Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.90730 * 2 1 4 4 C 1.53998 * 109.91619 * 238.89481 * 2 1 3 5 5 H 1.09002 * 110.30791 * 358.14116 * 4 2 1 6 6 N 1.46498 * 110.30714 * 120.20971 * 4 2 1 7 7 C 1.34784 * 120.00190 * 203.61204 * 6 4 2 8 8 O 1.21282 * 119.99463 * 359.97438 * 7 6 4 9 9 C 1.50693 * 120.00153 * 180.02562 * 7 6 4 10 10 S 1.80999 * 109.47046 * 180.02562 * 9 7 6 11 11 C 1.76206 * 100.00186 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99646 * 0.02562 * 11 10 9 13 13 C 1.38790 * 120.00059 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00475 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00128 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46929 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47460 * 119.99544 * 15 13 11 18 18 H 1.48498 * 109.47449 * 240.00366 * 15 13 11 19 19 C 1.54601 * 105.14126 * 239.22386 * 4 2 1 20 20 C 1.54937 * 102.92036 * 338.04212 * 19 4 2 21 21 N 1.47901 * 110.08459 * 121.20899 * 2 1 3 22 22 C 1.38538 * 111.00218 * 265.28862 * 21 2 1 23 23 N 1.32457 * 119.18328 * 359.72749 * 22 21 2 24 24 C 1.32298 * 120.76375 * 179.76281 * 23 22 21 25 25 C 1.38786 * 119.16866 * 0.50152 * 24 23 22 26 26 F 1.35096 * 120.74692 * 179.73255 * 25 24 23 27 27 C 1.38784 * 118.50776 * 359.75273 * 25 24 23 28 28 N 1.32302 * 119.16642 * 359.97438 * 27 25 24 29 29 H 1.08999 * 109.47173 * 181.10582 * 1 2 3 30 30 H 1.09002 * 109.47018 * 301.10391 * 1 2 3 31 31 H 1.08999 * 109.47315 * 61.10321 * 1 2 3 32 32 H 0.97000 * 120.00268 * 23.60943 * 6 4 2 33 33 H 1.09004 * 109.47307 * 299.99818 * 9 7 6 34 34 H 1.08996 * 109.47708 * 59.99753 * 9 7 6 35 35 H 0.96991 * 120.00213 * 180.02562 * 14 13 11 36 36 H 1.08995 * 110.71966 * 96.39982 * 19 4 2 37 37 H 1.09000 * 110.72382 * 219.68278 * 19 4 2 38 38 H 1.08993 * 110.66829 * 278.97895 * 20 19 4 39 39 H 1.09004 * 110.66466 * 155.84641 * 20 19 4 40 40 H 1.07997 * 120.41922 * 180.27898 * 24 23 22 41 41 H 1.08002 * 120.41882 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0545 -0.7480 -1.2397 5 1 1.2228 -1.1399 -1.8251 6 7 2.8777 0.1433 -2.0607 7 6 3.0426 -0.1110 -3.3741 8 8 2.5098 -1.0781 -3.8759 9 6 3.8898 0.8055 -4.2185 10 16 3.9155 0.2018 -5.9246 11 6 4.9453 1.4242 -6.6663 12 1 5.3441 2.2298 -6.0677 13 6 5.2447 1.3512 -8.0196 14 7 4.7599 0.3685 -8.7489 15 14 6.3370 2.6467 -8.8057 16 1 6.7498 3.6361 -7.7780 17 1 7.5423 1.9961 -9.3795 18 1 5.5868 3.3383 -9.8846 19 6 2.9100 -1.9076 -0.6797 20 6 3.2733 -1.4142 0.7434 21 7 2.0378 -0.7198 1.1880 22 6 2.3081 0.1599 2.2236 23 7 2.1005 1.4554 2.0413 24 6 2.3436 2.3226 3.0104 25 6 2.8314 1.8607 4.2249 26 9 3.0957 2.7187 5.2343 27 6 3.0419 0.4976 4.3788 28 7 2.7724 -0.3145 3.3697 29 1 -0.3633 -1.0275 0.0198 30 1 -0.3633 0.5309 0.8799 31 1 -0.3634 0.4966 -0.8997 32 1 3.3040 0.9166 -1.6593 33 1 3.4706 1.8115 -4.1957 34 1 4.9060 0.8265 -3.8248 35 1 4.9695 0.3172 -9.6945 36 1 2.3281 -2.8280 -0.6320 37 1 3.8087 -2.0488 -1.2801 38 1 4.1129 -0.7201 0.7072 39 1 3.4974 -2.2570 1.3972 40 1 2.1681 3.3771 2.8573 41 1 3.4203 0.1045 5.3109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091932703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -4.782552 kcal Electronic energy + Delta-G solvation = -26341.161353 eV Core-core repulsion = 22297.910835 eV Total energy + Delta-G solvation = -4043.250518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.49361 -41.89035 -39.99903 -38.41989 -34.55824 -34.50282 -32.44930 -32.22965 -31.69690 -29.93084 -28.60497 -25.84154 -25.53738 -25.10008 -24.10052 -22.01872 -20.88031 -20.20073 -18.71010 -18.34844 -17.91384 -17.78987 -16.63745 -16.46213 -16.28911 -15.69933 -15.36648 -14.95966 -14.92497 -14.82088 -14.63962 -14.26577 -13.89339 -13.69886 -13.34323 -13.11593 -12.84497 -12.64612 -12.53792 -12.33156 -12.11507 -12.00222 -11.65071 -11.57637 -11.45261 -11.08618 -11.04265 -10.96737 -10.77047 -10.46527 -9.82706 -9.71197 -9.45128 -9.09943 -8.98373 -8.84858 -8.25783 -6.52167 -6.23743 -3.94358 0.16988 0.36641 2.56171 2.97270 3.01765 3.06347 3.20148 3.26829 3.31077 3.31411 3.44284 3.67583 3.95957 4.10866 4.15832 4.18376 4.36760 4.44004 4.76037 4.87226 4.95300 5.01704 5.10281 5.11617 5.19923 5.37297 5.39925 5.52996 5.59384 5.62749 5.75959 5.84589 5.87208 5.89616 5.94704 6.03889 6.09364 6.11540 6.59523 6.62688 7.45948 7.57888 7.62085 8.33484 8.54918 9.21854 10.83709 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.002203 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.452291 B =12708.029483 C =13641.493801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 H 0.100 0.900 4 C 0.139 3.861 5 H 0.108 0.892 6 N -0.733 5.733 7 C 0.534 3.466 8 O -0.513 6.513 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.135 4.135 20 C 0.054 3.946 21 N -0.438 5.438 22 C 0.482 3.518 23 N -0.524 5.524 24 C 0.154 3.846 25 C -0.040 4.040 26 F -0.122 7.122 27 C 0.154 3.846 28 N -0.499 5.499 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.396 0.604 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.181 0.819 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 2.016 27.934 28.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.048 4.048 3 H 0.117 0.883 4 C 0.033 3.967 5 H 0.126 0.874 6 N -0.388 5.388 7 C 0.321 3.679 8 O -0.387 6.387 9 C -0.305 4.305 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.174 4.174 20 C -0.071 4.071 21 N -0.158 5.158 22 C 0.127 3.873 23 N -0.242 5.242 24 C -0.015 4.015 25 C -0.066 4.066 26 F -0.101 7.101 27 C -0.016 4.016 28 N -0.215 5.215 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.198 0.802 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.184 -0.733 26.306 27.034 hybrid contribution 2.196 3.637 1.124 4.394 sum -3.988 2.904 27.430 27.870 Atomic orbital electron populations 1.21683 0.92245 1.02727 1.02223 1.22805 0.97567 0.98274 0.86165 0.88269 1.21757 0.94444 0.89736 0.90811 0.87422 1.46167 1.53207 1.30172 1.09243 1.20319 0.80665 0.85749 0.81196 1.90710 1.47277 1.28772 1.71902 1.23536 1.01334 1.01816 1.03765 1.85399 1.66270 1.37383 0.94203 1.22900 1.35284 1.13233 0.96899 0.90906 1.24994 0.96134 0.96346 0.96141 1.70023 1.42648 1.30240 1.07339 0.86117 0.79721 0.80572 0.79079 1.19638 1.20562 1.20551 1.23032 1.01563 0.98968 0.93856 1.23316 0.88103 0.98539 0.97131 1.61333 1.26287 1.22354 1.05865 1.21328 0.88830 0.85918 0.91223 1.68415 1.20980 1.02639 1.32169 1.23328 0.90513 1.01045 0.86610 1.19368 1.08137 0.90205 0.88890 1.91550 1.91912 1.68940 1.57706 1.23355 0.92373 0.87837 0.98055 1.68114 1.15116 1.38661 0.99641 0.91636 0.92471 0.91194 0.76945 0.89189 0.89287 0.92218 0.89143 0.89191 0.92646 0.88125 0.80165 0.80048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.32 37.15 0.35 -0.87 16 2 C 0.06 0.59 2.50 -66.64 -0.17 0.42 16 3 H 0.10 1.00 5.93 -51.93 -0.31 0.69 16 4 C 0.14 1.57 2.95 -66.57 -0.20 1.38 16 5 H 0.11 1.39 7.14 -51.93 -0.37 1.02 16 6 N -0.73 -9.28 5.08 -52.49 -0.27 -9.55 16 7 C 0.53 9.46 7.85 -10.99 -0.09 9.38 16 8 O -0.51 -11.07 15.54 5.56 0.09 -10.98 16 9 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 11 C -0.53 -15.06 9.50 30.94 0.29 -14.77 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 15 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.13 -1.39 6.79 -24.87 -0.17 -1.56 16 20 C 0.05 0.50 6.31 -1.90 -0.01 0.49 16 21 N -0.44 -4.38 5.00 -163.93 -0.82 -5.20 16 22 C 0.48 4.86 6.99 -322.72 -2.25 2.60 16 23 N -0.52 -4.82 8.14 -13.87 -0.11 -4.94 16 24 C 0.15 1.08 11.29 -17.15 -0.19 0.89 16 25 C -0.04 -0.28 7.38 -39.18 -0.29 -0.57 16 26 F -0.12 -0.84 17.29 2.25 0.04 -0.80 16 27 C 0.15 1.07 11.29 -17.15 -0.19 0.87 16 28 N -0.50 -4.74 10.21 -13.86 -0.14 -4.88 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 4.12 8.31 -40.82 -0.34 3.78 16 33 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 34 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.03 8.05 -51.93 -0.42 0.62 16 38 H 0.06 0.52 7.99 -51.93 -0.42 0.10 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.18 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -34.36 366.39 -10.19 -44.55 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.20 Total: 1.61 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.79 Total: -2.55 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.61 Total: -49.77 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.04 Total: -0.80 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.36 -10.19 -44.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091932703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.763 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds