Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.88683 * 2 1 4 4 C 1.54913 * 111.00255 * 236.12213 * 2 1 3 5 5 N 1.47427 * 104.82914 * 204.91854 * 4 2 1 6 6 C 1.34780 * 125.64341 * 204.09404 * 5 4 2 7 7 O 1.21280 * 120.00423 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99795 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47156 * 179.97438 * 8 6 5 10 10 C 1.76193 * 100.00049 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00026 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00056 * 180.02562 * 10 9 8 13 13 N 1.31623 * 119.99640 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47282 * 59.99711 * 14 12 10 16 16 H 1.48497 * 109.47200 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47280 * 300.00084 * 14 12 10 18 18 C 1.47015 * 108.70863 * 24.35548 * 5 4 2 19 19 C 1.54339 * 107.26094 * 358.58502 * 18 5 4 20 20 H 1.08999 * 110.66812 * 96.52877 * 19 18 5 21 21 N 1.46503 * 110.84648 * 219.67297 * 19 18 5 22 22 C 1.39121 * 119.99946 * 268.69116 * 21 19 18 23 23 N 1.32558 * 120.11142 * 0.02562 * 22 21 19 24 24 C 1.32305 * 119.94591 * 180.02562 * 23 22 21 25 25 C 1.38060 * 120.16751 * 359.97438 * 24 23 22 26 26 N 1.32350 * 120.21848 * 0.02562 * 25 24 23 27 27 C 1.32079 * 120.05451 * 359.70411 * 26 25 24 28 28 F 1.35099 * 120.08230 * 180.27723 * 27 26 25 29 29 H 1.08994 * 109.47172 * 182.42629 * 1 2 3 30 30 H 1.09006 * 109.46701 * 302.42644 * 1 2 3 31 31 H 1.09001 * 109.47192 * 62.42420 * 1 2 3 32 32 H 1.09000 * 110.36528 * 86.07887 * 4 2 1 33 33 H 1.08998 * 110.46001 * 323.79758 * 4 2 1 34 34 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 35 35 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 36 36 H 0.97010 * 119.99946 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.88560 * 118.12715 * 18 5 4 38 38 H 1.08996 * 109.88501 * 239.30026 * 18 5 4 39 39 H 0.96999 * 120.00166 * 88.69740 * 21 19 18 40 40 H 1.08003 * 119.92105 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.89590 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2428 -0.7738 6 6 4.4476 -1.5610 -1.5947 7 8 4.3006 -1.4996 -2.7970 8 6 5.7710 -1.9941 -1.0186 9 16 6.9275 -2.3503 -2.3647 10 6 8.3470 -2.8195 -1.4325 11 1 8.3083 -2.8200 -0.3531 12 6 9.5154 -3.1875 -2.0852 13 7 9.5627 -3.1865 -3.4006 14 14 11.0207 -3.6843 -1.0968 15 1 10.6933 -4.8632 -0.2552 16 1 12.1292 -4.0290 -2.0228 17 1 11.4363 -2.5550 -0.2266 18 6 3.4658 -1.2798 0.6954 19 6 2.0861 -0.8084 1.2018 20 1 1.4451 -1.6620 1.4223 21 7 2.2287 0.0486 2.3815 22 6 2.1996 -0.5105 3.6550 23 7 2.0434 -1.8185 3.8037 24 6 2.0156 -2.3466 5.0165 25 6 2.1494 -1.5390 6.1282 26 7 2.3057 -0.2323 5.9873 27 6 2.3401 0.3035 4.7806 28 9 2.5052 1.6365 4.6360 29 1 -0.3633 -1.0267 0.0435 30 1 -0.3633 0.5511 0.8675 31 1 -0.3633 0.4757 -0.9109 32 1 2.1559 -0.1711 -2.0838 33 1 1.4524 -1.6698 -1.4050 34 1 6.1740 -1.1966 -0.3944 35 1 5.6288 -2.8909 -0.4155 36 1 10.3792 -3.4440 -3.8568 37 1 3.6600 -2.2969 1.0356 38 1 4.2423 -0.6090 1.0628 39 1 2.3434 1.0058 2.2745 40 1 1.8879 -3.4123 5.1372 41 1 2.1257 -1.9747 7.1161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090961752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -15.604686 kcal Electronic energy + Delta-G solvation = -26447.805744 eV Core-core repulsion = 22404.085943 eV Total energy + Delta-G solvation = -4043.719801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.39636 -41.38883 -40.09822 -38.02485 -35.83795 -34.06042 -33.03078 -32.44023 -30.72275 -29.50489 -28.44316 -26.21766 -25.43398 -25.08867 -24.34082 -22.49134 -21.05480 -19.43963 -18.82607 -18.41388 -18.13384 -17.69228 -16.79291 -16.66092 -16.41971 -15.62895 -15.27667 -15.05708 -14.81340 -14.54989 -14.43868 -14.10729 -14.03289 -13.86484 -13.66512 -13.38303 -13.13858 -12.75191 -12.52014 -12.34020 -12.26773 -12.07977 -11.85620 -11.53980 -11.48100 -11.09082 -11.04786 -11.03297 -10.77663 -10.57140 -9.83909 -9.70770 -9.47242 -9.06926 -8.59390 -8.34151 -8.25976 -6.51924 -6.22578 -3.93550 0.32950 0.67530 2.29965 2.87411 3.00886 3.04798 3.17047 3.22874 3.25131 3.28519 3.57692 3.72767 3.81015 3.97055 4.19493 4.23991 4.48946 4.60806 4.70266 4.84580 4.97476 5.01330 5.03195 5.04121 5.12512 5.34479 5.41510 5.43285 5.49676 5.58145 5.66412 5.72643 5.76123 5.88270 5.90266 6.11783 6.30986 6.39713 6.48312 6.93602 7.34972 7.57138 7.59028 8.33961 8.49792 9.22539 10.84825 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.002808 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.407557 B = 9969.405608 C =11821.668008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 H 0.091 0.909 4 C 0.114 3.886 5 N -0.626 5.626 6 C 0.550 3.450 7 O -0.513 6.513 8 C -0.147 4.147 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 C 0.092 3.908 19 C 0.149 3.851 20 H 0.113 0.887 21 N -0.697 5.697 22 C 0.355 3.645 23 N -0.476 5.476 24 C 0.099 3.901 25 C 0.012 3.988 26 N -0.431 5.431 27 C 0.197 3.803 28 F -0.108 7.108 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.417 0.583 40 H 0.180 0.820 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.041 5.140 17.544 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 H 0.109 0.891 4 C -0.009 4.009 5 N -0.364 5.364 6 C 0.339 3.661 7 O -0.387 6.387 8 C -0.298 4.298 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.034 4.034 19 C 0.043 3.957 20 H 0.131 0.869 21 N -0.330 5.330 22 C 0.112 3.888 23 N -0.199 5.199 24 C -0.061 4.061 25 C -0.148 4.148 26 N -0.150 5.150 27 C 0.032 3.968 28 F -0.087 7.087 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.255 0.745 40 H 0.197 0.803 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -21.083 5.094 15.353 26.574 hybrid contribution 1.354 0.240 2.191 2.587 sum -19.729 5.335 17.544 26.935 Atomic orbital electron populations 1.21692 0.92975 1.02631 1.02416 1.22686 0.96903 0.99844 0.93834 0.89088 1.22194 0.83446 0.98242 0.97036 1.48413 1.12302 1.69461 1.06180 1.20030 0.84003 0.76043 0.86031 1.90715 1.82259 1.51473 1.14212 1.23513 0.96259 1.03847 1.06139 1.85376 1.05079 1.87260 1.05546 1.22816 0.98077 1.52804 0.94751 0.91019 1.24986 0.98457 0.94915 0.95148 1.70007 1.28268 1.44921 1.07071 0.86226 0.80803 0.79052 0.79439 1.19905 1.20763 1.19938 1.22409 0.97722 1.02383 0.80860 1.22112 0.95997 0.94065 0.83489 0.86909 1.44532 1.77437 1.10109 1.00906 1.19080 0.93601 0.89855 0.86230 1.68112 1.16921 1.08496 1.26370 1.23595 0.93314 1.02121 0.87023 1.23227 1.02971 0.87294 1.01282 1.67614 1.09265 1.14947 1.23190 1.18395 1.08702 0.79917 0.89803 1.91621 1.93028 1.28597 1.95495 0.91959 0.92152 0.91670 0.89803 0.91107 0.89426 0.89292 0.92101 0.90497 0.91097 0.74466 0.80319 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.29 37.16 0.35 -0.47 16 2 C -0.11 -0.85 3.27 -88.47 -0.29 -1.14 16 3 H 0.09 0.65 8.01 -51.93 -0.42 0.23 16 4 C 0.11 1.25 6.37 -2.53 -0.02 1.23 16 5 N -0.63 -8.80 3.33 -170.52 -0.57 -9.37 16 6 C 0.55 10.61 7.87 -10.98 -0.09 10.52 16 7 O -0.51 -11.81 16.12 5.56 0.09 -11.72 16 8 C -0.15 -3.06 5.35 36.01 0.19 -2.87 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 14 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 18 C 0.09 1.02 6.25 -3.06 -0.02 1.00 16 19 C 0.15 1.23 2.81 -66.09 -0.19 1.04 16 20 H 0.11 0.95 7.39 -51.93 -0.38 0.57 16 21 N -0.70 -5.37 5.26 -51.95 -0.27 -5.65 16 22 C 0.35 3.19 7.50 -154.59 -1.16 2.03 16 23 N -0.48 -4.15 9.36 -12.17 -0.11 -4.26 16 24 C 0.10 0.62 11.21 -17.41 -0.20 0.43 16 25 C 0.01 0.08 11.21 -17.39 -0.19 -0.11 16 26 N -0.43 -4.24 10.50 -13.24 -0.14 -4.38 16 27 C 0.20 1.95 8.47 -16.93 -0.14 1.81 16 28 F -0.11 -1.08 16.68 2.25 0.04 -1.05 16 29 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 34 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 35 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 39 H 0.42 2.71 8.05 -40.82 -0.33 2.38 16 40 H 0.18 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -36.03 369.10 -8.76 -44.79 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.30 Total: -1.46 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.55 Total: 0.40 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.36 Total: -49.17 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.03 -8.76 -44.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090961752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.186 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds