Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21283 * 120.00280 * 359.97331 * 6 5 4 8 8 C 1.50706 * 120.00115 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47300 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00169 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99625 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00043 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00086 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99865 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47052 * 60.00392 * 14 12 10 16 16 H 1.48496 * 109.47114 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47137 * 300.00397 * 14 12 10 18 18 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 19 19 C 1.54327 * 107.26790 * 358.93814 * 18 5 4 20 20 H 1.09001 * 110.71543 * 96.16961 * 19 18 5 21 21 N 1.46497 * 110.71583 * 219.44194 * 19 18 5 22 22 C 1.38532 * 120.00238 * 268.52394 * 21 19 18 23 23 N 1.32460 * 119.18752 * 359.72852 * 22 21 19 24 24 C 1.32298 * 120.76202 * 179.76042 * 23 22 21 25 25 C 1.38778 * 119.17207 * 0.50709 * 24 23 22 26 26 F 1.35098 * 120.74944 * 179.76737 * 25 24 23 27 27 C 1.38790 * 118.50886 * 359.74813 * 25 24 23 28 28 N 1.32300 * 119.16532 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 30 30 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 31 31 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 32 32 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 33 33 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 34 34 H 1.09005 * 109.46757 * 300.00262 * 8 6 5 35 35 H 1.08998 * 109.46915 * 59.99877 * 8 6 5 36 36 H 0.96998 * 119.99736 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.88066 * 239.51797 * 18 5 4 38 38 H 1.08996 * 110.00664 * 118.42784 * 18 5 4 39 39 H 0.96996 * 119.99952 * 88.52453 * 21 19 18 40 40 H 1.07998 * 120.41414 * 180.27486 * 24 23 22 41 41 H 1.07996 * 120.41383 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3032 -1.4969 -2.7952 8 6 5.7732 -1.9901 -1.0160 9 16 6.9313 -2.3432 -2.3614 10 6 8.3515 -2.8090 -1.4284 11 1 8.3121 -2.8098 -0.3491 12 6 9.5209 -3.1751 -2.0805 13 7 9.5690 -3.1737 -3.3959 14 14 11.0267 -3.6683 -1.0912 15 1 10.7014 -4.8474 -0.2492 16 1 12.1363 -4.0113 -2.0166 17 1 11.4397 -2.5377 -0.2214 18 6 3.4678 -1.2731 0.6969 19 6 2.0861 -0.8075 1.2025 20 1 1.4471 -1.6631 1.4211 21 7 2.2278 0.0502 2.3817 22 6 2.1987 -0.5058 3.6502 23 7 2.0364 -1.8142 3.7785 24 6 2.0086 -2.3786 4.9747 25 6 2.1414 -1.5806 6.1024 26 9 2.1128 -2.1228 7.3394 27 6 2.3045 -0.2131 5.9307 28 7 2.3278 0.2847 4.7051 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5248 -0.8836 31 1 -0.3633 -1.0275 -0.0125 32 1 1.4531 -1.6706 -1.4022 33 1 2.1567 -0.1721 -2.0834 34 1 6.1747 -1.1920 -0.3915 35 1 5.6319 -2.8871 -0.4130 36 1 10.3861 -3.4298 -3.8515 37 1 4.2425 -0.5984 1.0609 38 1 3.6669 -2.2872 1.0433 39 1 2.3421 1.0074 2.2743 40 1 1.8804 -3.4464 5.0726 41 1 2.4103 0.4366 6.7869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090952370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -15.352757 kcal Electronic energy + Delta-G solvation = -26178.305839 eV Core-core repulsion = 22134.596963 eV Total energy + Delta-G solvation = -4043.708876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.24006 -41.39716 -40.05375 -37.93758 -35.29771 -34.26298 -33.04566 -32.43440 -30.75709 -29.49357 -28.35604 -26.20172 -25.45090 -25.40452 -24.08620 -22.47516 -21.00683 -19.42957 -18.76775 -18.46109 -17.80539 -17.69380 -16.66097 -16.54356 -16.32832 -15.49005 -15.23945 -15.02263 -14.92729 -14.80752 -14.54448 -14.09284 -13.93414 -13.79856 -13.48241 -13.38622 -13.04419 -12.71893 -12.49840 -12.34530 -12.20095 -11.93199 -11.80595 -11.44743 -11.42176 -11.09405 -11.04337 -11.03061 -10.77162 -10.60614 -9.83301 -9.58605 -9.46512 -9.06395 -8.59343 -8.45210 -8.25307 -6.51244 -6.22031 -3.92962 0.52962 0.53448 2.24545 2.89593 3.02564 3.23299 3.25268 3.27880 3.29030 3.55169 3.58237 3.62907 3.97134 4.13922 4.20058 4.26210 4.37462 4.43268 4.56132 4.85079 4.98434 5.03313 5.04952 5.13031 5.14529 5.36022 5.43585 5.49931 5.52638 5.59944 5.68510 5.74026 5.80409 5.90501 5.91624 6.12837 6.22373 6.33075 6.52201 6.90862 7.57967 7.59830 7.74985 8.34583 8.50878 9.23105 10.85388 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.002757 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.073432 B =10152.032983 C =12526.961133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 H 0.091 0.909 4 C 0.114 3.886 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.513 6.513 8 C -0.147 4.147 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 C 0.091 3.909 19 C 0.154 3.846 20 H 0.114 0.886 21 N -0.681 5.681 22 C 0.560 3.440 23 N -0.541 5.541 24 C 0.177 3.823 25 C -0.075 4.075 26 F -0.127 7.127 27 C 0.175 3.825 28 N -0.546 5.546 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.418 0.582 40 H 0.180 0.820 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.878 6.429 18.304 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 H 0.110 0.890 4 C -0.009 4.009 5 N -0.363 5.363 6 C 0.339 3.661 7 O -0.387 6.387 8 C -0.298 4.298 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.034 4.034 19 C 0.048 3.952 20 H 0.132 0.868 21 N -0.317 5.317 22 C 0.204 3.796 23 N -0.263 5.263 24 C 0.007 3.993 25 C -0.103 4.103 26 F -0.107 7.107 27 C 0.006 3.994 28 N -0.268 5.268 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.257 0.743 40 H 0.197 0.803 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.907 6.745 15.197 26.712 hybrid contribution 1.305 -0.492 3.243 3.530 sum -19.602 6.254 18.440 27.630 Atomic orbital electron populations 1.21692 0.92976 1.02667 1.02389 1.22693 0.96900 0.99880 0.93756 0.89033 1.22199 0.83435 0.98244 0.97038 1.48404 1.12243 1.69508 1.06171 1.20025 0.83993 0.76039 0.86032 1.90715 1.82290 1.51477 1.14208 1.23514 0.96256 1.03868 1.06122 1.85373 1.04914 1.87412 1.05573 1.22815 0.97994 1.52856 0.94751 0.91021 1.24985 0.98459 0.94916 0.95149 1.70006 1.28230 1.44962 1.07084 0.86227 0.80813 0.79048 0.79443 1.19907 1.20767 1.19943 1.22415 0.97714 1.02467 0.80840 1.22104 0.96019 0.93988 0.83139 0.86784 1.44102 1.77197 1.10297 1.00100 1.19374 0.88301 0.85217 0.86745 1.67997 1.21071 1.11090 1.26105 1.23166 0.89551 1.01142 0.85424 1.19137 1.14592 0.94420 0.82143 1.91522 1.94740 1.85907 1.38485 1.23108 0.89785 0.91666 0.94884 1.67953 1.21467 1.39261 0.98076 0.92131 0.91694 0.91944 0.91082 0.89775 0.89424 0.89287 0.92106 0.91072 0.90488 0.74345 0.80319 0.80426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.29 37.16 0.35 -0.48 16 2 C -0.11 -0.85 3.27 -88.47 -0.29 -1.14 16 3 H 0.09 0.65 8.01 -51.93 -0.42 0.23 16 4 C 0.11 1.25 6.38 -2.53 -0.02 1.23 16 5 N -0.63 -8.82 3.33 -170.52 -0.57 -9.39 16 6 C 0.55 10.63 7.87 -10.98 -0.09 10.55 16 7 O -0.51 -11.83 16.12 5.56 0.09 -11.74 16 8 C -0.15 -3.07 5.35 36.01 0.19 -2.88 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 11 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 14 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.09 1.02 6.24 -3.06 -0.02 1.00 16 19 C 0.15 1.29 2.79 -66.10 -0.18 1.10 16 20 H 0.11 0.99 7.37 -51.93 -0.38 0.60 16 21 N -0.68 -5.45 5.26 -54.00 -0.28 -5.74 16 22 C 0.56 5.28 8.43 -322.72 -2.72 2.56 16 23 N -0.54 -5.07 9.18 -13.87 -0.13 -5.19 16 24 C 0.18 1.35 11.29 -17.15 -0.19 1.15 16 25 C -0.08 -0.57 7.38 -39.18 -0.29 -0.86 16 26 F -0.13 -1.00 17.30 2.25 0.04 -0.96 16 27 C 0.18 1.29 11.29 -17.15 -0.19 1.09 16 28 N -0.55 -5.00 10.46 -13.86 -0.14 -5.14 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 33 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 35 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.42 2.85 8.68 -40.82 -0.35 2.50 16 40 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -35.41 370.07 -10.50 -45.91 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.33 Total: -0.69 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -3.25 Total: 0.26 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.39 Total: -51.02 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.41 -10.50 -45.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090952370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.557 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds