Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21283 * 120.00280 * 359.97331 * 6 5 4 8 8 C 1.50706 * 120.00115 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47300 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00169 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99625 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00043 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00086 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99865 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47052 * 60.00392 * 14 12 10 16 16 H 1.48496 * 109.47114 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47137 * 300.00397 * 14 12 10 18 18 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 19 19 C 1.54327 * 107.26790 * 358.93814 * 18 5 4 20 20 H 1.09001 * 110.71543 * 96.16961 * 19 18 5 21 21 N 1.46497 * 110.71583 * 219.44194 * 19 18 5 22 22 C 1.38532 * 120.00238 * 268.52394 * 21 19 18 23 23 N 1.32460 * 119.18752 * 359.72852 * 22 21 19 24 24 C 1.32298 * 120.76202 * 179.76042 * 23 22 21 25 25 C 1.38778 * 119.17207 * 0.50709 * 24 23 22 26 26 F 1.35098 * 120.74944 * 179.76737 * 25 24 23 27 27 C 1.38790 * 118.50886 * 359.74813 * 25 24 23 28 28 N 1.32300 * 119.16532 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 30 30 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 31 31 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 32 32 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 33 33 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 34 34 H 1.09005 * 109.46757 * 300.00262 * 8 6 5 35 35 H 1.08998 * 109.46915 * 59.99877 * 8 6 5 36 36 H 0.96998 * 119.99736 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.88066 * 239.51797 * 18 5 4 38 38 H 1.08996 * 110.00664 * 118.42784 * 18 5 4 39 39 H 0.96996 * 119.99952 * 88.52453 * 21 19 18 40 40 H 1.07998 * 120.41414 * 180.27486 * 24 23 22 41 41 H 1.07996 * 120.41383 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3032 -1.4969 -2.7952 8 6 5.7732 -1.9901 -1.0160 9 16 6.9313 -2.3432 -2.3614 10 6 8.3515 -2.8090 -1.4284 11 1 8.3121 -2.8098 -0.3491 12 6 9.5209 -3.1751 -2.0805 13 7 9.5690 -3.1737 -3.3959 14 14 11.0267 -3.6683 -1.0912 15 1 10.7014 -4.8474 -0.2492 16 1 12.1363 -4.0113 -2.0166 17 1 11.4397 -2.5377 -0.2214 18 6 3.4678 -1.2731 0.6969 19 6 2.0861 -0.8075 1.2025 20 1 1.4471 -1.6631 1.4211 21 7 2.2278 0.0502 2.3817 22 6 2.1987 -0.5058 3.6502 23 7 2.0364 -1.8142 3.7785 24 6 2.0086 -2.3786 4.9747 25 6 2.1414 -1.5806 6.1024 26 9 2.1128 -2.1228 7.3394 27 6 2.3045 -0.2131 5.9307 28 7 2.3278 0.2847 4.7051 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5248 -0.8836 31 1 -0.3633 -1.0275 -0.0125 32 1 1.4531 -1.6706 -1.4022 33 1 2.1567 -0.1721 -2.0834 34 1 6.1747 -1.1920 -0.3915 35 1 5.6319 -2.8871 -0.4130 36 1 10.3861 -3.4298 -3.8515 37 1 4.2425 -0.5984 1.0609 38 1 3.6669 -2.2872 1.0433 39 1 2.3421 1.0074 2.2743 40 1 1.8804 -3.4464 5.0726 41 1 2.4103 0.4366 6.7869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090952370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -37.554807 kcal Electronic energy + Delta-G solvation = -26179.268592 eV Core-core repulsion = 22134.596963 eV Total energy + Delta-G solvation = -4044.671629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.83311 -42.03299 -41.17077 -39.14988 -36.14462 -34.87106 -34.61626 -33.98958 -31.44109 -30.96792 -29.19357 -27.78234 -26.95946 -26.03568 -24.84137 -23.28757 -21.71586 -20.82396 -19.62590 -19.40472 -19.08010 -18.39379 -18.04713 -17.50694 -16.99219 -16.90945 -16.69446 -16.26648 -15.99435 -15.68893 -15.57896 -15.18305 -14.90075 -14.77394 -14.52519 -14.25389 -14.15311 -14.04100 -13.58774 -13.40693 -13.19532 -13.09427 -12.89172 -12.81851 -12.67341 -12.52096 -12.12279 -12.04822 -11.80134 -11.73959 -11.29762 -11.15646 -11.00016 -10.33675 -10.20181 -9.79086 -9.10726 -8.71320 -8.37237 -6.16387 -0.07716 -0.03901 1.18944 1.40418 1.41961 1.48825 1.51752 1.63625 2.08589 2.24673 2.65696 2.96681 2.98109 3.05413 3.12917 3.32857 3.45963 3.58715 3.79257 3.81462 3.85881 3.93507 4.06590 4.18903 4.23385 4.38286 4.44972 4.60425 4.65354 4.68662 4.74103 4.83329 4.97074 5.13400 5.21438 5.28214 5.38138 5.39276 5.59114 5.92328 6.16536 6.26885 6.30065 7.03440 7.04108 7.13780 8.71887 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.002757 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.073432 B =10152.032983 C =12526.961133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 H 0.101 0.899 4 C 0.107 3.893 5 N -0.614 5.614 6 C 0.549 3.451 7 O -0.561 6.561 8 C -0.122 4.122 9 S -0.144 6.144 10 C -0.550 4.550 11 H 0.080 0.920 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.263 1.263 18 C 0.086 3.914 19 C 0.169 3.831 20 H 0.118 0.882 21 N -0.675 5.675 22 C 0.548 3.452 23 N -0.558 5.558 24 C 0.173 3.827 25 C -0.077 4.077 26 F -0.129 7.129 27 C 0.174 3.826 28 N -0.561 5.561 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.272 0.728 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.424 0.576 40 H 0.202 0.798 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.704 6.718 21.126 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 H 0.119 0.881 4 C -0.016 4.016 5 N -0.349 5.349 6 C 0.337 3.663 7 O -0.439 6.439 8 C -0.273 4.273 9 S 0.083 5.917 10 C -0.697 4.697 11 H 0.098 0.902 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.187 1.187 18 C -0.039 4.039 19 C 0.062 3.938 20 H 0.135 0.865 21 N -0.312 5.312 22 C 0.191 3.809 23 N -0.280 5.280 24 C 0.004 3.996 25 C -0.105 4.105 26 F -0.108 7.108 27 C 0.005 3.995 28 N -0.282 5.282 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.264 0.736 40 H 0.219 0.781 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -21.783 7.053 18.084 29.177 hybrid contribution 1.436 -0.561 2.478 2.919 sum -20.347 6.492 20.563 29.648 Atomic orbital electron populations 1.21667 0.91134 1.03164 1.03197 1.22617 0.98110 0.99478 0.91292 0.88128 1.22488 0.81734 0.99038 0.98313 1.48276 1.12186 1.67200 1.07216 1.19682 0.84501 0.76366 0.85731 1.90693 1.83095 1.54001 1.16088 1.23310 0.95632 1.04925 1.03414 1.85515 1.07612 1.87940 1.10638 1.23145 0.98403 1.53070 0.95113 0.90187 1.26122 1.02041 0.94487 0.96303 1.70168 1.29332 1.45953 1.09153 0.85012 0.76076 0.79151 0.77818 1.18635 1.20130 1.18711 1.22644 0.99834 1.02617 0.78772 1.21908 0.93990 0.94350 0.83508 0.86451 1.44006 1.77145 1.10450 0.99596 1.19574 0.88620 0.85517 0.87165 1.68031 1.21904 1.11150 1.26905 1.23575 0.88700 1.02282 0.85026 1.19186 1.14585 0.94638 0.82066 1.91521 1.94762 1.85954 1.38579 1.23574 0.88638 0.92114 0.95136 1.68002 1.22162 1.39501 0.98553 0.91222 0.90963 0.91652 0.90067 0.90820 0.88067 0.87930 0.91862 0.91158 0.90641 0.73643 0.78102 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.29 71.98 0.67 -0.54 16 2 C -0.10 -1.22 3.27 -9.40 -0.03 -1.25 16 3 H 0.10 1.17 8.01 -2.39 -0.02 1.15 16 4 C 0.11 2.20 6.38 86.86 0.55 2.76 16 5 N -0.61 -16.88 3.33 -811.79 -2.70 -19.58 16 6 C 0.55 21.46 7.87 87.66 0.69 22.15 16 7 O -0.56 -26.74 16.12 -3.04 -0.05 -26.79 16 8 C -0.12 -5.12 5.35 71.24 0.38 -4.74 16 9 S -0.14 -8.19 20.57 -56.49 -1.16 -9.35 16 10 C -0.55 -31.96 9.50 67.95 0.65 -31.31 16 11 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 12 C 0.02 0.89 5.49 84.86 0.47 1.36 16 13 N -0.91 -56.28 13.22 21.65 0.29 -56.00 16 14 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 18 C 0.09 1.80 6.24 86.73 0.54 2.35 16 19 C 0.17 2.47 2.79 46.18 0.13 2.60 16 20 H 0.12 1.74 7.37 -2.39 -0.02 1.73 16 21 N -0.67 -9.40 5.26 -324.74 -1.71 -11.11 16 22 C 0.55 9.28 8.43 261.46 2.20 11.49 16 23 N -0.56 -9.40 9.18 -197.78 -1.82 -11.22 16 24 C 0.17 2.30 11.29 84.75 0.96 3.26 16 25 C -0.08 -1.02 7.38 22.53 0.17 -0.85 16 26 F -0.13 -1.78 17.30 44.97 0.78 -1.01 16 27 C 0.17 2.20 11.29 84.75 0.96 3.15 16 28 N -0.56 -9.18 10.46 -197.78 -2.07 -11.25 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.08 1.56 8.03 -2.39 -0.02 1.54 16 33 H 0.07 1.72 8.04 -2.39 -0.02 1.71 16 34 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 35 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 36 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.07 1.53 8.03 -2.39 -0.02 1.51 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.42 4.86 8.68 -92.71 -0.80 4.05 16 40 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -78.88 370.07 2.18 -76.69 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.26 Total: 13.21 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 8.33 Total: 10.42 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -8.00 Total: -109.15 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.78 Total: -1.01 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -78.88 2.18 -76.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090952370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.138 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds