Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.35610 * 2 1 4 4 C 1.54001 * 110.30953 * 237.86405 * 2 1 3 5 5 N 1.47901 * 107.05405 * 242.31026 * 4 2 1 6 6 C 1.38575 * 110.99656 * 214.15237 * 5 4 2 7 7 C 1.39464 * 120.51719 * 176.99162 * 6 5 4 8 8 C 1.38472 * 118.31298 * 179.75714 * 7 6 5 9 9 F 1.35097 * 120.43037 * 180.26160 * 8 7 6 10 10 N 1.32785 * 119.13852 * 0.51845 * 8 7 6 11 11 C 1.31764 * 120.96204 * 359.74084 * 10 8 7 12 12 N 1.31760 * 121.85810 * 359.97438 * 11 10 8 13 13 C 1.48531 * 105.82177 * 334.66413 * 5 4 2 14 14 C 1.54594 * 110.31160 * 122.14496 * 2 1 3 15 15 H 1.08996 * 110.87451 * 22.44769 * 14 2 1 16 16 N 1.46493 * 110.72357 * 259.22819 * 14 2 1 17 17 C 1.34784 * 119.99864 * 160.04279 * 16 14 2 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 14 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 14 20 20 S 1.81005 * 109.47244 * 179.97438 * 19 17 16 21 21 C 1.76192 * 100.00090 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00308 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99747 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00171 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99848 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47031 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47042 * 119.99895 * 25 23 21 28 28 H 1.48504 * 109.46790 * 239.99932 * 25 23 21 29 29 H 1.09003 * 109.46573 * 297.85532 * 1 2 3 30 30 H 1.08994 * 109.46967 * 57.85473 * 1 2 3 31 31 H 1.09001 * 109.46904 * 177.85677 * 1 2 3 32 32 H 1.08997 * 109.91870 * 122.95140 * 4 2 1 33 33 H 1.09003 * 110.07466 * 1.74941 * 4 2 1 34 34 H 1.08008 * 120.83924 * 0.02562 * 7 6 5 35 35 H 1.07996 * 119.07152 * 179.97438 * 11 10 8 36 36 H 1.08994 * 110.66726 * 280.77169 * 13 5 4 37 37 H 1.08999 * 110.66204 * 157.64520 * 13 5 4 38 38 H 0.97000 * 120.00740 * 339.76972 * 16 14 2 39 39 H 1.08998 * 109.47224 * 299.99701 * 19 17 16 40 40 H 1.09002 * 109.47054 * 60.00213 * 19 17 16 41 41 H 0.97000 * 119.99868 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 6 2.0645 -0.7682 -1.2230 5 7 2.8313 -1.9235 -0.7083 6 6 3.9103 -2.2090 -1.5297 7 6 4.8055 -3.2248 -1.1955 8 6 5.8648 -3.4746 -2.0516 9 9 6.7545 -4.4521 -1.7723 10 7 5.9976 -2.7376 -3.1481 11 6 5.1359 -1.7817 -3.4308 12 7 4.1113 -1.5147 -2.6467 13 6 3.2855 -1.5348 0.6513 14 6 2.0666 -0.7714 1.2276 15 1 1.3187 -1.4683 1.6057 16 7 2.4867 0.1569 2.2801 17 6 2.6011 -0.2737 3.5522 18 8 2.3514 -1.4285 3.8262 19 6 3.0392 0.6797 4.6338 20 16 3.0946 -0.1912 6.2196 21 6 3.6210 1.1209 7.2711 22 1 3.8021 2.1030 6.8599 23 6 3.8029 0.8924 8.6280 24 7 3.5817 -0.3044 9.1294 25 14 4.3602 2.2838 9.7430 26 1 4.5378 3.5204 8.9404 27 1 3.3362 2.5172 10.7928 28 1 5.6503 1.9194 10.3820 29 1 -0.3632 0.4802 0.9086 30 1 -0.3633 0.5468 -0.8701 31 1 -0.3633 -1.0270 -0.0384 32 1 2.7162 -0.1224 -1.8115 33 1 1.2347 -1.1174 -1.8375 34 1 4.6734 -3.8048 -0.2939 35 1 5.2734 -1.2005 -4.3307 36 1 4.1564 -0.8819 0.5939 37 1 3.5047 -2.4183 1.2509 38 1 2.6864 1.0805 2.0610 39 1 4.0300 1.0674 4.3971 40 1 2.3314 1.5062 4.6982 41 1 3.7091 -0.4641 10.0776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090677428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -11.135529 kcal Electronic energy + Delta-G solvation = -26186.225382 eV Core-core repulsion = 22142.699378 eV Total energy + Delta-G solvation = -4043.526003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.56930 -41.75781 -40.07713 -38.60337 -35.40323 -33.41628 -33.08870 -32.47288 -31.39013 -30.05514 -28.03084 -26.61916 -25.53612 -24.87416 -23.88264 -22.08528 -20.90986 -20.30337 -18.87488 -18.60751 -17.82549 -16.96778 -16.72971 -16.42706 -16.07372 -15.68810 -15.57169 -15.26764 -14.84959 -14.80913 -14.61475 -14.30882 -14.24435 -13.91701 -13.73123 -13.60226 -13.23028 -12.66214 -12.57658 -12.40047 -12.11833 -11.56557 -11.51273 -11.34211 -11.10656 -11.09427 -11.06738 -11.00593 -10.79392 -10.29804 -9.97789 -9.85577 -9.55003 -9.21414 -9.11550 -9.00394 -8.29498 -6.55564 -6.26317 -3.97311 0.33050 0.42172 2.62917 2.85976 2.92599 3.04516 3.18507 3.18766 3.25651 3.29759 3.56207 3.62013 4.04763 4.10180 4.15878 4.29316 4.50504 4.53128 4.66265 4.80240 4.86821 5.03683 5.06261 5.08353 5.09289 5.27546 5.37512 5.49405 5.49882 5.59640 5.63678 5.64975 5.80251 5.81182 5.84394 5.97539 6.06220 6.39030 6.40049 6.51029 7.46944 7.53037 7.55919 8.30838 8.46146 9.19376 10.81127 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.002290 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.414630 B =12224.500177 C =13405.579630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.087 0.913 4 C 0.043 3.957 5 N -0.454 5.454 6 C 0.380 3.620 7 C -0.261 4.261 8 C 0.372 3.628 9 F -0.097 7.097 10 N -0.572 5.572 11 C 0.358 3.642 12 N -0.562 5.562 13 C 0.032 3.968 14 C 0.151 3.849 15 H 0.110 0.890 16 N -0.731 5.731 17 C 0.534 3.466 18 O -0.511 6.511 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.209 0.791 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 0.620 -25.835 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.105 0.895 4 C -0.084 4.084 5 N -0.170 5.170 6 C 0.140 3.860 7 C -0.288 4.288 8 C 0.213 3.787 9 F -0.076 7.076 10 N -0.295 5.295 11 C 0.069 3.931 12 N -0.283 5.283 13 C -0.094 4.094 14 C 0.044 3.956 15 H 0.128 0.872 16 N -0.386 5.386 17 C 0.320 3.680 18 O -0.385 6.385 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.180 0.820 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.235 0.765 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.139 -1.423 -25.892 26.019 hybrid contribution 1.341 2.419 0.946 2.924 sum -0.799 0.997 -24.946 24.978 Atomic orbital electron populations 1.21831 0.93057 1.02729 1.02374 1.22334 0.97719 0.99600 0.93311 0.89454 1.23065 0.98352 0.90152 0.96806 1.61477 1.15336 1.37157 1.03067 1.20030 0.87037 0.88782 0.90174 1.22125 0.97453 1.04035 1.05144 1.18117 0.85627 0.85168 0.89750 1.91692 1.66226 1.57621 1.92069 1.67871 1.32596 1.09766 1.19233 1.24676 0.83078 0.88896 0.96454 1.68372 1.23621 1.29068 1.07254 1.23882 0.98297 1.01469 0.85764 1.21809 0.95089 0.91686 0.87005 0.87170 1.46025 1.71794 1.13529 1.07226 1.20393 0.76239 0.88960 0.82417 1.90718 1.47469 1.18607 1.81666 1.23536 1.03997 1.02185 1.00753 1.85410 1.88813 1.15661 0.93361 1.22894 1.52904 0.97517 0.95076 0.90871 1.24998 0.94929 0.96474 0.97194 1.70021 1.45808 1.20621 1.13774 0.86114 0.78403 0.81021 0.79942 1.19624 1.20529 1.20547 0.91852 0.92097 0.91809 0.89493 0.88937 0.81958 0.77472 0.91693 0.87717 0.76549 0.89190 0.89098 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.89 37.16 0.33 -0.64 16 2 C -0.11 -0.80 3.32 -89.26 -0.30 -1.10 16 3 H 0.09 0.54 7.72 -51.93 -0.40 0.14 16 4 C 0.04 0.33 5.99 -2.75 -0.02 0.31 16 5 N -0.45 -4.24 5.31 -169.09 -0.90 -5.13 16 6 C 0.38 3.69 6.26 -154.76 -0.97 2.73 16 7 C -0.26 -2.52 9.48 -39.04 -0.37 -2.89 16 8 C 0.37 3.86 8.50 -17.05 -0.14 3.71 16 9 F -0.10 -1.03 17.30 2.25 0.04 -1.00 16 10 N -0.57 -5.79 10.45 -14.98 -0.16 -5.94 16 11 C 0.36 2.86 12.28 -92.21 -1.13 1.72 16 12 N -0.56 -5.06 8.33 -13.84 -0.12 -5.18 16 13 C 0.03 0.33 5.67 -1.90 -0.01 0.31 16 14 C 0.15 1.53 2.89 -66.07 -0.19 1.34 16 15 H 0.11 1.34 7.42 -51.93 -0.39 0.96 16 16 N -0.73 -8.36 5.20 -52.01 -0.27 -8.63 16 17 C 0.53 9.00 7.84 -10.98 -0.09 8.91 16 18 O -0.51 -10.64 15.59 5.56 0.09 -10.56 16 19 C -0.15 -2.90 6.16 36.00 0.22 -2.68 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 25 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.68 6.58 -51.93 -0.34 0.34 16 33 H 0.09 0.68 7.69 -51.93 -0.40 0.28 16 34 H 0.16 1.40 7.97 -52.48 -0.42 0.98 16 35 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.06 0.65 7.99 -51.93 -0.42 0.23 16 37 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 38 H 0.40 3.45 8.34 -40.82 -0.34 3.11 16 39 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 40 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -33.97 365.79 -9.97 -43.94 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.20 Total: 0.63 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.47 Total: -0.91 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.71 Total: -49.88 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.97 -9.97 -43.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090677428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.804 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds