Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.64377 * 2 1 4 4 C 1.54933 * 110.72501 * 236.65337 * 2 1 3 5 5 N 1.48813 * 103.35205 * 204.33230 * 4 2 1 6 6 C 1.38539 * 111.18595 * 159.50265 * 5 4 2 7 7 N 1.32460 * 119.18207 * 122.26712 * 6 5 4 8 8 C 1.32300 * 120.75855 * 179.76132 * 7 6 5 9 9 C 1.38782 * 119.17129 * 0.50789 * 8 7 6 10 10 F 1.35095 * 120.74767 * 179.77240 * 9 8 7 11 11 C 1.38786 * 118.50830 * 359.74430 * 9 8 7 12 12 N 1.32299 * 119.16929 * 0.02562 * 11 9 8 13 13 C 1.47905 * 105.67450 * 38.97719 * 5 4 2 14 14 C 1.53991 * 107.22505 * 334.90354 * 13 5 4 15 15 H 1.09005 * 110.30467 * 120.04331 * 14 13 5 16 16 N 1.46495 * 110.31159 * 242.10919 * 14 13 5 17 17 C 1.34776 * 120.00551 * 273.55342 * 16 14 13 18 18 O 1.21287 * 119.99426 * 359.97438 * 17 16 14 19 19 C 1.50700 * 120.00588 * 179.97438 * 17 16 14 20 20 S 1.80999 * 109.47194 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99575 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00641 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99729 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00108 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46782 * 60.00229 * 25 23 21 27 27 H 1.48496 * 109.47332 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47161 * 300.00499 * 25 23 21 29 29 H 1.09000 * 109.46955 * 296.84812 * 1 2 3 30 30 H 1.08999 * 109.46713 * 56.84817 * 1 2 3 31 31 H 1.08997 * 109.46968 * 176.84445 * 1 2 3 32 32 H 1.08998 * 110.66828 * 322.66407 * 4 2 1 33 33 H 1.09009 * 110.66924 * 85.62564 * 4 2 1 34 34 H 1.08005 * 120.41225 * 180.27795 * 8 7 6 35 35 H 1.07993 * 120.41309 * 180.02562 * 11 9 8 36 36 H 1.09002 * 109.91668 * 215.45268 * 13 5 4 37 37 H 1.09002 * 109.91761 * 94.35443 * 13 5 4 38 38 H 0.97000 * 119.99990 * 93.54672 * 16 14 13 39 39 H 1.08997 * 109.46751 * 300.00170 * 19 17 16 40 40 H 1.08996 * 109.46991 * 59.99604 * 19 17 16 41 41 H 0.97003 * 119.99438 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0783 -0.7966 -1.2105 5 7 3.4338 -1.2150 -0.7611 6 6 3.8941 -2.2949 -1.4967 7 7 5.0358 -2.1855 -2.1594 8 6 5.5066 -3.1987 -2.8679 9 6 4.7833 -4.3819 -2.9196 10 9 5.2321 -5.4350 -3.6370 11 6 3.5888 -4.4594 -2.2173 12 7 3.1787 -3.4093 -1.5248 13 6 3.2893 -1.5698 0.6675 14 6 2.0771 -0.7907 1.2105 15 1 1.3207 -1.4807 1.5848 16 7 2.4967 0.1271 2.2724 17 6 2.5770 -0.3070 3.5458 18 8 2.3015 -1.4577 3.8126 19 6 3.0092 0.6370 4.6381 20 16 3.0163 -0.2370 6.2230 21 6 3.5437 1.0643 7.2875 22 1 3.7513 2.0434 6.8817 23 6 3.6923 0.8311 8.6477 24 7 3.4397 -0.3623 9.1423 25 14 4.2520 2.2105 9.7762 26 1 3.2796 3.3308 9.7084 27 1 4.3318 1.7074 11.1710 28 1 5.5901 2.6898 9.3461 29 1 -0.3633 0.4641 0.9169 30 1 -0.3633 0.5620 -0.8604 31 1 -0.3633 -1.0261 -0.0566 32 1 1.4560 -1.6688 -1.4108 33 1 2.1417 -0.1600 -2.0931 34 1 6.4404 -3.1048 -3.4024 35 1 3.0015 -5.3654 -2.2358 36 1 4.1887 -1.2851 1.2136 37 1 3.1175 -2.6415 0.7684 38 1 2.7168 1.0474 2.0591 39 1 4.0113 1.0075 4.4225 40 1 2.3149 1.4757 4.6891 41 1 3.5433 -0.5251 10.0929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090677567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -6.530834 kcal Electronic energy + Delta-G solvation = -26099.377700 eV Core-core repulsion = 22056.051371 eV Total energy + Delta-G solvation = -4043.326329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.57527 -41.78247 -39.94398 -38.35437 -34.83186 -34.39284 -33.00966 -32.42204 -30.88825 -29.82934 -27.74406 -26.44723 -25.53085 -25.45956 -23.83688 -22.01190 -20.80947 -20.11053 -18.89976 -18.23034 -17.92144 -17.75924 -16.79984 -16.59434 -16.23777 -15.61205 -15.29191 -15.03297 -14.83548 -14.79931 -14.42945 -14.07328 -13.75003 -13.59797 -13.52758 -13.17906 -13.10019 -12.84214 -12.52582 -12.42900 -12.17241 -11.98859 -11.54150 -11.45116 -11.34316 -11.04847 -11.03268 -10.98650 -10.75848 -10.03567 -9.82153 -9.71852 -9.41187 -9.06986 -9.05489 -8.94441 -8.23915 -6.49691 -6.21135 -3.91727 0.06915 0.37655 2.70949 2.93864 3.01971 3.06485 3.24098 3.25188 3.27909 3.31148 3.51990 3.70347 4.02005 4.10847 4.13296 4.21045 4.30207 4.42021 4.71409 4.94068 5.02138 5.07654 5.13978 5.14856 5.17773 5.26265 5.39553 5.52805 5.54704 5.62131 5.71707 5.78662 5.81297 5.89594 5.91276 6.09982 6.14865 6.23456 6.61235 6.66862 7.47322 7.59863 7.68904 8.35574 8.58719 9.24134 10.86213 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002128 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.070088 B =13155.798091 C =13982.082205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.095 0.905 4 C 0.050 3.950 5 N -0.455 5.455 6 C 0.475 3.525 7 N -0.465 5.465 8 C 0.137 3.863 9 C -0.014 4.014 10 F -0.119 7.119 11 C 0.140 3.860 12 N -0.515 5.515 13 C 0.035 3.965 14 C 0.148 3.852 15 H 0.103 0.897 16 N -0.729 5.729 17 C 0.533 3.467 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.185 0.815 35 H 0.181 0.819 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -3.080 -28.189 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.113 0.887 4 C -0.077 4.077 5 N -0.181 5.181 6 C 0.120 3.880 7 N -0.179 5.179 8 C -0.032 4.032 9 C -0.039 4.039 10 F -0.097 7.097 11 C -0.030 4.030 12 N -0.232 5.232 13 C -0.093 4.093 14 C 0.041 3.959 15 H 0.121 0.879 16 N -0.383 5.383 17 C 0.319 3.681 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.202 0.798 35 H 0.198 0.802 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.235 0.765 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.912 -3.941 -27.114 27.466 hybrid contribution 0.830 1.002 -0.249 1.325 sum -1.082 -2.940 -27.364 27.542 Atomic orbital electron populations 1.21777 0.93171 1.02560 1.02607 1.22350 0.96590 1.00024 0.92741 0.88715 1.23449 0.86271 0.99472 0.98477 1.62248 1.25837 1.26899 1.03071 1.21426 0.87364 0.87965 0.91219 1.68177 1.12850 1.29982 1.06880 1.23498 0.99400 0.86375 0.93961 1.19542 0.97866 0.87561 0.98892 1.91565 1.88658 1.54270 1.75234 1.23336 0.92132 0.97773 0.89716 1.68591 1.34868 1.00702 1.19014 1.23495 1.00582 1.00315 0.84873 1.21721 0.95054 0.91934 0.87199 0.87945 1.46079 1.71202 1.14348 1.06666 1.20369 0.76349 0.88745 0.82629 1.90708 1.47264 1.18803 1.82243 1.23531 1.04092 1.02241 1.00533 1.85389 1.88707 1.16410 0.92864 1.22828 1.52824 0.98103 0.94634 0.90954 1.24995 0.94951 0.96419 0.97227 1.70011 1.45705 1.20721 1.13888 0.86224 0.79217 0.81068 0.78996 1.19927 1.20831 1.19933 0.91535 0.92036 0.92111 0.91254 0.89203 0.79816 0.80162 0.88830 0.91341 0.76459 0.89134 0.89151 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.16 37.16 0.34 -0.71 16 2 C -0.10 -0.82 3.37 -88.76 -0.30 -1.11 16 3 H 0.09 0.72 7.74 -51.93 -0.40 0.31 16 4 C 0.05 0.44 5.92 -1.74 -0.01 0.43 16 5 N -0.46 -5.09 5.36 -171.16 -0.92 -6.01 16 6 C 0.47 5.37 6.39 -322.71 -2.06 3.31 16 7 N -0.47 -5.04 10.47 -13.86 -0.15 -5.18 16 8 C 0.14 1.06 11.29 -17.15 -0.19 0.87 16 9 C -0.01 -0.11 7.38 -39.18 -0.29 -0.40 16 10 F -0.12 -0.84 17.29 2.25 0.04 -0.80 16 11 C 0.14 1.08 11.29 -17.15 -0.19 0.89 16 12 N -0.51 -5.31 8.79 -13.86 -0.12 -5.43 16 13 C 0.04 0.44 6.37 -2.75 -0.02 0.42 16 14 C 0.15 1.71 2.87 -66.58 -0.19 1.52 16 15 H 0.10 1.36 7.35 -51.93 -0.38 0.98 16 16 N -0.73 -9.36 5.03 -52.49 -0.26 -9.63 16 17 C 0.53 9.63 7.84 -10.99 -0.09 9.54 16 18 O -0.52 -11.39 15.56 5.55 0.09 -11.31 16 19 C -0.15 -3.04 6.16 36.01 0.22 -2.81 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 25 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.07 0.62 7.27 -51.93 -0.38 0.24 16 33 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.18 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.09 1.31 7.92 -51.93 -0.41 0.90 16 37 H 0.07 0.93 7.20 -51.93 -0.37 0.56 16 38 H 0.40 4.05 8.35 -40.82 -0.34 3.71 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -35.25 367.08 -10.09 -45.34 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.21 Total: 1.37 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.58 Total: -0.98 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.72 Total: -51.69 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.04 Total: -0.80 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.25 -10.09 -45.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090677567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.810 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds