Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86806 * 119.99978 * 2 1 4 4 H 1.48502 * 109.46821 * 239.99864 * 3 2 1 5 5 H 1.48503 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47267 * 119.99722 * 3 2 1 7 7 C 1.38796 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99714 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00200 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00204 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47303 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.47785 * 134.40567 * 179.97438 * 13 11 10 15 15 C 1.52873 * 85.78673 * 156.11727 * 14 13 11 16 16 C 1.47784 * 134.40080 * 359.97438 * 13 11 10 17 17 C 1.53469 * 115.59837 * 140.25240 * 15 14 13 18 18 C 1.54736 * 103.72499 * 152.76422 * 17 15 14 19 19 H 1.08998 * 110.50578 * 241.97993 * 18 17 15 20 20 N 1.46497 * 110.50841 * 119.40940 * 18 17 15 21 21 C 1.34777 * 119.99525 * 154.99741 * 20 18 17 22 22 O 1.21283 * 120.00463 * 0.02562 * 21 20 18 23 23 C 1.50700 * 119.99675 * 179.72583 * 21 20 18 24 24 C 1.53002 * 117.49942 * 249.02519 * 23 21 20 25 25 C 1.53005 * 117.50073 * 180.36469 * 23 21 20 26 26 C 1.54550 * 104.07233 * 0.76148 * 18 17 15 27 27 O 1.43246 * 115.86003 * 265.50585 * 15 14 13 28 28 H 0.97002 * 119.99428 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47708 * 59.99696 * 10 9 7 30 30 H 1.09001 * 109.47037 * 299.99689 * 10 9 7 31 31 H 1.09000 * 113.82115 * 41.90266 * 14 13 11 32 32 H 1.09001 * 113.81889 * 270.33835 * 14 13 11 33 33 H 1.09003 * 113.82564 * 89.66176 * 16 13 11 34 34 H 1.09005 * 113.82577 * 318.09299 * 16 13 11 35 35 H 1.09005 * 110.57170 * 34.19982 * 17 15 14 36 36 H 1.08997 * 110.57353 * 271.32869 * 17 15 14 37 37 H 0.97000 * 120.00580 * 335.00487 * 20 18 17 38 38 H 1.09001 * 115.55204 * 34.69144 * 23 21 20 39 39 H 1.09008 * 117.49817 * 359.97438 * 24 23 21 40 40 H 1.08992 * 117.50462 * 145.01758 * 24 23 21 41 41 H 1.08994 * 117.50196 * 214.97848 * 25 23 21 42 42 H 1.09009 * 117.49229 * 359.97438 * 25 23 21 43 43 H 1.09002 * 110.32512 * 95.26140 * 26 18 17 44 44 H 1.09000 * 110.32366 * 217.48005 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.6866 -7.8125 0.0039 15 6 4.0854 -7.8499 -0.6118 16 6 4.3166 -6.4701 0.0050 17 6 5.0053 -8.9667 -0.1003 18 6 5.9678 -9.2209 -1.2849 19 1 5.8607 -10.2417 -1.6516 20 7 7.3533 -8.9632 -0.8849 21 6 8.3662 -9.5707 -1.5342 22 8 8.1307 -10.3303 -2.4499 23 6 9.7918 -9.3008 -1.1268 24 6 10.6684 -8.5133 -2.1026 25 6 10.8970 -10.0143 -1.9081 26 6 5.5169 -8.2062 -2.3599 27 8 4.1371 -7.9112 -2.0420 28 1 -0.4849 0.8401 -0.0004 29 1 3.1239 -3.7309 0.8924 30 1 3.1252 -3.7317 -0.8875 31 1 1.9025 -8.1714 -0.6628 32 1 2.6326 -8.2490 1.0012 33 1 4.7547 -6.5015 1.0026 34 1 4.8198 -5.7689 -0.6608 35 1 4.4293 -9.8644 0.1248 36 1 5.5585 -8.6350 0.7784 37 1 7.5418 -8.3555 -0.1527 38 1 9.9534 -9.1381 -0.0612 39 1 10.2141 -8.1907 -3.0395 40 1 11.4070 -7.8327 -1.6791 41 1 11.7858 -10.3207 -1.3566 42 1 10.5929 -10.6793 -2.7165 43 1 6.1207 -7.3005 -2.3026 44 1 5.5903 -8.6491 -3.3531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001068642356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -72.802191 kcal Electronic energy + Delta-G solvation = -26509.706695 eV Core-core repulsion = 22554.674179 eV Total energy + Delta-G solvation = -3955.032517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.22449 -40.94977 -39.89353 -37.84092 -37.00670 -35.68617 -34.60310 -32.41928 -31.47463 -29.59730 -27.72293 -27.52837 -26.56110 -25.61329 -23.29862 -22.39875 -21.70918 -21.17406 -20.40516 -19.53749 -18.59307 -18.14783 -17.58140 -17.22965 -17.11430 -16.89499 -16.44287 -16.32481 -16.12252 -15.96920 -15.61761 -15.34473 -14.93067 -14.62884 -14.51090 -14.36987 -13.68398 -13.59272 -13.51443 -13.39500 -13.20876 -13.04112 -12.87346 -12.81242 -12.63921 -12.42840 -12.15190 -11.97662 -11.76810 -11.51372 -11.42665 -11.14296 -11.05872 -10.93175 -10.77961 -10.31953 -10.15597 -9.82319 -8.70951 -8.35826 -6.15557 1.18637 1.41578 1.43603 1.44353 1.53015 1.54461 1.89774 2.04072 2.25979 2.62509 2.93900 2.97990 3.15226 3.18205 3.39732 3.49375 3.67090 3.75117 3.89415 3.97342 4.00011 4.09132 4.20805 4.25651 4.31105 4.36180 4.40834 4.47686 4.52436 4.54400 4.69074 4.71868 4.77684 4.83640 4.87183 4.96590 4.98263 5.06632 5.24302 5.38176 5.39207 5.80545 6.17804 6.50780 6.51772 7.04540 7.06861 7.21916 8.73294 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.002168 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.662988 B =12910.866065 C =14426.651105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.116 4.116 11 C 0.553 3.447 12 O -0.571 6.571 13 N -0.648 5.648 14 C 0.114 3.886 15 C 0.075 3.925 16 C 0.087 3.913 17 C -0.127 4.127 18 C 0.120 3.880 19 H 0.093 0.907 20 N -0.701 5.701 21 C 0.538 3.462 22 O -0.586 6.586 23 C -0.195 4.195 24 C -0.147 4.147 25 C -0.158 4.158 26 C 0.032 3.968 27 O -0.366 6.366 28 H 0.272 0.728 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.422 0.578 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.298 -21.385 2.904 34.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.267 4.267 11 C 0.342 3.658 12 O -0.451 6.451 13 N -0.384 5.384 14 C -0.007 4.007 15 C 0.034 3.966 16 C -0.034 4.034 17 C -0.165 4.165 18 C 0.014 3.986 19 H 0.111 0.889 20 N -0.355 5.355 21 C 0.327 3.673 22 O -0.466 6.466 23 C -0.215 4.215 24 C -0.184 4.184 25 C -0.195 4.195 26 C -0.045 4.045 27 O -0.285 6.285 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.147 0.853 37 H 0.260 0.740 38 H 0.175 0.825 39 H 0.103 0.897 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 23.871 -21.919 2.105 32.477 hybrid contribution 1.158 1.502 -0.097 1.899 sum 25.029 -20.417 2.008 32.363 Atomic orbital electron populations 1.70189 1.08038 1.28739 1.47795 1.26186 0.96021 1.03447 0.93644 0.84964 0.77779 0.75422 0.79574 1.18715 1.20372 1.18335 1.23145 0.95305 0.91768 1.59190 0.89861 1.85623 1.10562 0.99363 1.97041 1.23242 1.03393 0.93933 1.06179 1.19766 0.85272 0.85849 0.74938 1.90685 1.17196 1.85728 1.51446 1.49989 1.08990 1.06128 1.73323 1.23438 0.96300 0.78677 1.02325 1.23099 0.96029 0.95163 0.82313 1.24081 0.79733 0.96036 1.03564 1.22973 0.96297 0.98966 0.98249 1.22206 0.81537 0.99973 0.94890 0.88898 1.45824 1.04402 1.47703 1.37531 1.20277 0.87465 0.78635 0.80957 1.90709 1.85812 1.38420 1.31615 1.22311 0.88006 1.09873 1.01335 1.23038 1.01064 0.95087 0.99251 1.23016 0.98741 0.95486 1.02271 1.24020 0.82088 0.98512 0.99930 1.89109 1.27522 1.91638 1.20187 0.91944 0.87173 0.88273 0.91129 0.84723 0.84212 0.89341 0.86948 0.85264 0.73985 0.82529 0.89709 0.85272 0.85734 0.89847 0.90754 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.58 29.55 68.60 2.03 45.60 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.55 -31.57 9.50 67.95 0.65 -30.93 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 10 C -0.12 -4.88 5.90 71.24 0.42 -4.46 16 11 C 0.55 22.27 8.07 87.66 0.71 22.98 16 12 O -0.57 -28.75 16.59 -3.05 -0.05 -28.80 16 13 N -0.65 -17.90 3.61 -860.86 -3.11 -21.01 16 14 C 0.11 2.29 8.37 86.09 0.72 3.01 16 15 C 0.07 1.12 1.28 -10.66 -0.01 1.10 16 16 C 0.09 1.36 8.12 86.10 0.70 2.05 16 17 C -0.13 -0.80 6.25 31.34 0.20 -0.60 16 18 C 0.12 1.30 3.49 46.11 0.16 1.46 16 19 H 0.09 1.37 7.55 -2.39 -0.02 1.35 16 20 N -0.70 -5.29 5.08 -437.25 -2.22 -7.51 16 21 C 0.54 7.22 7.61 87.66 0.67 7.89 16 22 O -0.59 -13.59 15.91 -3.04 -0.05 -13.64 16 23 C -0.19 -1.44 6.19 -11.54 -0.07 -1.51 16 24 C -0.15 -1.05 10.24 30.62 0.31 -0.74 16 25 C -0.16 -1.40 10.05 30.62 0.31 -1.09 16 26 C 0.03 0.52 7.37 72.51 0.53 1.05 16 27 O -0.37 -7.99 11.44 -148.98 -1.70 -9.70 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 30 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.14 1.01 7.96 -2.39 -0.02 0.99 16 34 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.11 0.51 8.12 -2.38 -0.02 0.49 16 36 H 0.13 -0.06 7.39 -2.39 -0.02 -0.07 16 37 H 0.42 0.27 8.38 -92.71 -0.78 -0.51 16 38 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.08 1.17 7.67 -2.38 -0.02 1.16 16 43 H 0.07 1.06 8.06 -2.39 -0.02 1.05 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -91.10 387.89 0.01 -91.09 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.24 Total: 8.84 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.75 Total: 1.35 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -5.05 Total: -84.81 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -1.80 Total: -52.13 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -91.10 0.01 -91.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068642356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.286 kcal (2) G-P(sol) polarization free energy of solvation -91.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds