Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.90730 * 2 1 4 4 C 1.53998 * 109.91619 * 238.89481 * 2 1 3 5 5 H 1.09002 * 110.30791 * 358.14116 * 4 2 1 6 6 N 1.46498 * 110.30714 * 120.20971 * 4 2 1 7 7 C 1.34784 * 120.00190 * 203.61204 * 6 4 2 8 8 O 1.21282 * 119.99463 * 359.97438 * 7 6 4 9 9 C 1.50693 * 120.00153 * 180.02562 * 7 6 4 10 10 S 1.80999 * 109.47046 * 180.02562 * 9 7 6 11 11 C 1.76206 * 100.00186 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99646 * 0.02562 * 11 10 9 13 13 C 1.38790 * 120.00059 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00475 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00128 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46929 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47460 * 119.99544 * 15 13 11 18 18 H 1.48498 * 109.47449 * 240.00366 * 15 13 11 19 19 C 1.54601 * 105.14126 * 239.22386 * 4 2 1 20 20 C 1.54937 * 102.92036 * 338.04212 * 19 4 2 21 21 N 1.47901 * 110.08459 * 121.20899 * 2 1 3 22 22 C 1.38538 * 111.00218 * 265.28862 * 21 2 1 23 23 N 1.32457 * 119.18328 * 359.72749 * 22 21 2 24 24 C 1.32298 * 120.76375 * 179.76281 * 23 22 21 25 25 C 1.38786 * 119.16866 * 0.50152 * 24 23 22 26 26 F 1.35096 * 120.74692 * 179.73255 * 25 24 23 27 27 C 1.38784 * 118.50776 * 359.75273 * 25 24 23 28 28 N 1.32302 * 119.16642 * 359.97438 * 27 25 24 29 29 H 1.08999 * 109.47173 * 181.10582 * 1 2 3 30 30 H 1.09002 * 109.47018 * 301.10391 * 1 2 3 31 31 H 1.08999 * 109.47315 * 61.10321 * 1 2 3 32 32 H 0.97000 * 120.00268 * 23.60943 * 6 4 2 33 33 H 1.09004 * 109.47307 * 299.99818 * 9 7 6 34 34 H 1.08996 * 109.47708 * 59.99753 * 9 7 6 35 35 H 0.96991 * 120.00213 * 180.02562 * 14 13 11 36 36 H 1.08995 * 110.71966 * 96.39982 * 19 4 2 37 37 H 1.09000 * 110.72382 * 219.68278 * 19 4 2 38 38 H 1.08993 * 110.66829 * 278.97895 * 20 19 4 39 39 H 1.09004 * 110.66466 * 155.84641 * 20 19 4 40 40 H 1.07997 * 120.41922 * 180.27898 * 24 23 22 41 41 H 1.08002 * 120.41882 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0545 -0.7480 -1.2397 5 1 1.2228 -1.1399 -1.8251 6 7 2.8777 0.1433 -2.0607 7 6 3.0426 -0.1110 -3.3741 8 8 2.5098 -1.0781 -3.8759 9 6 3.8898 0.8055 -4.2185 10 16 3.9155 0.2018 -5.9246 11 6 4.9453 1.4242 -6.6663 12 1 5.3441 2.2298 -6.0677 13 6 5.2447 1.3512 -8.0196 14 7 4.7599 0.3685 -8.7489 15 14 6.3370 2.6467 -8.8057 16 1 6.7498 3.6361 -7.7780 17 1 7.5423 1.9961 -9.3795 18 1 5.5868 3.3383 -9.8846 19 6 2.9100 -1.9076 -0.6797 20 6 3.2733 -1.4142 0.7434 21 7 2.0378 -0.7198 1.1880 22 6 2.3081 0.1599 2.2236 23 7 2.1005 1.4554 2.0413 24 6 2.3436 2.3226 3.0104 25 6 2.8314 1.8607 4.2249 26 9 3.0957 2.7187 5.2343 27 6 3.0419 0.4976 4.3788 28 7 2.7724 -0.3145 3.3697 29 1 -0.3633 -1.0275 0.0198 30 1 -0.3633 0.5309 0.8799 31 1 -0.3634 0.4966 -0.8997 32 1 3.3040 0.9166 -1.6593 33 1 3.4706 1.8115 -4.1957 34 1 4.9060 0.8265 -3.8248 35 1 4.9695 0.3172 -9.6945 36 1 2.3281 -2.8280 -0.6320 37 1 3.8087 -2.0488 -1.2801 38 1 4.1129 -0.7201 0.7072 39 1 3.4974 -2.2570 1.3972 40 1 2.1681 3.3771 2.8573 41 1 3.4203 0.1045 5.3109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091932703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = -27.495817 kcal Electronic energy + Delta-G solvation = -26342.146274 eV Core-core repulsion = 22297.910835 eV Total energy + Delta-G solvation = -4044.235439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.03473 -42.55808 -41.04069 -39.55345 -35.64435 -35.10849 -34.57966 -33.17707 -32.47570 -31.04561 -29.68663 -27.67935 -26.51320 -25.90495 -24.76590 -22.92215 -21.74505 -21.42685 -19.83667 -19.34038 -18.97309 -18.49306 -17.80348 -17.42871 -17.20982 -16.87719 -16.63029 -16.11722 -16.07579 -15.93899 -15.54230 -15.36108 -14.92162 -14.73846 -14.42906 -14.24091 -14.00184 -13.78304 -13.61922 -13.20344 -13.15023 -12.98108 -12.91210 -12.77422 -12.65413 -12.53744 -12.40607 -12.19968 -11.79409 -11.69376 -11.15561 -11.14399 -10.92763 -10.31219 -10.26511 -10.15600 -9.52942 -8.65460 -8.34493 -6.11953 -0.42984 -0.17626 1.26454 1.41476 1.46536 1.57498 1.59570 1.89543 2.25468 2.29327 2.43589 2.76782 2.86182 2.99796 3.18803 3.32445 3.55706 3.58625 3.67013 3.74554 3.93782 3.96474 4.06454 4.15239 4.30319 4.41461 4.51417 4.51512 4.57870 4.67738 4.77366 4.88389 4.94379 5.01450 5.14388 5.17976 5.24724 5.42683 5.43356 5.55676 5.96529 6.20441 6.43537 6.83639 7.07223 7.21132 8.74825 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.002203 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.452291 B =12708.029483 C =13641.493801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.071 3.929 3 H 0.101 0.899 4 C 0.137 3.863 5 H 0.092 0.908 6 N -0.707 5.707 7 C 0.540 3.460 8 O -0.557 6.557 9 C -0.130 4.130 10 S -0.147 6.147 11 C -0.545 4.545 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.131 4.131 20 C 0.063 3.937 21 N -0.444 5.444 22 C 0.467 3.533 23 N -0.537 5.537 24 C 0.152 3.848 25 C -0.035 4.035 26 F -0.121 7.121 27 C 0.153 3.847 28 N -0.517 5.517 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.412 0.588 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.208 0.792 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 3.953 30.097 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.037 4.037 3 H 0.119 0.881 4 C 0.031 3.969 5 H 0.110 0.890 6 N -0.362 5.362 7 C 0.326 3.674 8 O -0.434 6.434 9 C -0.282 4.282 10 S 0.080 5.920 11 C -0.693 4.693 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.181 1.181 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.170 4.170 20 C -0.062 4.062 21 N -0.165 5.165 22 C 0.111 3.889 23 N -0.256 5.256 24 C -0.016 4.016 25 C -0.060 4.060 26 F -0.099 7.099 27 C -0.015 4.015 28 N -0.234 5.234 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.248 0.752 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.224 0.776 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.330 1.236 28.544 29.064 hybrid contribution 1.896 3.060 0.660 3.660 sum -3.434 4.296 29.204 29.718 Atomic orbital electron populations 1.21642 0.91845 1.02701 1.02265 1.22658 0.97738 0.97957 0.85378 0.88099 1.21842 0.93969 0.90111 0.90952 0.88985 1.45879 1.52273 1.30475 1.07525 1.19990 0.80153 0.84832 0.82436 1.90703 1.49170 1.30514 1.73062 1.23375 1.03183 1.02623 0.98992 1.85561 1.66772 1.39243 1.00451 1.23226 1.35216 1.13303 0.97520 0.90001 1.26113 0.97605 0.98699 0.96771 1.70182 1.44303 1.32473 1.07768 0.84916 0.77417 0.77550 0.78127 1.18079 1.19976 1.19968 1.22955 1.00837 0.98775 0.94406 1.23241 0.87996 0.98733 0.96247 1.61344 1.26616 1.22687 1.05819 1.21372 0.89770 0.86313 0.91399 1.68413 1.21581 1.02518 1.33052 1.23778 0.89634 1.01957 0.86248 1.19371 1.07606 0.90233 0.88819 1.91561 1.91839 1.68897 1.57640 1.23832 0.91454 0.87861 0.98392 1.68129 1.15853 1.39451 1.00001 0.91748 0.92372 0.91107 0.75159 0.87278 0.87348 0.92007 0.88657 0.90357 0.92573 0.87381 0.77572 0.77246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.32 71.98 0.67 -1.56 16 2 C 0.07 1.30 2.50 45.06 0.11 1.42 16 3 H 0.10 1.85 5.93 -2.39 -0.01 1.84 16 4 C 0.14 3.02 2.95 45.87 0.14 3.15 16 5 H 0.09 2.39 7.14 -2.39 -0.02 2.38 16 6 N -0.71 -17.10 5.08 -438.36 -2.23 -19.33 16 7 C 0.54 18.95 7.85 87.65 0.69 19.64 16 8 O -0.56 -24.59 15.54 -3.04 -0.05 -24.64 16 9 C -0.13 -5.00 6.16 71.23 0.44 -4.57 16 10 S -0.15 -8.04 20.57 -56.49 -1.16 -9.21 16 11 C -0.54 -30.75 9.50 67.95 0.65 -30.10 16 12 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 13 C 0.01 0.73 5.49 84.85 0.47 1.19 16 14 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 15 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 C -0.13 -2.62 6.79 31.80 0.22 -2.40 16 20 C 0.06 1.09 6.31 86.65 0.55 1.64 16 21 N -0.44 -8.31 5.00 -672.57 -3.36 -11.67 16 22 C 0.47 8.64 6.99 261.46 1.83 10.47 16 23 N -0.54 -8.84 8.14 -197.78 -1.61 -10.45 16 24 C 0.15 1.77 11.29 84.75 0.96 2.73 16 25 C -0.03 -0.39 7.38 22.53 0.17 -0.23 16 26 F -0.12 -1.36 17.29 44.97 0.78 -0.58 16 27 C 0.15 1.78 11.29 84.75 0.96 2.73 16 28 N -0.52 -8.90 10.21 -197.78 -2.02 -10.92 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.41 7.67 8.31 -92.71 -0.77 6.90 16 33 H 0.11 3.77 8.14 -2.39 -0.02 3.76 16 34 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 35 H 0.27 15.30 8.31 -92.72 -0.77 14.53 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 38 H 0.06 0.96 7.99 -2.39 -0.02 0.94 16 39 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.21 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -75.84 366.39 0.80 -75.04 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.30 Total: 17.60 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 7.83 Total: 4.11 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -8.93 Total: -107.62 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.78 Total: -0.58 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.21 kcal Total: -75.84 0.80 -75.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091932703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.545 kcal (2) G-P(sol) polarization free energy of solvation -75.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds