.88365 6.15791 6.33878 6.40797 6.44501 6.48485 6.57453 6.64782 6.70923 7.21252 7.46797 7.53209 7.89033 8.26640 8.72314 9.60490 10.13562 11.18091 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.001976 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.425705 B =14164.314285 C =14449.591025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.888 3.112 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.236 4.236 8 H 0.096 0.904 9 N -0.604 5.604 10 C 0.157 3.843 11 C -0.173 4.173 12 H 0.111 0.889 13 C -0.174 4.174 14 H 0.112 0.888 15 C 0.129 3.871 16 C 0.096 3.904 17 H 0.136 0.864 18 N -0.689 5.689 19 C 0.558 3.442 20 O -0.522 6.522 21 C -0.086 4.086 22 C -0.096 4.096 23 C -0.071 4.071 24 C -0.162 4.162 25 C 0.408 3.592 26 O -0.469 6.469 27 N -0.543 5.543 28 C 0.323 3.677 29 N -0.502 5.502 30 C 0.164 3.836 31 C -0.034 4.034 32 H 0.264 0.736 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.414 0.586 41 H 0.205 0.795 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.337 -5.863 -15.532 31.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.719 3.281 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.363 4.363 8 H 0.113 0.887 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.195 4.195 12 H 0.129 0.871 13 C -0.195 4.195 14 H 0.129 0.871 15 C 0.003 3.997 16 C -0.009 4.009 17 H 0.154 0.846 18 N -0.338 5.338 19 C 0.344 3.656 20 O -0.399 6.399 21 C -0.093 4.093 22 C -0.115 4.115 23 C -0.091 4.091 24 C -0.168 4.168 25 C 0.206 3.794 26 O -0.277 6.277 27 N -0.268 5.268 28 C 0.034 3.966 29 N -0.217 5.217 30 C 0.037 3.963 31 C -0.054 4.054 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.275 0.725 41 H 0.221 0.779 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 27.134 -5.908 -14.059 31.126 hybrid contribution -0.561 1.008 -1.255 1.705 sum 26.573 -4.900 -15.314 31.059 Atomic orbital electron populations 1.69767 1.05419 1.26636 1.53862 1.25020 0.95303 0.97529 1.00108 0.86914 0.79382 0.84379 0.77475 1.21397 1.22968 1.19533 1.18659 0.80922 0.95112 1.41619 0.88659 1.45543 1.06157 1.19251 1.61867 1.21136 0.89963 0.93769 0.92027 1.24416 0.98935 0.94408 1.01702 0.87141 1.24301 0.95794 0.99535 0.99897 0.87054 1.21693 0.92763 0.92356 0.92893 1.21906 0.82323 1.02140 0.94559 0.84634 1.45254 1.04887 1.66357 1.17284 1.18089 0.82314 0.78287 0.86917 1.90822 1.81819 1.45462 1.21751 1.20107 0.93814 1.00714 0.94618 1.21089 1.00596 0.97623 0.92159 1.20784 0.90278 0.97572 1.00502 1.19734 0.96090 1.04421 0.96587 1.19659 0.87103 0.86047 0.86557 1.84631 1.90341 1.36601 1.16115 1.67925 1.21033 1.16818 1.21060 1.24806 1.00239 0.88838 0.82756 1.68789 1.00693 1.17692 1.34487 1.18777 0.91199 0.95268 0.91053 1.21208 0.89559 0.94889 0.99741 0.92596 0.94709 0.91832 0.94454 0.90883 0.76405 0.84335 0.83557 0.72479 0.77874 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.84 13.97 55.49 0.78 -27.06 16 2 C 0.02 0.54 5.49 -17.43 -0.10 0.44 16 3 Si 0.89 22.29 24.49 -169.99 -4.16 18.13 16 4 H -0.29 -6.87 6.35 56.52 0.36 -6.51 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.66 6.33 56.52 0.36 -6.30 16 7 C -0.24 -6.58 10.78 -15.06 -0.16 -6.74 16 8 H 0.10 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.60 -14.24 3.19 -168.86 -0.54 -14.78 16 10 C 0.16 3.00 7.04 -2.40 -0.02 2.99 16 11 C -0.17 -2.67 7.06 -89.22 -0.63 -3.30 16 12 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 13 C -0.17 -2.79 7.06 -89.22 -0.63 -3.42 16 14 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 15 C 0.13 2.70 4.49 -2.41 -0.01 2.69 16 16 C 0.10 1.38 5.98 -67.93 -0.41 0.97 16 17 H 0.14 2.21 7.40 -51.93 -0.38 1.83 16 18 N -0.69 -7.58 5.51 -54.70 -0.30 -7.88 16 19 C 0.56 6.80 7.77 -12.26 -0.10 6.71 16 20 O -0.52 -8.39 15.87 5.33 0.08 -8.31 16 21 C -0.09 -0.81 5.87 -104.97 -0.62 -1.43 16 22 C -0.10 -0.63 9.45 -39.54 -0.37 -1.00 16 23 C -0.07 -0.42 9.58 -39.67 -0.38 -0.80 16 24 C -0.16 -1.30 5.76 -106.63 -0.61 -1.91 16 25 C 0.41 3.08 7.89 -16.06 -0.13 2.95 16 26 O -0.47 -2.34 12.91 -17.52 -0.23 -2.57 16 27 N -0.54 -4.62 10.42 -14.23 -0.15 -4.76 16 28 C 0.32 2.53 12.22 -92.18 -1.13 1.40 16 29 N -0.50 -4.91 10.44 -12.65 -0.13 -5.04 16 30 C 0.16 1.60 6.61 -84.86 -0.56 1.04 16 31 C -0.03 -0.35 9.58 -38.76 -0.37 -0.72 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.04 0.80 6.80 -51.93 -0.35 0.45 16 36 H 0.07 1.65 5.06 -51.93 -0.26 1.38 16 37 H 0.40 3.10 6.81 -40.82 -0.28 2.82 16 38 H 0.14 0.55 6.34 -52.49 -0.33 0.21 16 39 H 0.15 0.48 7.70 -52.49 -0.40 0.07 16 40 H 0.41 -0.11 9.06 45.56 0.41 0.30 16 41 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.16 1.72 7.61 -52.49 -0.40 1.32 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -36.22 352.98 -9.31 -45.52 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.76 Total: 1.58 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -6.22 Total: -0.13 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.35 Total: -59.53 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.14 Total: -10.88 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.16 Total: 18.13 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.22 -9.31 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962569842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.580 kcal (2) G-P(sol) polarization free energy of solvation -36.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds