Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00301 * 2 1 4 4 H 1.48502 * 109.47585 * 240.00520 * 3 2 1 5 5 H 1.48505 * 109.46723 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47526 * 120.00089 * 3 2 1 7 7 C 1.38799 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00706 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99769 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99994 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00305 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99984 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99895 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46997 * 180.02562 * 14 13 11 16 16 O 1.42897 * 113.28022 * 313.06571 * 15 14 13 17 17 C 1.53501 * 114.20418 * 180.02562 * 15 14 13 18 18 N 1.47070 * 87.98383 * 220.34240 * 17 15 14 19 19 C 1.34775 * 136.06126 * 207.08735 * 18 17 15 20 20 O 1.21286 * 119.99711 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00215 * 179.97438 * 19 18 17 22 22 H 1.09002 * 115.54932 * 34.41541 * 21 19 18 23 23 C 1.53005 * 117.49759 * 248.74266 * 21 19 18 24 24 C 1.52995 * 117.49757 * 180.08595 * 21 19 18 25 25 C 1.52999 * 138.58973 * 336.62058 * 24 21 19 26 26 C 1.52992 * 138.58961 * 238.40159 * 24 21 19 27 27 C 1.47070 * 87.88337 * 27.34099 * 18 17 15 28 28 H 0.97004 * 120.00149 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46689 * 60.00488 * 10 9 7 30 30 H 1.08990 * 109.47663 * 300.00352 * 10 9 7 31 31 H 0.97001 * 119.99998 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47421 * 60.00697 * 14 13 11 33 33 H 1.08996 * 109.47634 * 300.00154 * 14 13 11 34 34 H 0.96702 * 113.99762 * 46.93671 * 16 15 14 35 35 H 1.09004 * 113.46591 * 105.56745 * 17 15 14 36 36 H 1.08993 * 113.52535 * 335.12837 * 17 15 14 37 37 H 1.09000 * 117.49916 * 359.97438 * 23 21 19 38 38 H 1.08999 * 117.49608 * 144.97308 * 23 21 19 39 39 H 1.08994 * 117.49863 * 336.59580 * 25 24 21 40 40 H 1.08996 * 117.49928 * 121.61806 * 25 24 21 41 41 H 1.08994 * 117.50298 * 238.38849 * 26 24 21 42 42 H 1.09006 * 117.49909 * 23.41082 * 26 24 21 43 43 H 1.09001 * 113.46246 * 87.43621 * 27 18 17 44 44 H 1.09000 * 113.46965 * 217.87450 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7911 -5.5023 -0.0009 13 7 2.8441 -6.3431 -0.0033 14 6 2.3304 -7.7150 -0.0034 15 6 3.5025 -8.6985 -0.0046 16 8 4.5105 -8.3746 -0.9642 17 6 3.0846 -10.1756 -0.0055 18 7 4.1770 -10.4314 0.9453 19 6 4.9580 -11.4818 1.2664 20 8 4.8169 -12.5405 0.6917 21 6 6.0073 -11.3406 2.3388 22 1 5.7477 -10.6807 3.1666 23 6 7.4733 -11.3840 1.9028 24 6 6.8630 -12.5686 2.6559 25 6 6.7787 -14.0907 2.5254 26 6 7.1928 -13.4586 3.8558 27 6 4.0379 -9.0384 1.3960 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7317 0.8875 30 1 3.1238 -3.7310 -0.8924 31 1 3.8009 -6.1835 -0.0043 32 1 1.7208 -7.8747 -0.8928 33 1 1.7227 -7.8756 0.8871 34 1 4.7715 -7.4434 -0.9614 35 1 3.2242 -10.6656 -0.9692 36 1 2.0939 -10.3477 0.4151 37 1 7.6788 -11.5150 0.8404 38 1 8.1780 -10.7522 2.4435 39 1 5.7858 -14.5366 2.4675 40 1 7.5530 -14.5896 1.9427 41 1 8.2394 -13.5416 4.1484 42 1 6.4722 -13.4887 4.6732 43 1 3.2984 -8.9098 2.1863 44 1 4.9896 -8.5596 1.6265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041570442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -38.978456 kcal Electronic energy + Delta-G solvation = -25955.569501 eV Core-core repulsion = 22002.003692 eV Total energy + Delta-G solvation = -3953.565809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99806 -40.65899 -39.94703 -38.22306 -36.64302 -35.29440 -34.55327 -33.67533 -31.83076 -30.36788 -27.75340 -27.34201 -27.07775 -24.41034 -23.32135 -21.94454 -21.85602 -20.76103 -20.00073 -19.66755 -18.49418 -18.25308 -17.67642 -17.23673 -16.84952 -16.63173 -16.60477 -16.42820 -15.93349 -15.88119 -15.78042 -15.31076 -15.02361 -14.68967 -14.56276 -14.32725 -14.14909 -13.98405 -13.52965 -13.18875 -13.13841 -12.94530 -12.84026 -12.71422 -12.61932 -12.39977 -12.09378 -11.71498 -11.35053 -11.19071 -11.11581 -11.10125 -11.00860 -10.96613 -10.74622 -10.23400 -10.18334 -9.87828 -8.62770 -8.31896 -6.09211 1.28656 1.33464 1.45861 1.48428 1.56118 1.62304 1.63181 2.18670 2.30738 2.66197 2.68002 2.77402 3.02611 3.05829 3.26331 3.34678 3.45667 3.57791 3.77394 3.89446 4.00660 4.04735 4.25310 4.36027 4.40139 4.45275 4.46254 4.53739 4.57589 4.62669 4.67374 4.70107 4.73404 4.75668 4.76393 4.82019 4.98056 5.00037 5.23329 5.30391 5.44982 6.22396 6.39424 6.56461 6.59455 7.01170 7.09972 7.23043 8.76750 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.001733 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.384766 B =16154.346169 C =16790.021572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.154 6.154 10 C -0.131 4.131 11 C 0.540 3.460 12 O -0.561 6.561 13 N -0.711 5.711 14 C 0.113 3.887 15 C 0.101 3.899 16 O -0.538 6.538 17 C 0.108 3.892 18 N -0.641 5.641 19 C 0.564 3.436 20 O -0.583 6.583 21 C -0.140 4.140 22 H 0.146 0.854 23 C -0.086 4.086 24 C -0.228 4.228 25 C -0.133 4.133 26 C -0.104 4.104 27 C 0.080 3.920 28 H 0.270 0.730 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.415 0.585 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.395 0.605 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.822 -22.248 7.008 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.073 5.927 10 C -0.282 4.282 11 C 0.326 3.674 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.012 4.012 15 C 0.058 3.942 16 O -0.347 6.347 17 C -0.015 4.015 18 N -0.375 5.375 19 C 0.355 3.645 20 O -0.463 6.463 21 C -0.160 4.160 22 H 0.163 0.837 23 C -0.123 4.123 24 C -0.229 4.229 25 C -0.170 4.170 26 C -0.141 4.141 27 C -0.042 4.042 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.253 0.747 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.153 0.847 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.715 -23.884 6.623 29.348 hybrid contribution 1.511 1.768 -0.247 2.339 sum 17.226 -22.117 6.376 28.750 Atomic orbital electron populations 1.70171 1.07960 1.28588 1.48062 1.26091 0.95906 1.03264 0.93848 0.85043 0.77814 0.75898 0.79492 1.18736 1.20711 1.18584 1.23185 0.95412 0.92022 1.58730 0.89702 1.85616 1.10687 0.99300 1.97070 1.23383 1.03537 0.94112 1.07180 1.19989 0.86101 0.86504 0.74848 1.90723 1.17473 1.85992 1.49705 1.45524 1.10267 1.04624 1.76334 1.21760 0.95587 0.79580 1.04266 1.22423 0.88126 0.93766 0.89838 1.86592 1.56858 1.33480 1.57745 1.23217 0.92365 0.91370 0.94500 1.49357 1.35203 1.12701 1.40243 1.19773 0.81049 0.81028 0.82605 1.90684 1.71560 1.28479 1.55551 1.21918 0.92074 1.02522 0.99533 0.83676 1.22746 0.91871 0.97402 1.00254 1.21488 1.04642 0.89861 1.06913 1.22610 1.02319 0.91352 1.00703 1.22865 1.03402 0.97473 0.90318 1.24094 1.04223 0.78833 0.97081 0.92089 0.86677 0.86959 0.74695 0.90916 0.88886 0.75292 0.90869 0.85836 0.89358 0.84672 0.90066 0.88079 0.86257 0.87721 0.86177 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.56 13.22 21.65 0.29 -54.27 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 42.03 29.55 68.60 2.03 44.06 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.55 -29.70 9.50 67.95 0.65 -29.06 16 8 H 0.08 4.23 7.80 -2.91 -0.02 4.20 16 9 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 10 C -0.13 -4.50 6.16 71.24 0.44 -4.06 16 11 C 0.54 16.61 7.85 87.66 0.69 17.29 16 12 O -0.56 -23.12 15.86 -3.03 -0.05 -23.17 16 13 N -0.71 -12.38 5.34 -463.07 -2.47 -14.86 16 14 C 0.11 1.72 5.42 86.38 0.47 2.19 16 15 C 0.10 1.23 1.74 -10.37 -0.02 1.22 16 16 O -0.54 -7.45 13.56 -148.98 -2.02 -9.47 16 17 C 0.11 1.69 8.04 83.18 0.67 2.36 16 18 N -0.64 -10.95 3.69 -858.15 -3.16 -14.11 16 19 C 0.56 12.50 7.86 87.66 0.69 13.19 16 20 O -0.58 -18.07 17.02 -3.05 -0.05 -18.12 16 21 C -0.14 -2.14 6.01 -11.54 -0.07 -2.21 16 22 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 23 C -0.09 -1.10 10.24 30.62 0.31 -0.79 16 24 C -0.23 -3.57 5.06 -52.16 -0.26 -3.83 16 25 C -0.13 -2.17 10.16 30.60 0.31 -1.86 16 26 C -0.10 -1.14 10.53 30.59 0.32 -0.81 16 27 C 0.08 0.76 7.86 83.27 0.65 1.41 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.12 3.42 8.14 -2.39 -0.02 3.41 16 30 H 0.11 3.41 8.14 -2.40 -0.02 3.39 16 31 H 0.41 3.93 6.95 -92.71 -0.64 3.29 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.38 7.89 -2.39 -0.02 1.36 16 34 H 0.40 2.64 7.20 -74.06 -0.53 2.11 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.12 1.44 8.10 -2.39 -0.02 1.42 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.14 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.12 0.75 7.93 -2.39 -0.02 0.74 16 44 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -85.77 393.95 -1.43 -87.20 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.14 Total: 15.67 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.31 Total: -3.73 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -5.35 Total: -83.24 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -2.12 Total: -50.76 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -85.77 -1.43 -87.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041570442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.221 kcal (2) G-P(sol) polarization free energy of solvation -85.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds