Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87225 * 2 1 4 4 C 1.54322 * 109.88105 * 121.01320 * 2 1 3 5 5 H 1.09002 * 110.71963 * 215.74443 * 4 2 1 6 6 N 1.46502 * 110.72235 * 338.84176 * 4 2 1 7 7 C 1.39153 * 120.00311 * 202.56070 * 6 4 2 8 8 C 1.39206 * 120.05702 * 359.72312 * 7 6 4 9 9 N 1.32008 * 119.93117 * 179.71099 * 8 7 6 10 10 C 1.32404 * 120.05384 * 0.56560 * 9 8 7 11 11 F 1.35100 * 119.94151 * 179.72819 * 10 9 8 12 12 C 1.38474 * 120.12120 * 359.70974 * 10 9 8 13 13 N 1.32212 * 120.06798 * 0.02562 * 12 10 9 14 14 C 1.55157 * 102.94206 * 97.37924 * 4 2 1 15 15 C 1.54909 * 101.57958 * 35.50243 * 14 4 2 16 16 N 1.47018 * 110.01204 * 238.90120 * 2 1 3 17 17 C 1.34778 * 125.65052 * 59.49099 * 16 2 1 18 18 O 1.21277 * 119.99723 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00165 * 180.02562 * 17 16 2 20 20 S 1.80998 * 109.46951 * 179.97438 * 19 17 16 21 21 C 1.76207 * 99.99710 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99820 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00024 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00051 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00225 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47105 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47151 * 119.99805 * 25 23 21 28 28 H 1.48495 * 109.47196 * 239.99876 * 25 23 21 29 29 H 1.09000 * 109.47464 * 298.98577 * 1 2 3 30 30 H 1.09002 * 109.46906 * 58.98749 * 1 2 3 31 31 H 1.09004 * 109.47238 * 178.98200 * 1 2 3 32 32 H 0.97000 * 119.99643 * 22.55598 * 6 4 2 33 33 H 1.08001 * 120.04030 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.96113 * 179.97438 * 12 10 9 35 35 H 1.09000 * 111.00495 * 153.57626 * 14 4 2 36 36 H 1.08997 * 111.00429 * 277.43204 * 14 4 2 37 37 H 1.08998 * 110.36917 * 204.14700 * 15 14 4 38 38 H 1.09009 * 110.46209 * 81.87337 * 15 14 4 39 39 H 1.09003 * 109.46748 * 299.99694 * 19 17 16 40 40 H 1.08998 * 109.47064 * 59.99584 * 19 17 16 41 41 H 0.97001 * 120.00185 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 1 2.9641 -0.2792 1.6203 6 7 1.0294 -0.7989 2.2889 7 6 1.3986 -0.9863 3.6174 8 6 2.7415 -1.1309 3.9541 9 7 3.0894 -1.3028 5.2158 10 6 2.1615 -1.3488 6.1592 11 9 2.5197 -1.5303 7.4491 12 6 0.8245 -1.2109 5.8261 13 7 0.4711 -1.0333 4.5645 14 6 2.3556 -2.1673 0.6946 15 6 2.8618 -1.8472 -0.7340 16 7 2.0331 -0.7135 -1.1829 17 6 1.7795 -0.3851 -2.4652 18 8 1.0810 0.5733 -2.7189 19 6 2.3630 -1.2094 -3.5837 20 16 1.8437 -0.5207 -5.1750 21 6 2.6453 -1.6440 -6.2707 22 1 3.2387 -2.4545 -5.8740 23 6 2.5139 -1.4873 -7.6435 24 7 1.7902 -0.4998 -8.1269 25 14 3.3642 -2.6777 -8.8051 26 1 4.1100 -3.6913 -8.0165 27 1 2.3482 -3.3570 -9.6487 28 1 4.3098 -1.9316 -9.6735 29 1 -0.3634 0.4980 0.8989 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0183 32 1 0.0931 -0.7022 2.0547 33 1 3.4985 -1.0983 3.1844 34 1 0.0697 -1.2492 6.5976 35 1 3.1311 -2.6577 1.2831 36 1 1.4503 -2.7734 0.6616 37 1 2.7166 -2.7061 -1.3893 38 1 3.9137 -1.5624 -0.7107 39 1 3.4510 -1.1928 -3.5179 40 1 2.0096 -2.2371 -3.5002 41 1 1.6987 -0.3900 -9.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090202001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -29.272678 kcal Electronic energy + Delta-G solvation = -26130.248529 eV Core-core repulsion = 22085.936040 eV Total energy + Delta-G solvation = -4044.312489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.93483 -42.17549 -41.28946 -39.11127 -36.47988 -35.20187 -34.58591 -32.99663 -32.10398 -30.70184 -29.34158 -27.65560 -27.09760 -25.91645 -24.54374 -24.00339 -21.74221 -20.43625 -19.67988 -19.54483 -19.05191 -18.43376 -18.04671 -17.27068 -17.14678 -16.88956 -16.78771 -16.29725 -15.99161 -15.82712 -15.38361 -15.31018 -14.92698 -14.62418 -14.60742 -14.44322 -14.10418 -13.83252 -13.66197 -13.23592 -13.16275 -13.11185 -12.92815 -12.84649 -12.75335 -12.58983 -12.46295 -12.11380 -11.86314 -11.70535 -11.17213 -11.15794 -10.87913 -10.32249 -10.26654 -9.73889 -8.90286 -8.66971 -8.35053 -6.12919 -0.25656 0.01390 1.21753 1.41378 1.42716 1.54947 1.58232 1.72402 2.15066 2.27287 2.49506 2.54372 2.99447 3.13933 3.20895 3.32797 3.41108 3.51187 3.70180 3.84275 3.90852 4.09090 4.12313 4.23940 4.27870 4.28317 4.45334 4.45933 4.50247 4.56777 4.75758 4.90576 4.96499 5.10235 5.19543 5.25082 5.41685 5.42269 5.57172 6.19853 6.21520 6.23508 6.37110 6.71817 7.06674 7.13755 8.74284 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.034540 B = 0.001910 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.462094 B =14658.417009 C =15212.589793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.130 3.870 3 H 0.080 0.920 4 C 0.152 3.848 5 H 0.131 0.869 6 N -0.693 5.693 7 C 0.353 3.647 8 C 0.031 3.969 9 N -0.454 5.454 10 C 0.162 3.838 11 F -0.117 7.117 12 C 0.107 3.893 13 N -0.498 5.498 14 C -0.137 4.137 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.550 3.450 18 O -0.560 6.560 19 C -0.121 4.121 20 S -0.152 6.152 21 C -0.544 4.544 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.414 0.586 33 H 0.202 0.798 34 H 0.208 0.792 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -5.324 28.344 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.026 3.974 3 H 0.098 0.902 4 C 0.046 3.954 5 H 0.148 0.852 6 N -0.327 5.327 7 C 0.113 3.887 8 C -0.138 4.138 9 N -0.172 5.172 10 C 0.006 3.994 11 F -0.097 7.097 12 C -0.055 4.055 13 N -0.220 5.220 14 C -0.176 4.176 15 C -0.033 4.033 16 N -0.347 5.347 17 C 0.338 3.662 18 O -0.438 6.438 19 C -0.272 4.272 20 S 0.076 5.924 21 C -0.692 4.692 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.200 1.200 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.256 0.744 33 H 0.218 0.782 34 H 0.225 0.775 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.282 -3.799 27.705 27.994 hybrid contribution 0.631 -1.320 -0.637 1.596 sum 1.914 -5.119 27.068 27.614 Atomic orbital electron populations 1.22086 0.95022 1.02723 1.02810 1.21652 0.95045 0.96482 0.84229 0.90225 1.22096 0.91474 0.96678 0.85156 0.85179 1.44767 1.10641 1.76563 1.00763 1.19479 0.90757 0.91497 0.86993 1.23352 0.94756 1.03345 0.92375 1.67563 1.38246 1.09726 1.01680 1.18988 0.91327 1.08507 0.80576 1.91601 1.93015 1.93065 1.31980 1.23650 0.94093 0.93882 0.93881 1.68061 1.35979 1.17652 1.00322 1.23332 1.03758 0.96193 0.94345 1.22685 0.95877 0.88641 0.96063 1.48395 1.51298 1.31638 1.03412 1.19696 0.79817 0.84052 0.82632 1.90691 1.39448 1.30124 1.83501 1.23317 1.04783 1.02888 0.96200 1.85597 1.68335 1.42567 0.95948 1.23226 1.36235 1.16055 0.93636 0.89835 1.26122 0.95853 0.97854 0.99369 1.70189 1.39048 1.31513 1.14048 0.84916 0.77899 0.77751 0.77457 1.17876 1.20066 1.20001 0.89353 0.93522 0.91633 0.74420 0.78150 0.77545 0.86124 0.90083 0.89628 0.88427 0.87365 0.87605 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 7.95 71.98 0.57 -2.66 16 2 C 0.13 2.26 3.47 45.34 0.16 2.42 16 3 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 4 C 0.15 1.35 2.81 46.18 0.13 1.48 16 5 H 0.13 0.59 6.52 -2.39 -0.02 0.57 16 6 N -0.69 -7.03 5.12 -318.54 -1.63 -8.66 16 7 C 0.35 4.44 7.67 132.95 1.02 5.46 16 8 C 0.03 0.37 10.40 84.90 0.88 1.26 16 9 N -0.45 -7.76 10.50 -195.81 -2.06 -9.81 16 10 C 0.16 2.63 8.43 84.66 0.71 3.34 16 11 F -0.12 -2.03 17.29 44.97 0.78 -1.25 16 12 C 0.11 1.34 11.20 84.69 0.95 2.29 16 13 N -0.50 -7.29 10.53 -192.40 -2.03 -9.31 16 14 C -0.14 -1.05 6.77 31.99 0.22 -0.84 16 15 C 0.09 1.17 6.69 86.85 0.58 1.75 16 16 N -0.61 -13.76 3.08 -788.05 -2.43 -16.19 16 17 C 0.55 19.18 7.65 87.66 0.67 19.86 16 18 O -0.56 -24.74 14.77 -3.02 -0.04 -24.78 16 19 C -0.12 -4.57 5.16 71.24 0.37 -4.20 16 20 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 21 C -0.54 -30.36 9.50 67.95 0.65 -29.71 16 22 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 23 C 0.01 0.71 5.49 84.86 0.47 1.18 16 24 N -0.91 -55.32 13.22 21.65 0.29 -55.03 16 25 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 29 H 0.09 1.25 6.72 -2.39 -0.02 1.24 16 30 H 0.05 1.30 6.77 -2.39 -0.02 1.29 16 31 H 0.06 1.18 8.06 -2.39 -0.02 1.16 16 32 H 0.41 4.57 5.92 -92.71 -0.55 4.02 16 33 H 0.20 1.09 6.25 -2.91 -0.02 1.07 16 34 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 1.17 7.48 -2.39 -0.02 1.15 16 38 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.11 3.67 8.14 -2.39 -0.02 3.66 16 40 H 0.11 3.63 7.85 -2.40 -0.02 3.61 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -79.45 359.60 1.65 -77.80 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.54 Total: 10.19 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 7.37 Total: 1.61 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -7.86 Total: -99.00 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.04 Total: -24.78 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -79.45 1.65 -77.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090202001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.525 kcal (2) G-P(sol) polarization free energy of solvation -79.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds