Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87225 * 2 1 4 4 C 1.54322 * 109.88105 * 121.01320 * 2 1 3 5 5 H 1.09002 * 110.71963 * 215.74443 * 4 2 1 6 6 N 1.46502 * 110.72235 * 338.84176 * 4 2 1 7 7 C 1.39153 * 120.00311 * 202.56070 * 6 4 2 8 8 C 1.39206 * 120.05702 * 359.72312 * 7 6 4 9 9 N 1.32008 * 119.93117 * 179.71099 * 8 7 6 10 10 C 1.32404 * 120.05384 * 0.56560 * 9 8 7 11 11 F 1.35100 * 119.94151 * 179.72819 * 10 9 8 12 12 C 1.38474 * 120.12120 * 359.70974 * 10 9 8 13 13 N 1.32212 * 120.06798 * 0.02562 * 12 10 9 14 14 C 1.55157 * 102.94206 * 97.37924 * 4 2 1 15 15 C 1.54909 * 101.57958 * 35.50243 * 14 4 2 16 16 N 1.47018 * 110.01204 * 238.90120 * 2 1 3 17 17 C 1.34778 * 125.65052 * 59.49099 * 16 2 1 18 18 O 1.21277 * 119.99723 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00165 * 180.02562 * 17 16 2 20 20 S 1.80998 * 109.46951 * 179.97438 * 19 17 16 21 21 C 1.76207 * 99.99710 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99820 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00024 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00051 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00225 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47105 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47151 * 119.99805 * 25 23 21 28 28 H 1.48495 * 109.47196 * 239.99876 * 25 23 21 29 29 H 1.09000 * 109.47464 * 298.98577 * 1 2 3 30 30 H 1.09002 * 109.46906 * 58.98749 * 1 2 3 31 31 H 1.09004 * 109.47238 * 178.98200 * 1 2 3 32 32 H 0.97000 * 119.99643 * 22.55598 * 6 4 2 33 33 H 1.08001 * 120.04030 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.96113 * 179.97438 * 12 10 9 35 35 H 1.09000 * 111.00495 * 153.57626 * 14 4 2 36 36 H 1.08997 * 111.00429 * 277.43204 * 14 4 2 37 37 H 1.08998 * 110.36917 * 204.14700 * 15 14 4 38 38 H 1.09009 * 110.46209 * 81.87337 * 15 14 4 39 39 H 1.09003 * 109.46748 * 299.99694 * 19 17 16 40 40 H 1.08998 * 109.47064 * 59.99584 * 19 17 16 41 41 H 0.97001 * 120.00185 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 1 2.9641 -0.2792 1.6203 6 7 1.0294 -0.7989 2.2889 7 6 1.3986 -0.9863 3.6174 8 6 2.7415 -1.1309 3.9541 9 7 3.0894 -1.3028 5.2158 10 6 2.1615 -1.3488 6.1592 11 9 2.5197 -1.5303 7.4491 12 6 0.8245 -1.2109 5.8261 13 7 0.4711 -1.0333 4.5645 14 6 2.3556 -2.1673 0.6946 15 6 2.8618 -1.8472 -0.7340 16 7 2.0331 -0.7135 -1.1829 17 6 1.7795 -0.3851 -2.4652 18 8 1.0810 0.5733 -2.7189 19 6 2.3630 -1.2094 -3.5837 20 16 1.8437 -0.5207 -5.1750 21 6 2.6453 -1.6440 -6.2707 22 1 3.2387 -2.4545 -5.8740 23 6 2.5139 -1.4873 -7.6435 24 7 1.7902 -0.4998 -8.1269 25 14 3.3642 -2.6777 -8.8051 26 1 4.1100 -3.6913 -8.0165 27 1 2.3482 -3.3570 -9.6487 28 1 4.3098 -1.9316 -9.6735 29 1 -0.3634 0.4980 0.8989 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0183 32 1 0.0931 -0.7022 2.0547 33 1 3.4985 -1.0983 3.1844 34 1 0.0697 -1.2492 6.5976 35 1 3.1311 -2.6577 1.2831 36 1 1.4503 -2.7734 0.6616 37 1 2.7166 -2.7061 -1.3893 38 1 3.9137 -1.5624 -0.7107 39 1 3.4510 -1.1928 -3.5179 40 1 2.0096 -2.2371 -3.5002 41 1 1.6987 -0.3900 -9.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090202001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = -5.025730 kcal Electronic energy + Delta-G solvation = -26129.197102 eV Core-core repulsion = 22085.936040 eV Total energy + Delta-G solvation = -4043.261063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.30641 -41.58086 -40.35856 -38.02763 -35.71612 -34.57109 -32.47986 -32.11092 -31.31300 -29.72290 -28.32113 -26.44248 -25.54422 -25.30311 -23.88401 -23.17890 -21.00731 -19.29354 -19.03738 -18.46834 -17.85816 -17.79384 -16.77176 -16.65255 -16.37936 -15.81612 -15.37219 -15.15209 -14.85206 -14.81266 -14.45865 -14.24459 -14.09677 -13.94283 -13.60647 -13.33071 -12.92487 -12.74656 -12.62091 -12.47647 -12.15684 -12.12497 -11.87426 -11.81018 -11.45008 -11.22045 -11.11067 -11.06547 -10.80432 -10.60550 -9.86178 -9.74965 -9.48634 -9.12289 -8.71424 -8.35156 -8.29577 -6.56356 -6.26867 -3.98003 0.28147 0.60895 2.21536 2.80884 2.94014 3.05500 3.10817 3.17995 3.21735 3.27335 3.51250 3.73133 3.84207 3.93478 4.10587 4.15464 4.27428 4.45184 4.62401 4.70451 4.85702 4.88483 4.92151 5.07905 5.08624 5.17340 5.22203 5.38487 5.42636 5.54179 5.62649 5.73003 5.78417 5.82669 6.03810 6.07992 6.10179 6.32905 6.78064 6.79441 7.27674 7.49304 7.55100 8.30243 8.42722 9.18736 10.80572 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.034540 B = 0.001910 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.462094 B =14658.417009 C =15212.589793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.136 3.864 3 H 0.086 0.914 4 C 0.139 3.861 5 H 0.104 0.896 6 N -0.698 5.698 7 C 0.353 3.647 8 C 0.028 3.972 9 N -0.429 5.429 10 C 0.181 3.819 11 F -0.110 7.110 12 C 0.100 3.900 13 N -0.480 5.480 14 C -0.149 4.149 15 C 0.101 3.899 16 N -0.622 5.622 17 C 0.552 3.448 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.415 0.585 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 -3.344 26.629 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.031 3.969 3 H 0.104 0.896 4 C 0.033 3.967 5 H 0.122 0.878 6 N -0.333 5.333 7 C 0.113 3.887 8 C -0.141 4.141 9 N -0.147 5.147 10 C 0.024 3.976 11 F -0.089 7.089 12 C -0.063 4.063 13 N -0.201 5.201 14 C -0.188 4.188 15 C -0.023 4.023 16 N -0.361 5.361 17 C 0.341 3.659 18 O -0.383 6.383 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.257 0.743 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.346 -1.786 25.920 25.983 hybrid contribution 1.150 -1.944 -0.242 2.272 sum 0.804 -3.730 25.678 25.960 Atomic orbital electron populations 1.22171 0.94581 1.02842 1.03614 1.21473 0.95305 0.96320 0.83761 0.89637 1.22124 0.91088 0.96722 0.86808 0.87796 1.44818 1.10621 1.76865 1.01026 1.19383 0.90562 0.91777 0.86940 1.22979 0.94346 1.04269 0.92518 1.67581 1.37430 1.08928 1.00798 1.18788 0.90653 1.07350 0.80784 1.91626 1.92899 1.92884 1.31517 1.23297 0.94114 0.95229 0.93680 1.68024 1.35457 1.16875 0.99793 1.23342 1.03036 0.96601 0.95847 1.22293 0.95231 0.90085 0.94685 1.48534 1.52108 1.30882 1.04569 1.20045 0.80010 0.84725 0.81153 1.90705 1.37120 1.28096 1.82396 1.23518 1.03828 1.02510 0.99930 1.85416 1.66979 1.40420 0.90521 1.22890 1.36372 1.16008 0.93072 0.90848 1.24998 0.95236 0.95984 0.97376 1.70024 1.37292 1.29323 1.13577 0.86113 0.79088 0.80177 0.80094 1.19597 1.20553 1.20532 0.91602 0.89533 0.92022 0.74333 0.80712 0.80181 0.89207 0.89599 0.89679 0.90710 0.89185 0.89257 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 7.95 37.16 0.30 -1.42 16 2 C 0.14 1.30 3.47 -66.95 -0.23 1.07 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.14 0.87 2.81 -66.10 -0.19 0.68 16 5 H 0.10 0.49 6.52 -51.93 -0.34 0.15 16 6 N -0.70 -4.60 5.12 -52.03 -0.27 -4.87 16 7 C 0.35 2.73 7.67 -154.63 -1.19 1.54 16 8 C 0.03 0.21 10.40 -17.12 -0.18 0.04 16 9 N -0.43 -4.11 10.50 -13.24 -0.14 -4.25 16 10 C 0.18 1.60 8.43 -17.22 -0.15 1.46 16 11 F -0.11 -1.00 17.29 2.25 0.04 -0.96 16 12 C 0.10 0.72 11.20 -17.30 -0.19 0.53 16 13 N -0.48 -4.05 10.53 -12.17 -0.13 -4.18 16 14 C -0.15 -0.88 6.77 -24.58 -0.17 -1.05 16 15 C 0.10 0.83 6.69 -2.53 -0.02 0.81 16 16 N -0.62 -7.49 3.08 -163.01 -0.50 -7.99 16 17 C 0.55 9.61 7.65 -10.98 -0.08 9.52 16 18 O -0.51 -10.80 14.77 5.56 0.08 -10.71 16 19 C -0.15 -2.82 5.16 36.01 0.19 -2.63 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 25 Si 0.92 20.97 29.55 -169.99 -5.02 15.94 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.07 0.51 6.72 -51.93 -0.35 0.16 16 30 H 0.09 1.16 6.77 -51.93 -0.35 0.81 16 31 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 32 H 0.42 2.81 5.92 -40.82 -0.24 2.57 16 33 H 0.18 0.88 6.25 -52.49 -0.33 0.55 16 34 H 0.18 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 38 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.09 1.58 7.85 -51.92 -0.41 1.17 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -34.55 359.60 -8.61 -43.16 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.90 Total: -0.79 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.71 Total: -2.03 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.30 Total: -46.23 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.55 -8.61 -43.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090202001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.130 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds