Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35788 * 117.00076 * 2 1 4 4 C 1.40344 * 120.90717 * 89.99593 * 3 2 1 5 5 O 1.35556 * 120.48534 * 0.02562 * 4 3 2 6 6 N 1.32403 * 119.02450 * 179.97438 * 4 3 2 7 7 C 1.32486 * 120.97994 * 359.97438 * 6 4 3 8 8 O 1.35546 * 118.99533 * 180.02562 * 7 6 4 9 9 N 1.31864 * 122.01072 * 359.97438 * 7 6 4 10 10 C 1.33525 * 120.87255 * 0.02562 * 9 7 6 11 11 C 1.48060 * 120.53984 * 179.97438 * 10 9 7 12 12 O 1.21526 * 120.00230 * 179.97438 * 11 10 9 13 13 N 1.34774 * 119.99735 * 0.02562 * 11 10 9 14 14 C 1.46500 * 120.00138 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.88346 * 34.30104 * 14 13 11 16 16 C 1.54907 * 111.00826 * 270.42125 * 14 13 11 17 17 N 1.47467 * 104.81371 * 204.94807 * 16 14 13 18 18 C 1.36940 * 125.62673 * 204.14682 * 17 16 14 19 19 H 1.07999 * 120.00146 * 359.93350 * 18 17 16 20 20 C 1.38812 * 119.99696 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47540 * 89.99588 * 22 20 18 24 24 H 1.48502 * 109.46973 * 209.99928 * 22 20 18 25 25 H 1.48503 * 109.46982 * 329.99594 * 22 20 18 26 26 C 1.47019 * 108.72357 * 24.06441 * 17 16 14 27 27 C 1.54326 * 107.26904 * 358.98314 * 26 17 16 28 28 H 1.08999 * 110.72567 * 96.16903 * 27 26 17 29 29 O 1.42904 * 110.71605 * 219.43986 * 27 26 17 30 30 H 1.08997 * 109.47512 * 300.00649 * 1 2 3 31 31 H 1.09002 * 109.46856 * 60.00200 * 1 2 3 32 32 H 1.08992 * 109.47565 * 179.97438 * 1 2 3 33 33 H 0.96704 * 114.00334 * 269.97509 * 5 4 3 34 34 H 0.96695 * 113.99884 * 269.97709 * 8 7 6 35 35 H 0.97003 * 120.00554 * 0.02562 * 13 11 10 36 36 H 1.09000 * 110.36899 * 323.75531 * 16 14 13 37 37 H 1.09005 * 110.36864 * 86.07192 * 16 14 13 38 38 H 0.97000 * 119.99920 * 180.02562 * 21 20 18 39 39 H 1.08994 * 109.88796 * 239.56227 * 26 17 16 40 40 H 1.09003 * 110.00474 * 118.46138 * 26 17 16 41 41 H 0.96703 * 113.99898 * 293.51971 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3727 1.8522 1.2042 5 8 2.0784 1.2737 2.3942 6 7 2.9739 3.0311 1.1607 7 6 3.2674 3.6046 0.0030 8 8 3.8837 4.8118 0.0054 9 7 2.9792 3.0364 -1.1515 10 6 2.3729 1.8476 -1.1977 11 6 2.0522 1.2166 -2.4981 12 8 1.5007 0.1341 -2.5287 13 7 2.3728 1.8423 -3.6479 14 6 2.0560 1.2178 -4.9347 15 1 1.1246 0.6548 -4.8746 16 6 3.2199 0.3157 -5.4157 17 7 3.0750 0.2633 -6.8823 18 6 3.5448 -0.7336 -7.6952 19 1 4.0740 -1.5732 -7.2693 20 6 3.3415 -0.6644 -9.0666 21 7 2.6968 0.3590 -9.5856 22 14 3.9829 -2.0239 -10.1756 23 1 2.9429 -3.0733 -10.3248 24 1 4.3126 -1.4604 -11.5094 25 1 5.2035 -2.6187 -9.5741 26 6 2.3411 1.4571 -7.3270 27 6 1.9935 2.2771 -6.0667 28 1 2.7314 3.0621 -5.9015 29 8 0.6797 2.8299 -6.1697 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2059 1.5069 2.7399 34 1 3.2758 5.5638 0.0053 35 1 2.8140 2.7059 -3.6236 36 1 4.1790 0.7574 -5.1452 37 1 3.1273 -0.6829 -4.9887 38 1 2.5544 0.4071 -10.5439 39 1 1.4265 1.1604 -7.8402 40 1 2.9650 2.0510 -7.9951 41 1 0.5872 3.4976 -6.8631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077999510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -131.707975 kcal Electronic energy + Delta-G solvation = -30034.988504 eV Core-core repulsion = 25531.108426 eV Total energy + Delta-G solvation = -4503.880078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.90635 -41.04608 -40.00851 -39.45751 -38.65328 -37.82915 -36.68069 -35.71964 -34.70693 -33.55716 -31.54282 -30.30417 -28.98247 -28.03884 -26.96707 -26.02002 -24.87798 -22.93469 -22.25547 -21.84545 -20.77208 -20.24239 -19.41823 -19.13566 -18.86328 -18.40592 -18.21774 -17.64396 -17.33944 -16.61450 -16.45716 -16.13891 -15.90427 -15.78479 -15.62830 -15.26030 -14.83090 -14.48613 -14.41435 -14.16220 -13.95126 -13.78533 -13.41521 -13.21727 -13.16543 -12.93413 -12.77421 -12.73584 -12.35539 -12.09946 -12.03262 -11.89825 -11.83075 -11.60956 -11.56259 -10.96768 -10.77191 -10.46607 -10.33280 -10.25183 -8.97737 -7.88945 -5.26165 -1.04725 -0.69233 1.24004 1.46275 1.46913 1.48422 1.56932 1.75583 2.09936 2.17017 2.39990 2.46909 2.90611 3.10017 3.31980 3.36835 3.51069 3.62505 3.81803 3.97063 4.03388 4.17171 4.27650 4.41678 4.42699 4.52298 4.57720 4.77908 4.80415 4.89997 5.09436 5.29911 5.37647 5.44261 5.66438 5.99879 6.12921 6.21676 6.34457 6.44368 6.51107 6.86049 6.90132 7.04871 7.68464 8.30650 9.20725 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002746 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.812898 B =10193.750893 C =10763.993996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.026 3.974 4 C 0.387 3.613 5 O -0.458 6.458 6 N -0.526 5.526 7 C 0.517 3.483 8 O -0.450 6.450 9 N -0.496 5.496 10 C 0.137 3.863 11 C 0.567 3.433 12 O -0.529 6.529 13 N -0.678 5.678 14 C 0.153 3.847 15 H 0.084 0.916 16 C 0.130 3.870 17 N -0.621 5.621 18 C -0.249 4.249 19 H 0.081 0.919 20 C -0.059 4.059 21 N -0.947 5.947 22 Si 0.980 3.020 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.270 1.270 26 C 0.162 3.838 27 C 0.093 3.907 28 H 0.093 0.907 29 O -0.566 6.566 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.112 0.888 33 H 0.435 0.565 34 H 0.439 0.561 35 H 0.420 0.580 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.250 0.750 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 11.028 23.092 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.229 6.229 3 C -0.026 4.026 4 C 0.194 3.806 5 O -0.270 6.270 6 N -0.264 5.264 7 C 0.212 3.788 8 O -0.257 6.257 9 N -0.228 5.228 10 C -0.009 4.009 11 C 0.350 3.650 12 O -0.404 6.404 13 N -0.330 5.330 14 C 0.047 3.953 15 H 0.103 0.897 16 C 0.003 3.997 17 N -0.349 5.349 18 C -0.377 4.377 19 H 0.099 0.901 20 C -0.253 4.253 21 N -0.595 5.595 22 Si 0.808 3.192 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.195 1.195 26 C 0.036 3.964 27 C 0.032 3.968 28 H 0.110 0.890 29 O -0.374 6.374 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.300 0.700 34 H 0.303 0.697 35 H 0.259 0.741 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.643 9.966 23.295 25.759 hybrid contribution -0.587 -0.106 -1.327 1.455 sum -5.230 9.860 21.968 24.640 Atomic orbital electron populations 1.23233 0.75839 1.05416 1.01182 1.86111 1.22310 1.20937 1.93579 1.20563 1.00728 0.89641 0.91691 1.19480 0.89900 0.85250 0.85939 1.84785 1.43007 1.67434 1.31733 1.67451 1.14856 1.12010 1.32126 1.19746 0.88144 0.89268 0.81606 1.84794 1.34324 1.11878 1.94725 1.67941 1.13535 1.10225 1.31100 1.21693 0.95087 0.90068 0.94032 1.17736 0.79486 0.84608 0.83147 1.90861 1.42244 1.20556 1.86769 1.45552 1.59731 1.23790 1.03884 1.21879 0.98377 0.93858 0.81147 0.89741 1.21937 0.95723 0.97700 0.84339 1.44505 1.66009 1.23030 1.01317 1.19438 1.29776 0.99834 0.88694 0.90133 1.25631 1.01111 1.00634 0.97911 1.70117 1.46785 1.31537 1.11080 0.85059 0.78060 0.78181 0.77889 1.21364 1.21615 1.19509 1.21633 0.95240 0.87018 0.92522 1.23110 0.85256 0.94471 0.93930 0.88983 1.86415 1.29657 1.61013 1.60338 0.90359 0.94355 0.86986 0.70026 0.69671 0.74126 0.94410 0.94298 0.94095 0.95718 0.95497 0.75224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.55 113.37 1.20 1.81 16 2 O -0.32 -7.74 8.78 -64.67 -0.57 -8.30 16 3 C 0.03 0.61 5.81 23.11 0.13 0.74 16 4 C 0.39 7.33 7.86 85.12 0.67 8.00 16 5 O -0.46 -6.21 13.42 -76.76 -1.03 -7.24 16 6 N -0.53 -10.37 10.46 -425.94 -4.46 -14.82 16 7 C 0.52 10.10 8.69 180.65 1.57 11.67 16 8 O -0.45 -6.42 13.64 -88.51 -1.21 -7.63 16 9 N -0.50 -11.14 9.72 -302.82 -2.94 -14.08 16 10 C 0.14 3.51 6.79 41.82 0.28 3.79 16 11 C 0.57 17.60 7.81 86.85 0.68 18.28 16 12 O -0.53 -19.50 13.91 16.66 0.23 -19.27 16 13 N -0.68 -20.25 5.21 -438.63 -2.28 -22.54 16 14 C 0.15 5.66 3.09 46.38 0.14 5.80 16 15 H 0.08 3.55 7.63 -2.39 -0.02 3.54 16 16 C 0.13 5.60 6.93 86.85 0.60 6.20 16 17 N -0.62 -32.27 3.40 -691.88 -2.35 -34.62 16 18 C -0.25 -14.15 10.28 84.03 0.86 -13.29 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 21 N -0.95 -55.75 10.31 21.65 0.22 -55.53 16 22 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.16 7.71 5.15 86.73 0.45 8.16 16 27 C 0.09 3.27 3.97 31.78 0.13 3.39 16 28 H 0.09 2.72 8.00 -2.39 -0.02 2.70 16 29 O -0.57 -18.06 13.39 -148.98 -1.99 -20.06 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.77 7.56 -2.39 -0.02 0.76 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.43 0.54 9.06 -74.05 -0.67 -0.13 16 34 H 0.44 1.06 9.06 -74.06 -0.67 0.39 16 35 H 0.42 10.61 7.91 -92.71 -0.73 9.87 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.02 1.34 7.30 -2.39 -0.02 1.33 16 40 H 0.03 1.39 7.50 -2.39 -0.02 1.37 16 41 H 0.40 9.24 9.12 -74.06 -0.68 8.56 16 Total: -1.00 -80.61 357.37 -8.76 -89.37 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -1.59 Total: 15.20 kcal Atomic # 6 Polarization: 44.46 SS G_CDS: 7.18 Total: 51.64 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -11.81 Total: -141.59 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -4.57 Total: -62.49 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -80.61 -8.76 -89.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077999510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.341 kcal (2) G-P(sol) polarization free energy of solvation -80.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds