Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00301 * 2 1 4 4 H 1.48502 * 109.47585 * 240.00520 * 3 2 1 5 5 H 1.48505 * 109.46723 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47526 * 120.00089 * 3 2 1 7 7 C 1.38799 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00706 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99769 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99994 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00305 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99984 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99895 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46997 * 180.02562 * 14 13 11 16 16 O 1.42897 * 113.28022 * 313.06571 * 15 14 13 17 17 C 1.53501 * 114.20418 * 180.02562 * 15 14 13 18 18 N 1.47070 * 87.98383 * 220.34240 * 17 15 14 19 19 C 1.34775 * 136.06126 * 207.08735 * 18 17 15 20 20 O 1.21286 * 119.99711 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00215 * 179.97438 * 19 18 17 22 22 H 1.09002 * 115.54932 * 34.41541 * 21 19 18 23 23 C 1.53005 * 117.49759 * 248.74266 * 21 19 18 24 24 C 1.52995 * 117.49757 * 180.08595 * 21 19 18 25 25 C 1.52999 * 138.58973 * 336.62058 * 24 21 19 26 26 C 1.52992 * 138.58961 * 238.40159 * 24 21 19 27 27 C 1.47070 * 87.88337 * 27.34099 * 18 17 15 28 28 H 0.97004 * 120.00149 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46689 * 60.00488 * 10 9 7 30 30 H 1.08990 * 109.47663 * 300.00352 * 10 9 7 31 31 H 0.97001 * 119.99998 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47421 * 60.00697 * 14 13 11 33 33 H 1.08996 * 109.47634 * 300.00154 * 14 13 11 34 34 H 0.96702 * 113.99762 * 46.93671 * 16 15 14 35 35 H 1.09004 * 113.46591 * 105.56745 * 17 15 14 36 36 H 1.08993 * 113.52535 * 335.12837 * 17 15 14 37 37 H 1.09000 * 117.49916 * 359.97438 * 23 21 19 38 38 H 1.08999 * 117.49608 * 144.97308 * 23 21 19 39 39 H 1.08994 * 117.49863 * 336.59580 * 25 24 21 40 40 H 1.08996 * 117.49928 * 121.61806 * 25 24 21 41 41 H 1.08994 * 117.50298 * 238.38849 * 26 24 21 42 42 H 1.09006 * 117.49909 * 23.41082 * 26 24 21 43 43 H 1.09001 * 113.46246 * 87.43621 * 27 18 17 44 44 H 1.09000 * 113.46965 * 217.87450 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7911 -5.5023 -0.0009 13 7 2.8441 -6.3431 -0.0033 14 6 2.3304 -7.7150 -0.0034 15 6 3.5025 -8.6985 -0.0046 16 8 4.5105 -8.3746 -0.9642 17 6 3.0846 -10.1756 -0.0055 18 7 4.1770 -10.4314 0.9453 19 6 4.9580 -11.4818 1.2664 20 8 4.8169 -12.5405 0.6917 21 6 6.0073 -11.3406 2.3388 22 1 5.7477 -10.6807 3.1666 23 6 7.4733 -11.3840 1.9028 24 6 6.8630 -12.5686 2.6559 25 6 6.7787 -14.0907 2.5254 26 6 7.1928 -13.4586 3.8558 27 6 4.0379 -9.0384 1.3960 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7317 0.8875 30 1 3.1238 -3.7310 -0.8924 31 1 3.8009 -6.1835 -0.0043 32 1 1.7208 -7.8747 -0.8928 33 1 1.7227 -7.8756 0.8871 34 1 4.7715 -7.4434 -0.9614 35 1 3.2242 -10.6656 -0.9692 36 1 2.0939 -10.3477 0.4151 37 1 7.6788 -11.5150 0.8404 38 1 8.1780 -10.7522 2.4435 39 1 5.7858 -14.5366 2.4675 40 1 7.5530 -14.5896 1.9427 41 1 8.2394 -13.5416 4.1484 42 1 6.4722 -13.4887 4.6732 43 1 3.2984 -8.9098 2.1863 44 1 4.9896 -8.5596 1.6265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041570442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -10.071570 kcal Electronic energy + Delta-G solvation = -25954.316004 eV Core-core repulsion = 22002.003692 eV Total energy + Delta-G solvation = -3952.312313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28382 -39.70834 -38.96173 -37.50078 -35.87146 -34.27406 -33.07737 -32.48385 -30.79338 -29.25979 -26.73751 -26.37217 -25.48657 -23.73363 -22.78448 -21.24324 -20.69880 -20.15638 -19.07842 -18.24975 -17.57156 -17.30691 -16.59035 -16.34107 -15.90605 -15.59273 -15.44405 -15.38823 -15.11852 -14.85386 -14.56276 -14.29991 -13.97492 -13.87016 -13.45337 -13.22022 -13.14920 -12.75489 -12.63938 -12.34341 -12.12105 -11.92218 -11.86867 -11.37500 -11.10512 -11.08091 -10.82018 -10.68019 -10.60083 -10.53142 -10.42571 -10.01205 -9.88702 -9.59398 -9.18491 -9.14264 -9.09704 -8.31972 -6.57147 -6.26962 -3.98523 2.09114 2.28035 2.82263 2.91751 3.19678 3.21738 3.23943 3.25499 3.28384 3.34732 3.49850 3.73902 3.82101 4.08610 4.14996 4.22766 4.34913 4.53663 4.62566 4.84271 4.93519 4.95802 4.98869 5.06194 5.08389 5.19649 5.22128 5.22990 5.23850 5.26529 5.32300 5.37175 5.45506 5.54211 5.56749 5.63157 5.77614 5.77803 6.02760 6.28051 7.03674 7.27773 7.41694 7.53947 7.80913 8.29310 8.40911 9.18350 10.80338 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.001733 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.384766 B =16154.346169 C =16790.021572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.155 4.155 11 C 0.535 3.465 12 O -0.511 6.511 13 N -0.741 5.741 14 C 0.109 3.891 15 C 0.085 3.915 16 O -0.523 6.523 17 C 0.120 3.880 18 N -0.638 5.638 19 C 0.575 3.425 20 O -0.532 6.532 21 C -0.136 4.136 22 H 0.123 0.877 23 C -0.097 4.097 24 C -0.203 4.203 25 C -0.113 4.113 26 C -0.128 4.128 27 C 0.074 3.926 28 H 0.270 0.730 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.394 0.606 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.382 0.618 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.930 -22.962 5.686 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.384 6.384 13 N -0.398 5.398 14 C -0.017 4.017 15 C 0.042 3.958 16 O -0.329 6.329 17 C -0.003 4.003 18 N -0.373 5.373 19 C 0.365 3.635 20 O -0.408 6.408 21 C -0.157 4.157 22 H 0.141 0.859 23 C -0.135 4.135 24 C -0.204 4.204 25 C -0.150 4.150 26 C -0.165 4.165 27 C -0.050 4.050 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.228 0.772 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.231 0.769 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.763 -24.607 5.296 28.221 hybrid contribution 2.382 2.132 0.222 3.204 sum 15.145 -22.475 5.518 27.657 Atomic orbital electron populations 1.69998 1.05964 1.27660 1.46580 1.24988 0.95029 0.99048 0.94444 0.86223 0.79247 0.81213 0.78808 1.19915 1.20787 1.19934 1.22816 0.94869 0.91601 1.59324 0.90923 1.85430 1.04670 0.96358 1.96747 1.23538 1.06805 0.95114 1.05061 1.20333 0.86440 0.86166 0.74907 1.90727 1.15289 1.85471 1.46915 1.45923 1.09791 1.05272 1.78855 1.21711 0.94998 0.80655 1.04298 1.22685 0.88799 0.95182 0.89127 1.86593 1.56865 1.32102 1.57365 1.23009 0.91446 0.90758 0.95056 1.49257 1.35688 1.11952 1.40396 1.19189 0.80555 0.81368 0.82423 1.90715 1.70019 1.26472 1.53588 1.21851 0.92374 1.01756 0.99718 0.85936 1.22681 0.92234 0.97768 1.00777 1.21206 1.04012 0.89815 1.05321 1.22614 1.02991 0.90903 0.98490 1.22781 1.02184 1.00232 0.91298 1.23921 1.02654 0.80831 0.97573 0.92062 0.89084 0.89041 0.77171 0.89798 0.89700 0.76889 0.89007 0.87679 0.87970 0.87410 0.88196 0.88414 0.88179 0.88465 0.88154 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.48 13.22 55.49 0.73 -24.75 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.75 9.50 30.94 0.29 -14.45 16 8 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 10 C -0.15 -2.81 6.16 36.01 0.22 -2.58 16 11 C 0.54 8.70 7.85 -10.99 -0.09 8.61 16 12 O -0.51 -10.55 15.86 5.56 0.09 -10.46 16 13 N -0.74 -7.56 5.34 -60.30 -0.32 -7.88 16 14 C 0.11 0.96 5.42 -4.04 -0.02 0.93 16 15 C 0.09 0.62 1.74 -89.97 -0.16 0.46 16 16 O -0.52 -4.27 13.56 -35.23 -0.48 -4.75 16 17 C 0.12 1.00 8.04 -8.50 -0.07 0.93 16 18 N -0.64 -5.91 3.69 -185.02 -0.68 -6.59 16 19 C 0.57 6.50 7.86 -10.99 -0.09 6.41 16 20 O -0.53 -7.93 17.02 5.55 0.09 -7.84 16 21 C -0.14 -1.16 6.01 -91.77 -0.55 -1.71 16 22 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 23 C -0.10 -0.72 10.24 -26.69 -0.27 -0.99 16 24 C -0.20 -1.71 5.06 -154.48 -0.78 -2.49 16 25 C -0.11 -0.92 10.16 -26.73 -0.27 -1.19 16 26 C -0.13 -0.82 10.53 -26.73 -0.28 -1.10 16 27 C 0.07 0.47 7.86 -8.37 -0.07 0.41 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 30 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 31 H 0.39 2.69 6.95 -40.82 -0.28 2.40 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 34 H 0.38 1.93 7.20 45.56 0.33 2.25 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.11 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.52 7.93 -51.93 -0.41 0.11 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -37.53 393.95 -9.90 -47.44 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.81 Total: 1.67 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.22 Total: -4.79 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.27 Total: -39.23 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.30 Total: -23.05 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.53 -9.90 -47.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041570442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.366 kcal (2) G-P(sol) polarization free energy of solvation -37.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds