Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00253 * 2 1 4 4 H 1.48499 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46907 * 300.00296 * 3 2 1 6 6 H 1.48502 * 109.46836 * 60.00116 * 3 2 1 7 7 C 1.38815 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00175 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.47873 * 126.93941 * 359.97438 * 9 7 2 11 11 C 1.56020 * 105.09912 * 182.00398 * 10 9 7 12 12 H 1.09004 * 116.24685 * 158.83796 * 11 10 9 13 13 C 1.57080 * 99.60989 * 32.80475 * 11 10 9 14 14 C 1.49282 * 126.94917 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.78403 * 16.30389 * 14 9 7 16 16 C 1.56020 * 104.09545 * 246.69949 * 14 9 7 17 17 N 1.49072 * 105.20168 * 288.09299 * 16 14 9 18 18 C 1.34775 * 127.54370 * 182.02767 * 17 16 14 19 19 O 1.21530 * 120.00019 * 175.48136 * 18 17 16 20 20 C 1.47992 * 119.99902 * 355.48521 * 18 17 16 21 21 C 1.40424 * 119.71804 * 185.29745 * 20 18 17 22 22 C 1.36067 * 120.77982 * 179.97438 * 21 20 18 23 23 C 1.40084 * 119.86399 * 0.02562 * 22 21 20 24 24 C 1.41579 * 121.88368 * 179.97438 * 23 22 21 25 25 O 1.35276 * 120.87840 * 0.02562 * 24 23 22 26 26 N 1.32323 * 118.24778 * 180.02562 * 24 23 22 27 27 C 1.32429 * 121.53579 * 359.97438 * 26 24 23 28 28 N 1.31120 * 122.92810 * 0.02562 * 27 26 24 29 29 C 1.34123 * 120.44407 * 0.02562 * 28 27 26 30 30 C 1.38550 * 119.71557 * 5.02099 * 20 18 17 31 31 H 0.96993 * 119.99823 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.31565 * 63.10277 * 10 9 7 33 33 H 1.08990 * 110.31841 * 300.91043 * 10 9 7 34 34 H 1.09008 * 112.36260 * 64.27446 * 13 11 10 35 35 H 1.08999 * 112.36982 * 191.61937 * 13 11 10 36 36 H 1.08996 * 110.31714 * 47.66706 * 16 14 9 37 37 H 1.08993 * 110.31926 * 169.85799 * 16 14 9 38 38 H 1.07998 * 119.60237 * 359.97438 * 21 20 18 39 39 H 1.08001 * 120.06196 * 180.02562 * 22 21 20 40 40 H 0.96701 * 114.00285 * 89.99557 * 25 24 23 41 41 H 1.07993 * 118.53864 * 180.02562 * 27 26 24 42 42 H 1.07996 * 120.31918 * 0.02562 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1423 -2.5668 -0.0018 11 6 -0.3638 -4.1104 0.0495 12 1 -1.3362 -4.4461 0.4099 13 6 0.8840 -4.5259 0.9084 14 6 1.9101 -3.7617 -0.0028 15 1 2.9618 -3.8483 0.2703 16 6 1.5082 -4.3445 -1.3932 17 7 0.0426 -4.6008 -1.3006 18 6 -0.7578 -5.1404 -2.2412 19 8 -1.9256 -5.3640 -1.9899 20 6 -0.2145 -5.4608 -3.5800 21 6 -1.0764 -5.9180 -4.5899 22 6 -0.6002 -6.2184 -5.8286 23 6 0.7653 -6.0722 -6.1053 24 6 1.3066 -6.3727 -7.3785 25 8 0.5154 -6.8155 -8.3824 26 7 2.6070 -6.2090 -7.5606 27 6 3.3936 -5.7758 -6.5872 28 7 2.9492 -5.4820 -5.3891 29 6 1.6469 -5.6130 -5.0963 30 6 1.1393 -5.3016 -3.8279 31 1 -0.4849 0.8400 0.0004 32 1 -0.5738 -2.1527 -0.9130 33 1 -0.5814 -2.0921 0.8756 34 1 0.8450 -4.1206 1.9196 35 1 1.0481 -5.6035 0.9072 36 1 1.7268 -3.6254 -2.1825 37 1 2.0340 -5.2812 -1.5773 38 1 -2.1298 -6.0325 -4.3808 39 1 -1.2736 -6.5687 -6.5968 40 1 0.1444 -6.1108 -8.9309 41 1 4.4481 -5.6594 -6.7893 42 1 1.7980 -4.9458 -3.0494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032785211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = 59.794288 kcal Electronic energy + Delta-G solvation = -29324.115169 eV Core-core repulsion = 25271.681267 eV Total energy + Delta-G solvation = -4052.433902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.66664 -41.71767 -39.81359 -38.87607 -38.20939 -35.60694 -34.39412 -33.76600 -32.43768 -31.44400 -30.46087 -30.35524 -27.21783 -26.73662 -25.70375 -25.18186 -23.46943 -22.78885 -21.46309 -20.81041 -20.21344 -19.58120 -19.04036 -18.63969 -17.94150 -17.47927 -17.20419 -16.71140 -16.45921 -16.31086 -15.79410 -15.56899 -15.15462 -15.14195 -14.93811 -14.80855 -14.24502 -13.90448 -13.67471 -13.52845 -13.40366 -13.24964 -13.13374 -12.92613 -12.77528 -12.74224 -12.23511 -12.17028 -11.98471 -11.97097 -11.83017 -11.63191 -11.54090 -11.24101 -10.75181 -10.52472 -10.43609 -9.67518 -9.54066 -8.91691 -7.85302 -5.20649 -1.14737 -0.67211 0.50115 1.29079 1.47224 1.47771 1.57730 1.74386 2.08983 2.21831 2.48019 2.82651 2.88118 3.09837 3.25196 3.33759 3.37697 3.49188 3.70160 3.75894 3.81221 3.93302 3.99592 4.10090 4.17348 4.28505 4.40395 4.51251 4.55850 4.57984 4.76445 4.83630 4.90281 4.99779 5.07688 5.10528 5.14290 5.20820 5.36075 5.44186 5.50323 5.65460 5.78904 6.09000 6.42261 6.45679 6.92181 6.94148 7.02860 7.70285 8.39901 9.26163 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.003409 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.166132 B = 8211.075150 C = 9248.665688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.258 1.258 5 H -0.301 1.301 6 H -0.296 1.296 7 C -0.228 4.228 8 H 0.097 0.903 9 N -0.615 5.615 10 C 0.187 3.813 11 C 0.101 3.899 12 H 0.119 0.881 13 C -0.129 4.129 14 C 0.136 3.864 15 H 0.141 0.859 16 C 0.080 3.920 17 N -0.601 5.601 18 C 0.563 3.437 19 O -0.576 6.576 20 C -0.088 4.088 21 C -0.086 4.086 22 C -0.057 4.057 23 C -0.174 4.174 24 C 0.418 3.582 25 O -0.467 6.467 26 N -0.558 5.558 27 C 0.322 3.678 28 N -0.525 5.525 29 C 0.148 3.852 30 C -0.103 4.103 31 H 0.243 0.757 32 H -0.002 1.002 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.180 0.820 40 H 0.436 0.564 41 H 0.235 0.765 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -15.333 -12.717 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.229 1.229 6 H -0.224 1.224 7 C -0.357 4.357 8 H 0.114 0.886 9 N -0.340 5.340 10 C 0.061 3.939 11 C -0.002 4.002 12 H 0.137 0.863 13 C -0.168 4.168 14 C 0.029 3.971 15 H 0.158 0.842 16 C -0.043 4.043 17 N -0.333 5.333 18 C 0.353 3.647 19 O -0.458 6.458 20 C -0.094 4.094 21 C -0.105 4.105 22 C -0.077 4.077 23 C -0.180 4.180 24 C 0.216 3.784 25 O -0.279 6.279 26 N -0.284 5.284 27 C 0.034 3.966 28 N -0.240 5.240 29 C 0.023 3.977 30 C -0.121 4.121 31 H 0.053 0.947 32 H 0.016 0.984 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.167 0.833 39 H 0.197 0.803 40 H 0.302 0.698 41 H 0.251 0.749 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.526 -15.612 -12.512 20.513 hybrid contribution -1.170 1.840 -0.074 2.181 sum 3.357 -13.772 -12.586 18.956 Atomic orbital electron populations 1.70146 1.06535 1.25054 1.58830 1.25617 0.96368 1.01040 1.03138 0.85063 0.78646 0.79799 0.76173 1.18225 1.22905 1.22384 1.19577 0.91309 0.83016 1.41768 0.88571 1.45491 1.01458 1.00996 1.86017 1.21537 0.84978 0.89914 0.97504 1.24245 0.99872 0.94160 0.81876 0.86293 1.24093 0.93563 1.00911 0.98275 1.23644 0.98633 0.83335 0.91484 0.84193 1.23868 0.79070 1.00347 1.01051 1.49470 1.10283 1.58044 1.15478 1.18212 0.84903 0.77504 0.84072 1.90714 1.17575 1.56321 1.81157 1.20097 0.94262 1.01080 0.93991 1.21128 1.00969 0.96484 0.91887 1.21075 0.93036 0.96355 0.97226 1.19939 0.97173 1.04853 0.96046 1.19696 0.87195 0.84831 0.86652 1.84573 1.62890 1.37143 1.43312 1.68025 1.05660 1.17178 1.37487 1.25432 1.01351 0.87804 0.82060 1.68790 1.13796 1.18978 1.22480 1.18924 0.89413 0.95564 0.93826 1.22671 0.95328 0.97056 0.97063 0.94726 0.98400 0.95798 0.89614 0.87844 0.91652 0.87684 0.83318 0.80256 0.69813 0.74912 0.80501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.32 10.56 21.65 0.23 -57.09 16 2 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 3 Si 0.97 44.73 29.55 68.60 2.03 46.75 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.23 -11.81 10.38 84.03 0.87 -10.94 16 8 H 0.10 4.61 7.83 -2.91 -0.02 4.59 16 9 N -0.62 -28.65 3.02 -648.55 -1.96 -30.61 16 10 C 0.19 9.04 4.78 87.16 0.42 9.46 16 11 C 0.10 3.78 5.20 46.93 0.24 4.03 16 12 H 0.12 4.35 8.04 -2.38 -0.02 4.33 16 13 C -0.13 -3.87 6.80 33.46 0.23 -3.64 16 14 C 0.14 4.50 5.53 46.93 0.26 4.76 16 15 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 16 C 0.08 2.49 4.27 86.93 0.37 2.86 16 17 N -0.60 -21.28 3.01 -772.00 -2.32 -23.60 16 18 C 0.56 20.39 7.87 86.83 0.68 21.07 16 19 O -0.58 -23.83 16.66 -3.81 -0.06 -23.90 16 20 C -0.09 -2.64 5.87 -20.08 -0.12 -2.76 16 21 C -0.09 -2.11 9.50 22.30 0.21 -1.89 16 22 C -0.06 -1.08 9.58 22.21 0.21 -0.87 16 23 C -0.17 -3.82 5.76 -21.17 -0.12 -3.94 16 24 C 0.42 7.92 7.89 85.44 0.67 8.59 16 25 O -0.47 -5.77 12.91 -85.60 -1.11 -6.87 16 26 N -0.56 -11.44 10.42 -311.99 -3.25 -14.69 16 27 C 0.32 6.38 12.22 180.89 2.21 8.59 16 28 N -0.52 -13.10 10.44 -193.94 -2.03 -15.13 16 29 C 0.15 3.90 6.61 40.09 0.26 4.16 16 30 C -0.10 -2.89 8.83 22.80 0.20 -2.69 16 31 H 0.24 14.41 8.31 -92.71 -0.77 13.63 16 32 H 0.00 -0.13 7.68 -2.39 -0.02 -0.15 16 33 H 0.02 1.30 7.46 -2.39 -0.02 1.29 16 34 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 2.33 6.96 -2.39 -0.02 2.31 16 37 H 0.11 2.51 6.86 -2.39 -0.02 2.50 16 38 H 0.15 3.50 7.62 -2.91 -0.02 3.48 16 39 H 0.18 2.01 7.70 -2.91 -0.02 1.98 16 40 H 0.44 0.73 9.06 -74.06 -0.67 0.06 16 41 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.18 4.95 2.75 -4.33 -0.01 4.93 16 Total: -1.00 -76.89 347.23 -0.96 -77.86 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.43 Total: 13.82 kcal Atomic # 6 Polarization: 26.38 SS G_CDS: 7.08 Total: 33.46 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -9.33 Total: -141.12 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.17 Total: -30.77 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.89 -0.96 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032785211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.653 kcal (2) G-P(sol) polarization free energy of solvation -76.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds