Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35788 * 117.00076 * 2 1 4 4 C 1.40344 * 120.90717 * 89.99593 * 3 2 1 5 5 O 1.35556 * 120.48534 * 0.02562 * 4 3 2 6 6 N 1.32403 * 119.02450 * 179.97438 * 4 3 2 7 7 C 1.32486 * 120.97994 * 359.97438 * 6 4 3 8 8 O 1.35546 * 118.99533 * 180.02562 * 7 6 4 9 9 N 1.31864 * 122.01072 * 359.97438 * 7 6 4 10 10 C 1.33525 * 120.87255 * 0.02562 * 9 7 6 11 11 C 1.48060 * 120.53984 * 179.97438 * 10 9 7 12 12 O 1.21526 * 120.00230 * 179.97438 * 11 10 9 13 13 N 1.34774 * 119.99735 * 0.02562 * 11 10 9 14 14 C 1.46500 * 120.00138 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.88346 * 34.30104 * 14 13 11 16 16 C 1.54907 * 111.00826 * 270.42125 * 14 13 11 17 17 N 1.47467 * 104.81371 * 204.94807 * 16 14 13 18 18 C 1.36940 * 125.62673 * 204.14682 * 17 16 14 19 19 H 1.07999 * 120.00146 * 359.93350 * 18 17 16 20 20 C 1.38812 * 119.99696 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47540 * 89.99588 * 22 20 18 24 24 H 1.48502 * 109.46973 * 209.99928 * 22 20 18 25 25 H 1.48503 * 109.46982 * 329.99594 * 22 20 18 26 26 C 1.47019 * 108.72357 * 24.06441 * 17 16 14 27 27 C 1.54326 * 107.26904 * 358.98314 * 26 17 16 28 28 H 1.08999 * 110.72567 * 96.16903 * 27 26 17 29 29 O 1.42904 * 110.71605 * 219.43986 * 27 26 17 30 30 H 1.08997 * 109.47512 * 300.00649 * 1 2 3 31 31 H 1.09002 * 109.46856 * 60.00200 * 1 2 3 32 32 H 1.08992 * 109.47565 * 179.97438 * 1 2 3 33 33 H 0.96704 * 114.00334 * 269.97509 * 5 4 3 34 34 H 0.96695 * 113.99884 * 269.97709 * 8 7 6 35 35 H 0.97003 * 120.00554 * 0.02562 * 13 11 10 36 36 H 1.09000 * 110.36899 * 323.75531 * 16 14 13 37 37 H 1.09005 * 110.36864 * 86.07192 * 16 14 13 38 38 H 0.97000 * 119.99920 * 180.02562 * 21 20 18 39 39 H 1.08994 * 109.88796 * 239.56227 * 26 17 16 40 40 H 1.09003 * 110.00474 * 118.46138 * 26 17 16 41 41 H 0.96703 * 113.99898 * 293.51971 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3727 1.8522 1.2042 5 8 2.0784 1.2737 2.3942 6 7 2.9739 3.0311 1.1607 7 6 3.2674 3.6046 0.0030 8 8 3.8837 4.8118 0.0054 9 7 2.9792 3.0364 -1.1515 10 6 2.3729 1.8476 -1.1977 11 6 2.0522 1.2166 -2.4981 12 8 1.5007 0.1341 -2.5287 13 7 2.3728 1.8423 -3.6479 14 6 2.0560 1.2178 -4.9347 15 1 1.1246 0.6548 -4.8746 16 6 3.2199 0.3157 -5.4157 17 7 3.0750 0.2633 -6.8823 18 6 3.5448 -0.7336 -7.6952 19 1 4.0740 -1.5732 -7.2693 20 6 3.3415 -0.6644 -9.0666 21 7 2.6968 0.3590 -9.5856 22 14 3.9829 -2.0239 -10.1756 23 1 2.9429 -3.0733 -10.3248 24 1 4.3126 -1.4604 -11.5094 25 1 5.2035 -2.6187 -9.5741 26 6 2.3411 1.4571 -7.3270 27 6 1.9935 2.2771 -6.0667 28 1 2.7314 3.0621 -5.9015 29 8 0.6797 2.8299 -6.1697 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2059 1.5069 2.7399 34 1 3.2758 5.5638 0.0053 35 1 2.8140 2.7059 -3.6236 36 1 4.1790 0.7574 -5.1452 37 1 3.1273 -0.6829 -4.9887 38 1 2.5544 0.4071 -10.5439 39 1 1.4265 1.1604 -7.8402 40 1 2.9650 2.0510 -7.9951 41 1 0.5872 3.4976 -6.8631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077999510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -92.649652 kcal Electronic energy + Delta-G solvation = -30033.294808 eV Core-core repulsion = 25531.108426 eV Total energy + Delta-G solvation = -4502.186382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.03999 -39.78209 -39.18077 -38.18521 -37.68377 -37.06933 -35.11083 -34.31383 -33.69601 -31.69331 -30.68716 -28.57923 -27.50633 -27.05016 -25.73824 -24.40787 -23.97956 -21.72322 -20.58968 -20.31948 -19.81121 -19.36398 -18.65541 -18.06531 -17.63056 -17.03873 -16.91473 -16.52664 -15.79311 -15.69698 -15.22004 -14.92649 -14.73797 -14.49445 -14.16065 -14.07172 -13.51464 -13.25950 -13.17362 -12.72251 -12.70264 -12.51911 -12.28214 -12.10810 -11.62615 -11.56820 -11.28595 -11.15543 -10.98052 -10.91526 -10.82342 -10.46010 -10.15267 -9.95955 -9.86118 -9.59582 -9.51461 -9.32298 -8.93410 -8.65626 -6.93280 -5.77581 -3.12102 -0.12482 0.09600 2.06798 2.49438 2.82557 2.94666 3.03129 3.31516 3.39370 3.44469 3.46115 3.89117 4.28108 4.31344 4.42676 4.58088 4.82113 4.89332 5.11991 5.13047 5.27375 5.41878 5.45824 5.55123 5.61652 5.77708 5.91208 6.01094 6.07856 6.40148 6.57184 6.62008 6.79262 6.82380 7.01555 7.25101 7.30462 7.44105 7.53560 7.72130 8.07154 8.09709 8.16966 9.13794 9.73629 10.36174 11.34229 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002746 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.812898 B =10193.750893 C =10763.993996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.293 6.293 3 C 0.031 3.969 4 C 0.370 3.630 5 O -0.457 6.457 6 N -0.522 5.522 7 C 0.512 3.488 8 O -0.448 6.448 9 N -0.490 5.490 10 C 0.150 3.850 11 C 0.566 3.434 12 O -0.500 6.500 13 N -0.687 5.687 14 C 0.137 3.863 15 H 0.108 0.892 16 C 0.130 3.870 17 N -0.599 5.599 18 C -0.229 4.229 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.924 5.924 22 Si 0.916 3.084 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.154 3.846 27 C 0.069 3.931 28 H 0.060 0.940 29 O -0.564 6.564 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.409 0.591 34 H 0.415 0.585 35 H 0.409 0.591 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.253 0.747 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 9.914 21.065 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.206 6.206 3 C -0.021 4.021 4 C 0.178 3.822 5 O -0.264 6.264 6 N -0.260 5.260 7 C 0.207 3.793 8 O -0.251 6.251 9 N -0.221 5.221 10 C 0.003 3.997 11 C 0.348 3.652 12 O -0.373 6.373 13 N -0.338 5.338 14 C 0.032 3.968 15 H 0.125 0.875 16 C 0.002 3.998 17 N -0.327 5.327 18 C -0.357 4.357 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.572 5.572 22 Si 0.746 3.254 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.028 3.972 27 C 0.009 3.991 28 H 0.078 0.922 29 O -0.369 6.369 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.269 0.731 34 H 0.275 0.725 35 H 0.245 0.755 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.811 8.785 21.225 23.470 hybrid contribution -0.485 0.212 -0.823 0.979 sum -5.296 8.997 20.402 22.918 Atomic orbital electron populations 1.23040 0.77429 1.04549 1.00169 1.86159 1.20589 1.20405 1.93440 1.20472 1.00520 0.89705 0.91425 1.19569 0.90998 0.85856 0.85744 1.84829 1.40955 1.67560 1.33017 1.67302 1.14584 1.11903 1.32227 1.19641 0.89004 0.88684 0.81954 1.84825 1.33529 1.11822 1.94906 1.67991 1.13042 1.10683 1.30376 1.22138 0.93357 0.89112 0.95103 1.17406 0.80435 0.85022 0.82372 1.90880 1.41075 1.19178 1.86149 1.45796 1.59500 1.23486 1.05029 1.22397 1.00714 0.94210 0.79502 0.87453 1.21868 0.94057 0.97534 0.86336 1.44246 1.65956 1.22823 0.99688 1.19099 1.29652 0.99066 0.87844 0.90082 1.24813 1.00547 0.98335 0.96639 1.69918 1.45914 1.30094 1.11236 0.86060 0.78440 0.80923 0.79994 1.21476 1.21645 1.20596 1.21826 0.97656 0.87269 0.90418 1.23455 0.83828 0.94575 0.97223 0.92201 1.86447 1.30627 1.60342 1.59452 0.94196 0.92607 0.87670 0.73125 0.72545 0.75532 0.95632 0.92889 0.93644 0.92019 0.93180 0.77539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.55 101.05 1.07 1.44 16 2 O -0.29 -3.72 8.78 -46.79 -0.41 -4.13 16 3 C 0.03 0.38 5.81 -38.29 -0.22 0.16 16 4 C 0.37 3.93 7.86 -16.51 -0.13 3.80 16 5 O -0.46 -3.76 13.42 -30.76 -0.41 -4.17 16 6 N -0.52 -5.80 10.46 -14.65 -0.15 -5.95 16 7 C 0.51 5.59 8.69 -91.50 -0.80 4.79 16 8 O -0.45 -3.80 13.64 -18.33 -0.25 -4.05 16 9 N -0.49 -5.93 9.72 -11.31 -0.11 -6.04 16 10 C 0.15 1.99 6.79 -82.60 -0.56 1.43 16 11 C 0.57 8.86 7.81 -12.23 -0.10 8.77 16 12 O -0.50 -9.06 13.91 -16.06 -0.22 -9.28 16 13 N -0.69 -10.55 5.21 -52.60 -0.27 -10.82 16 14 C 0.14 2.52 3.09 -65.78 -0.20 2.32 16 15 H 0.11 2.21 7.63 -51.93 -0.40 1.81 16 16 C 0.13 2.76 6.93 -2.51 -0.02 2.74 16 17 N -0.60 -15.21 3.40 -170.04 -0.58 -15.79 16 18 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.53 10.31 55.49 0.57 -25.96 16 22 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.15 3.59 5.15 -3.06 -0.02 3.57 16 27 C 0.07 1.25 3.97 -24.90 -0.10 1.15 16 28 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 29 O -0.56 -9.33 13.39 -35.23 -0.47 -9.80 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.41 0.97 9.06 45.56 0.41 1.38 16 34 H 0.41 1.12 9.06 45.56 0.41 1.53 16 35 H 0.41 5.52 7.91 -40.82 -0.32 5.19 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.06 1.62 7.30 -51.93 -0.38 1.24 16 40 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 41 H 0.38 4.69 9.12 45.56 0.42 5.11 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -36.58 357.37 -5.56 -42.15 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -2.29 Total: 8.11 kcal Atomic # 6 Polarization: 24.68 SS G_CDS: -1.32 Total: 23.36 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.54 Total: -64.56 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.77 Total: -31.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.58 -5.56 -42.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077999510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.504 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds