Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.27252 * 2 1 4 4 C 1.53991 * 110.30821 * 237.91294 * 2 1 3 5 5 N 1.47904 * 107.05923 * 242.21122 * 4 2 1 6 6 C 1.39122 * 110.99793 * 214.15629 * 5 4 2 7 7 N 1.32568 * 120.11139 * 359.97438 * 6 5 4 8 8 C 1.32307 * 119.94201 * 179.97438 * 7 6 5 9 9 C 1.38062 * 120.16738 * 359.97438 * 8 7 6 10 10 N 1.32344 * 120.21892 * 0.27677 * 9 8 7 11 11 C 1.32074 * 120.05740 * 359.44585 * 10 9 8 12 12 F 1.35104 * 120.08274 * 180.26996 * 11 10 9 13 13 C 1.48528 * 105.81843 * 334.66619 * 5 4 2 14 14 C 1.54597 * 110.39436 * 122.15106 * 2 1 3 15 15 H 1.09007 * 110.72401 * 22.37528 * 14 2 1 16 16 N 1.46500 * 110.72010 * 259.27832 * 14 2 1 17 17 C 1.34775 * 120.00254 * 155.00392 * 16 14 2 18 18 O 1.21284 * 120.00089 * 359.97438 * 17 16 14 19 19 C 1.50701 * 120.00412 * 179.97438 * 17 16 14 20 20 S 1.81000 * 109.47453 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00009 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99951 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99640 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99488 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00166 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47065 * 90.00224 * 25 23 21 27 27 H 1.48500 * 109.47203 * 210.00043 * 25 23 21 28 28 H 1.48493 * 109.47238 * 330.00270 * 25 23 21 29 29 H 1.09008 * 109.46958 * 180.63499 * 1 2 3 30 30 H 1.08995 * 109.46953 * 300.62989 * 1 2 3 31 31 H 1.08995 * 109.47275 * 60.63550 * 1 2 3 32 32 H 1.09004 * 109.91737 * 122.85486 * 4 2 1 33 33 H 1.09003 * 110.08290 * 1.65184 * 4 2 1 34 34 H 1.08000 * 119.91534 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.88548 * 179.97438 * 9 8 7 36 36 H 1.09002 * 110.66674 * 157.64340 * 13 5 4 37 37 H 1.08997 * 110.67348 * 280.77361 * 13 5 4 38 38 H 0.97009 * 120.00043 * 334.98858 * 16 14 2 39 39 H 1.09000 * 109.46565 * 299.99785 * 19 17 16 40 40 H 1.09007 * 109.46851 * 59.99384 * 19 17 16 41 41 H 0.97005 * 119.99753 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7672 -1.2236 5 7 2.8333 -1.9216 -0.7100 6 6 3.9162 -2.2064 -1.5356 7 7 4.1377 -1.4742 -2.6183 8 6 5.1689 -1.7477 -3.4009 9 6 6.0157 -2.7937 -3.0926 10 7 5.7978 -3.5320 -2.0161 11 6 4.7742 -3.2633 -1.2258 12 9 4.5545 -4.0133 -0.1237 13 6 3.2882 -1.5326 0.6493 14 6 2.0688 -0.7711 1.2268 15 1 1.3195 -1.4670 1.6046 16 7 2.4883 0.1575 2.2794 17 6 2.5067 -0.2453 3.5654 18 8 2.1754 -1.3764 3.8514 19 6 2.9388 0.7097 4.6481 20 16 2.8554 -0.1210 6.2541 21 6 3.3980 1.1863 7.3034 22 1 3.6593 2.1450 6.8804 23 6 3.4907 0.9835 8.6733 24 7 3.8966 1.9600 9.4572 25 14 3.0395 -0.6750 9.4047 26 1 4.2442 -1.5423 9.4456 27 1 2.5203 -0.4836 10.7828 28 1 1.9952 -1.3177 8.5671 29 1 -0.3633 -1.0277 0.0114 30 1 -0.3633 0.5236 0.8843 31 1 -0.3633 0.5039 -0.8956 32 1 2.7148 -0.1203 -1.8125 33 1 1.2347 -1.1173 -1.8376 34 1 5.3487 -1.1511 -4.2831 35 1 6.8558 -3.0132 -3.7348 36 1 3.5091 -2.4160 1.2485 37 1 4.1581 -0.8784 0.5915 38 1 2.7532 1.0623 2.0507 39 1 3.9621 1.0341 4.4592 40 1 2.2779 1.5766 4.6530 41 1 3.9611 1.8185 10.4147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090677700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -7.502587 kcal Electronic energy + Delta-G solvation = -26595.151016 eV Core-core repulsion = 22551.782549 eV Total energy + Delta-G solvation = -4043.368467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.38287 -41.76666 -40.15122 -38.66367 -35.50156 -34.15786 -33.12167 -32.45501 -30.79583 -29.97772 -27.96322 -26.84531 -25.63179 -24.72126 -24.13903 -22.16016 -20.88933 -20.38089 -18.75954 -18.47994 -18.10939 -17.77675 -16.78564 -16.59988 -16.08627 -15.51939 -15.24991 -15.19068 -14.96528 -14.67216 -14.44440 -14.35685 -14.02599 -13.85858 -13.70852 -13.51017 -13.27432 -12.81369 -12.55212 -12.38298 -12.33027 -12.20482 -11.69419 -11.57988 -11.36169 -11.27758 -11.01978 -10.98102 -10.62491 -10.34340 -9.87699 -9.81245 -9.61775 -9.18189 -9.01485 -8.74846 -8.52780 -6.94255 -6.30695 -4.02768 0.10463 0.43321 2.53613 2.74236 2.84667 2.91505 3.13266 3.31635 3.34892 3.49680 3.59074 3.60819 3.76788 4.06282 4.21857 4.31774 4.46404 4.51782 4.56322 4.69483 4.80621 4.87455 4.93959 5.08465 5.09690 5.21165 5.24903 5.38049 5.49206 5.58516 5.64467 5.66956 5.69245 5.71869 5.87907 5.95675 6.00484 6.34307 6.45156 6.60757 7.05726 7.48329 7.92302 8.38726 8.39758 9.15452 10.78491 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.002466 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.484034 B =11350.463555 C =12175.148246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.087 0.913 4 C 0.042 3.958 5 N -0.448 5.448 6 C 0.248 3.752 7 N -0.452 5.452 8 C 0.066 3.934 9 C 0.054 3.946 10 N -0.450 5.450 11 C 0.258 3.742 12 F -0.091 7.091 13 C 0.026 3.974 14 C 0.152 3.848 15 H 0.113 0.887 16 N -0.729 5.729 17 C 0.532 3.468 18 O -0.512 6.512 19 C -0.125 4.125 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -3.751 -29.942 30.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.105 0.895 4 C -0.084 4.084 5 N -0.166 5.166 6 C 0.010 3.990 7 N -0.171 5.171 8 C -0.094 4.094 9 C -0.105 4.105 10 N -0.170 5.170 11 C 0.097 3.903 12 F -0.070 7.070 13 C -0.101 4.101 14 C 0.045 3.955 15 H 0.131 0.869 16 N -0.383 5.383 17 C 0.318 3.682 18 O -0.386 6.386 19 C -0.275 4.275 20 S 0.087 5.913 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.197 0.803 35 H 0.198 0.802 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.335 -6.058 -29.154 29.807 hybrid contribution 0.999 1.586 0.139 1.880 sum -0.336 -4.471 -29.015 29.360 Atomic orbital electron populations 1.21827 0.93052 1.02758 1.02315 1.22332 0.97720 0.99564 0.93338 0.89479 1.23050 0.98213 0.90280 0.96904 1.61898 1.14763 1.37393 1.02581 1.20760 0.91192 0.92789 0.94216 1.68409 1.19285 1.25000 1.04394 1.23689 0.90166 0.96626 0.98945 1.23484 1.00707 0.92773 0.93519 1.67776 1.16730 1.28118 1.04336 1.18601 0.93658 0.90961 0.87074 1.91700 1.93154 1.74397 1.47752 1.23922 0.98182 1.01474 0.86520 1.21818 0.95158 0.91602 0.86925 0.86887 1.45961 1.70516 1.15791 1.06050 1.20362 0.76642 0.88542 0.82642 1.90722 1.45888 1.20003 1.81968 1.23282 1.04863 1.01507 0.97862 1.84818 1.88519 1.21569 0.96436 1.22308 1.51538 0.99184 0.93934 0.89392 1.24718 0.93423 0.97233 0.95952 1.69941 1.44765 1.31986 1.04967 0.86734 0.81077 0.84108 0.79938 1.19186 1.19923 1.15883 0.91816 0.91865 0.92102 0.89696 0.88996 0.80251 0.80194 0.87582 0.91994 0.76456 0.88484 0.88346 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.90 37.16 0.33 -0.70 16 2 C -0.11 -0.85 3.32 -89.26 -0.30 -1.15 16 3 H 0.09 0.57 7.75 -51.93 -0.40 0.17 16 4 C 0.04 0.35 6.02 -2.75 -0.02 0.33 16 5 N -0.45 -4.64 5.22 -169.00 -0.88 -5.52 16 6 C 0.25 2.60 6.22 -154.58 -0.96 1.64 16 7 N -0.45 -3.93 8.33 -12.17 -0.10 -4.03 16 8 C 0.07 0.38 11.21 -17.41 -0.20 0.18 16 9 C 0.05 0.35 11.21 -17.40 -0.19 0.15 16 10 N -0.45 -4.71 10.50 -13.24 -0.14 -4.84 16 11 C 0.26 3.00 8.18 -16.93 -0.14 2.86 16 12 F -0.09 -1.19 15.71 2.25 0.04 -1.16 16 13 C 0.03 0.29 5.52 -1.90 -0.01 0.27 16 14 C 0.15 1.63 2.98 -66.07 -0.20 1.43 16 15 H 0.11 1.45 7.27 -51.92 -0.38 1.07 16 16 N -0.73 -8.50 5.18 -52.00 -0.27 -8.77 16 17 C 0.53 8.92 7.85 -10.99 -0.09 8.83 16 18 O -0.51 -10.58 15.51 5.55 0.09 -10.50 16 19 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 20 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 21 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 22 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 23 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 24 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 25 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.23 -5.93 6.74 56.52 0.38 -5.55 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.68 6.52 -51.93 -0.34 0.35 16 33 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 34 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 35 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.11 1.39 7.15 -51.93 -0.37 1.02 16 37 H 0.06 0.67 8.00 -51.93 -0.42 0.26 16 38 H 0.40 3.52 8.39 -40.82 -0.34 3.17 16 39 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 40 H 0.10 1.69 8.14 -51.91 -0.42 1.26 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -35.25 360.65 -8.28 -43.53 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.18 Total: 0.15 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.33 Total: -0.14 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.62 Total: -48.84 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.25 -8.28 -43.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090677700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.025 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds