Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86806 * 119.99978 * 2 1 4 4 H 1.48502 * 109.46821 * 239.99864 * 3 2 1 5 5 H 1.48503 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47267 * 119.99722 * 3 2 1 7 7 C 1.38796 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99714 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00200 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00204 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47303 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.47785 * 134.40567 * 179.97438 * 13 11 10 15 15 C 1.52873 * 85.78673 * 156.11727 * 14 13 11 16 16 C 1.47784 * 134.40080 * 359.97438 * 13 11 10 17 17 C 1.53469 * 115.59837 * 140.25240 * 15 14 13 18 18 C 1.54736 * 103.72499 * 152.76422 * 17 15 14 19 19 H 1.08998 * 110.50578 * 241.97993 * 18 17 15 20 20 N 1.46497 * 110.50841 * 119.40940 * 18 17 15 21 21 C 1.34777 * 119.99525 * 154.99741 * 20 18 17 22 22 O 1.21283 * 120.00463 * 0.02562 * 21 20 18 23 23 C 1.50700 * 119.99675 * 179.72583 * 21 20 18 24 24 C 1.53002 * 117.49942 * 249.02519 * 23 21 20 25 25 C 1.53005 * 117.50073 * 180.36469 * 23 21 20 26 26 C 1.54550 * 104.07233 * 0.76148 * 18 17 15 27 27 O 1.43246 * 115.86003 * 265.50585 * 15 14 13 28 28 H 0.97002 * 119.99428 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47708 * 59.99696 * 10 9 7 30 30 H 1.09001 * 109.47037 * 299.99689 * 10 9 7 31 31 H 1.09000 * 113.82115 * 41.90266 * 14 13 11 32 32 H 1.09001 * 113.81889 * 270.33835 * 14 13 11 33 33 H 1.09003 * 113.82564 * 89.66176 * 16 13 11 34 34 H 1.09005 * 113.82577 * 318.09299 * 16 13 11 35 35 H 1.09005 * 110.57170 * 34.19982 * 17 15 14 36 36 H 1.08997 * 110.57353 * 271.32869 * 17 15 14 37 37 H 0.97000 * 120.00580 * 335.00487 * 20 18 17 38 38 H 1.09001 * 115.55204 * 34.69144 * 23 21 20 39 39 H 1.09008 * 117.49817 * 359.97438 * 24 23 21 40 40 H 1.08992 * 117.50462 * 145.01758 * 24 23 21 41 41 H 1.08994 * 117.50196 * 214.97848 * 25 23 21 42 42 H 1.09009 * 117.49229 * 359.97438 * 25 23 21 43 43 H 1.09002 * 110.32512 * 95.26140 * 26 18 17 44 44 H 1.09000 * 110.32366 * 217.48005 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.6866 -7.8125 0.0039 15 6 4.0854 -7.8499 -0.6118 16 6 4.3166 -6.4701 0.0050 17 6 5.0053 -8.9667 -0.1003 18 6 5.9678 -9.2209 -1.2849 19 1 5.8607 -10.2417 -1.6516 20 7 7.3533 -8.9632 -0.8849 21 6 8.3662 -9.5707 -1.5342 22 8 8.1307 -10.3303 -2.4499 23 6 9.7918 -9.3008 -1.1268 24 6 10.6684 -8.5133 -2.1026 25 6 10.8970 -10.0143 -1.9081 26 6 5.5169 -8.2062 -2.3599 27 8 4.1371 -7.9112 -2.0420 28 1 -0.4849 0.8401 -0.0004 29 1 3.1239 -3.7309 0.8924 30 1 3.1252 -3.7317 -0.8875 31 1 1.9025 -8.1714 -0.6628 32 1 2.6326 -8.2490 1.0012 33 1 4.7547 -6.5015 1.0026 34 1 4.8198 -5.7689 -0.6608 35 1 4.4293 -9.8644 0.1248 36 1 5.5585 -8.6350 0.7784 37 1 7.5418 -8.3555 -0.1527 38 1 9.9534 -9.1381 -0.0612 39 1 10.2141 -8.1907 -3.0395 40 1 11.4070 -7.8327 -1.6791 41 1 11.7858 -10.3207 -1.3566 42 1 10.5929 -10.6793 -2.7165 43 1 6.1207 -7.3005 -2.3026 44 1 5.5903 -8.6491 -3.3531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068642356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = -43.328985 kcal Electronic energy + Delta-G solvation = -26508.428641 eV Core-core repulsion = 22554.674179 eV Total energy + Delta-G solvation = -3953.754462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42267 -40.27497 -38.66815 -36.93671 -36.36671 -35.02653 -32.43405 -31.49686 -30.33887 -28.49326 -26.68795 -25.82592 -25.31840 -25.11564 -22.94886 -21.78093 -20.93091 -20.57028 -19.09996 -18.10379 -17.73291 -17.08028 -16.68185 -16.33213 -16.18583 -15.59671 -15.35573 -15.21651 -15.00256 -14.80941 -14.71509 -14.20423 -13.85252 -13.59611 -13.47158 -13.06763 -12.88550 -12.76206 -12.52941 -12.30378 -12.21673 -12.06604 -11.86455 -11.36834 -11.32427 -11.15040 -11.04838 -11.04597 -11.03749 -10.77165 -10.33999 -10.18113 -9.83509 -9.60654 -9.35547 -9.06558 -8.64871 -8.24584 -6.50791 -6.21790 -3.92733 1.98197 2.48721 2.69487 3.04057 3.21357 3.22762 3.27846 3.31090 3.35998 3.55962 3.83284 4.01751 4.09978 4.18056 4.19779 4.26540 4.35172 4.54743 4.58896 4.66612 4.73283 5.00097 5.04833 5.09777 5.12983 5.16824 5.20740 5.22926 5.29100 5.33881 5.40535 5.42947 5.43880 5.48933 5.58659 5.61215 5.87049 5.90849 5.98441 6.13095 6.49046 6.93468 7.58422 7.70601 7.77413 8.34391 8.53733 9.22986 10.85583 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.002168 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.662988 B =12910.866065 C =14426.651105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.558 3.442 12 O -0.513 6.513 13 N -0.646 5.646 14 C 0.122 3.878 15 C 0.067 3.933 16 C 0.089 3.911 17 C -0.144 4.144 18 C 0.113 3.887 19 H 0.108 0.892 20 N -0.718 5.718 21 C 0.545 3.455 22 O -0.537 6.537 23 C -0.198 4.198 24 C -0.152 4.152 25 C -0.148 4.148 26 C 0.034 3.966 27 O -0.331 6.331 28 H 0.269 0.731 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.404 0.596 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.526 -21.395 0.864 31.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.348 3.652 12 O -0.387 6.387 13 N -0.385 5.385 14 C -0.001 4.001 15 C 0.026 3.974 16 C -0.035 4.035 17 C -0.183 4.183 18 C 0.008 3.992 19 H 0.126 0.874 20 N -0.371 5.371 21 C 0.331 3.669 22 O -0.413 6.413 23 C -0.219 4.219 24 C -0.189 4.189 25 C -0.185 4.185 26 C -0.044 4.044 27 O -0.248 6.248 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.239 0.761 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.028 -21.899 0.037 29.677 hybrid contribution 2.270 1.672 0.604 2.883 sum 22.298 -20.228 0.641 30.113 Atomic orbital electron populations 1.70012 1.05942 1.27575 1.46694 1.24998 0.95046 0.99019 0.94539 0.86216 0.79232 0.81223 0.78770 1.19939 1.20781 1.19952 1.22809 0.94833 0.91611 1.59136 0.91019 1.85413 1.04863 0.96273 1.96712 1.23464 1.06506 0.94787 1.04716 1.20014 0.85455 0.85121 0.74614 1.90717 1.14803 1.84922 1.48242 1.49926 1.06860 1.05631 1.76043 1.23027 0.95413 0.81225 1.00410 1.23168 0.96868 0.94132 0.83259 1.23587 0.83033 0.95935 1.00947 1.23004 0.97325 0.99902 0.98070 1.22401 0.80580 1.01437 0.94788 0.87402 1.45969 1.05364 1.48123 1.37637 1.19749 0.86088 0.79358 0.81655 1.90722 1.85021 1.36154 1.29406 1.22201 0.89918 1.10079 0.99718 1.22982 1.00953 0.95131 0.99831 1.22983 0.97749 0.95387 1.02388 1.23975 0.83049 0.97735 0.99688 1.89128 1.25919 1.91384 1.18413 0.92107 0.89419 0.89372 0.88956 0.88424 0.88762 0.89357 0.88400 0.88914 0.76060 0.85701 0.88115 0.87568 0.87808 0.87341 0.91430 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.14 -3.04 5.90 36.01 0.21 -2.83 16 11 C 0.56 11.22 8.07 -10.99 -0.09 11.13 16 12 O -0.51 -12.41 16.59 5.55 0.09 -12.32 16 13 N -0.65 -9.47 3.61 -184.05 -0.67 -10.13 16 14 C 0.12 1.35 8.37 -3.41 -0.03 1.32 16 15 C 0.07 0.60 1.28 -90.66 -0.12 0.48 16 16 C 0.09 0.86 8.12 -3.39 -0.03 0.83 16 17 C -0.14 -0.76 6.25 -25.57 -0.16 -0.92 16 18 C 0.11 0.75 3.49 -66.20 -0.23 0.52 16 19 H 0.11 0.86 7.55 -51.93 -0.39 0.46 16 20 N -0.72 -3.83 5.08 -52.14 -0.27 -4.09 16 21 C 0.54 4.12 7.61 -10.98 -0.08 4.04 16 22 O -0.54 -6.21 15.91 5.55 0.09 -6.12 16 23 C -0.20 -1.00 6.19 -91.77 -0.57 -1.56 16 24 C -0.15 -0.70 10.24 -26.69 -0.27 -0.97 16 25 C -0.15 -0.76 10.05 -26.69 -0.27 -1.03 16 26 C 0.03 0.29 7.37 37.97 0.28 0.57 16 27 O -0.33 -3.76 11.44 -35.23 -0.40 -4.17 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.64 7.96 -51.93 -0.41 0.22 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.09 0.29 7.39 -51.93 -0.38 -0.09 16 37 H 0.40 1.09 8.38 -40.82 -0.34 0.75 16 38 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.74 7.67 -51.92 -0.40 0.34 16 43 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -38.61 387.89 -9.50 -48.11 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.54 Total: -2.57 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.15 Total: -1.53 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: -0.20 Total: -39.81 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.22 Total: -22.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.61 -9.50 -48.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068642356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.781 kcal (2) G-P(sol) polarization free energy of solvation -38.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds