Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48504 * 109.47094 * 240.00026 * 3 2 1 5 5 H 1.48498 * 109.47550 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47268 * 120.00066 * 3 2 1 7 7 C 1.38810 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00680 * 197.66227 * 7 2 1 9 9 N 1.36945 * 119.99763 * 17.66345 * 7 2 1 10 10 C 1.44698 * 116.97832 * 23.43218 * 9 7 2 11 11 C 1.51860 * 114.49252 * 157.66074 * 10 9 7 12 12 N 1.46468 * 110.96785 * 28.73285 * 11 10 9 13 13 C 1.34780 * 120.91822 * 128.03230 * 12 11 10 14 14 O 1.21270 * 120.00238 * 187.55170 * 13 12 11 15 15 C 1.50704 * 119.99628 * 7.55511 * 13 12 11 16 16 H 1.08995 * 115.55094 * 325.72124 * 15 13 12 17 17 C 1.53001 * 117.49787 * 111.38819 * 15 13 12 18 18 C 1.52990 * 59.99854 * 107.49057 * 17 15 13 19 19 C 1.52991 * 138.59199 * 130.89322 * 18 17 15 20 20 C 1.53001 * 60.00308 * 130.89252 * 19 18 17 21 21 C 1.46858 * 118.16704 * 308.06165 * 12 11 10 22 22 H 1.09007 * 110.07583 * 300.50741 * 21 12 11 23 23 C 1.53835 * 109.42628 * 179.70725 * 21 12 11 24 24 S 1.82879 * 105.26700 * 267.68371 * 23 21 12 25 25 O 1.42100 * 109.34810 * 245.35075 * 24 23 21 26 26 O 1.42101 * 109.34390 * 112.16258 * 24 23 21 27 27 C 1.83201 * 97.05127 * 358.75882 * 24 23 21 28 28 C 1.45100 * 116.72135 * 203.38262 * 9 7 2 29 29 H 1.09000 * 109.80711 * 332.43924 * 28 9 7 30 30 H 0.97004 * 119.99340 * 0.02562 * 1 2 3 31 31 H 1.08998 * 108.42749 * 36.37529 * 10 9 7 32 32 H 1.09006 * 108.47189 * 278.97322 * 10 9 7 33 33 H 1.08999 * 109.17931 * 268.35126 * 11 10 9 34 34 H 1.09002 * 109.13719 * 149.09406 * 11 10 9 35 35 H 1.09004 * 117.50317 * 214.97608 * 17 15 13 36 36 H 1.09001 * 117.49960 * 359.97438 * 17 15 13 37 37 H 1.09000 * 117.50348 * 238.38615 * 19 18 17 38 38 H 1.09003 * 117.49670 * 23.40585 * 19 18 17 39 39 H 1.08999 * 117.50489 * 252.51650 * 20 19 18 40 40 H 1.08999 * 117.49772 * 107.48508 * 20 19 18 41 41 H 1.09004 * 110.28171 * 148.73760 * 23 21 12 42 42 H 1.09001 * 110.28778 * 26.63401 * 23 21 12 43 43 H 1.09000 * 110.72456 * 218.83770 * 27 24 23 44 44 H 1.08996 * 110.88282 * 95.61999 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0521 -1.2241 0.2843 9 7 1.3740 -2.3603 -0.3588 10 6 0.2032 -2.2324 -1.1995 11 6 -0.1429 -3.4812 -1.9911 12 7 0.3009 -4.6872 -1.2882 13 6 -0.5494 -5.7073 -1.0585 14 8 -0.2067 -6.6365 -0.3585 15 6 -1.9260 -5.6934 -1.6715 16 1 -2.3879 -4.7108 -1.7676 17 6 -2.2239 -6.7237 -2.7627 18 6 -2.8444 -6.8800 -1.3730 19 6 -4.2185 -7.1398 -0.7525 20 6 -3.0091 -7.9633 -0.3052 21 6 1.6978 -4.7538 -0.8400 22 1 2.3695 -4.6622 -1.6937 23 6 1.9423 -6.0936 -0.1247 24 16 1.6294 -5.7584 1.6457 25 8 2.8397 -5.9100 2.3747 26 8 0.4609 -6.4545 2.0572 27 6 1.2444 -3.9757 1.4725 28 6 1.9416 -3.5986 0.1409 29 1 3.0117 -3.4742 0.3063 30 1 -0.4849 0.8401 -0.0004 31 1 0.3697 -1.4140 -1.8999 32 1 -0.6482 -1.9755 -0.5691 33 1 0.3446 -3.4345 -2.9649 34 1 -1.2227 -3.5264 -2.1332 35 1 -2.8822 -6.4191 -3.5764 36 1 -1.4241 -7.4114 -3.0374 37 1 -4.6056 -6.3953 -0.0570 38 1 -4.9646 -7.6373 -1.3722 39 1 -2.9594 -9.0024 -0.6305 40 1 -2.6004 -7.7604 0.6847 41 1 2.9726 -6.4178 -0.2715 42 1 1.2508 -6.8509 -0.4939 43 1 1.6651 -3.4078 2.3023 44 1 0.1685 -3.8155 1.4035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094663774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = 44.691255 kcal Electronic energy + Delta-G solvation = -29821.175030 eV Core-core repulsion = 25871.237411 eV Total energy + Delta-G solvation = -3949.937618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.76460 -38.37219 -37.12737 -36.31077 -35.34379 -34.45532 -33.93212 -32.38776 -31.14574 -28.84092 -28.03231 -25.31768 -24.21777 -23.46049 -22.37752 -22.22496 -20.45773 -19.20896 -18.38989 -18.32541 -17.39238 -16.55345 -16.36577 -16.20176 -15.41466 -15.36600 -15.04294 -14.97067 -14.67609 -14.39307 -14.18197 -13.73159 -13.61927 -13.57767 -12.99880 -12.61553 -12.39554 -12.28886 -11.90211 -11.64938 -11.49118 -11.45669 -11.37580 -11.33791 -11.24402 -10.92993 -10.76623 -10.58702 -10.42927 -10.27933 -10.19464 -10.06682 -9.97876 -9.93146 -9.64956 -8.83287 -8.69697 -8.33122 -7.02327 -5.94269 -3.48090 0.72081 2.45689 2.94969 3.17511 3.26804 3.32850 3.34082 3.68709 3.74250 4.11863 4.25764 4.30060 4.54071 4.70996 4.75718 4.78407 4.98389 5.04819 5.14489 5.18601 5.29511 5.40349 5.47288 5.49398 5.57699 5.60694 5.62050 5.64222 5.67088 5.79857 5.86101 5.87818 5.99679 6.03520 6.07734 6.27701 6.30988 6.56085 6.77014 7.05464 7.42784 7.57148 7.63126 8.19226 8.31697 8.99383 9.60777 9.94897 11.03601 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.004941 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.298080 B = 5665.797819 C = 7090.984190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.011 3.989 3 Si 0.908 3.092 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.277 4.277 8 H 0.074 0.926 9 N -0.566 5.566 10 C 0.162 3.838 11 C 0.088 3.912 12 N -0.593 5.593 13 C 0.540 3.460 14 O -0.515 6.515 15 C -0.142 4.142 16 H 0.128 0.872 17 C -0.100 4.100 18 C -0.198 4.198 19 C -0.132 4.132 20 C -0.112 4.112 21 C 0.151 3.849 22 H 0.101 0.899 23 C -0.652 4.652 24 S 2.377 3.623 25 O -0.966 6.966 26 O -0.933 6.933 27 C -0.590 4.590 28 C 0.180 3.820 29 H 0.088 0.912 30 H 0.257 0.743 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.220 0.780 43 H 0.129 0.871 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -10.764 -7.322 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.406 4.406 8 H 0.092 0.908 9 N -0.287 5.287 10 C 0.037 3.963 11 C -0.035 4.035 12 N -0.325 5.325 13 C 0.330 3.670 14 O -0.396 6.396 15 C -0.162 4.162 16 H 0.146 0.854 17 C -0.137 4.137 18 C -0.199 4.199 19 C -0.169 4.169 20 C -0.149 4.149 21 C 0.046 3.954 22 H 0.119 0.881 23 C -0.780 4.780 24 S 2.562 3.438 25 O -0.963 6.963 26 O -0.930 6.930 27 C -0.724 4.724 28 C 0.068 3.932 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.234 0.766 43 H 0.147 0.853 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.504 -11.690 -6.196 13.977 hybrid contribution 0.489 1.873 -0.644 2.040 sum -4.016 -9.817 -6.840 12.621 Atomic orbital electron populations 1.70056 1.05262 1.25931 1.53035 1.25025 0.95330 0.98561 0.99977 0.86288 0.78915 0.82788 0.78322 1.20838 1.21528 1.20682 1.19315 0.93490 0.84658 1.43154 0.90795 1.42858 1.30966 1.00511 1.54363 1.20557 0.91195 0.91331 0.93260 1.22286 1.00195 0.84998 0.95984 1.47681 1.10021 1.17375 1.57375 1.19827 0.85579 0.81535 0.80009 1.90203 1.73445 1.37478 1.38438 1.22035 0.93747 0.96238 1.04199 0.85408 1.22628 1.01608 0.99200 0.90279 1.21122 0.99946 1.00637 0.98196 1.22757 0.89543 1.02633 1.01930 1.22646 0.99147 0.94802 0.98291 1.21672 0.82777 0.92244 0.98717 0.88112 1.32274 1.13213 1.08213 1.24252 1.09244 0.75446 0.80347 0.78791 1.93536 1.46868 1.86244 1.69642 1.93555 1.48088 1.71235 1.80133 1.31341 1.11209 1.20576 1.09308 1.21049 0.97526 0.87327 0.87332 0.89430 0.93293 0.91984 0.91936 0.92069 0.89743 0.87754 0.88237 0.88506 0.88598 0.88794 0.87460 0.86168 0.76597 0.85300 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.46 10.59 55.49 0.59 -22.87 16 2 C 0.01 0.27 4.85 -17.43 -0.08 0.19 16 3 Si 0.91 20.13 29.59 -169.99 -5.03 15.10 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.28 -6.78 9.33 -15.06 -0.14 -6.92 16 8 H 0.07 1.78 7.71 -52.49 -0.40 1.38 16 9 N -0.57 -12.27 2.80 -167.30 -0.47 -12.74 16 10 C 0.16 3.27 4.91 -5.58 -0.03 3.25 16 11 C 0.09 1.34 6.40 -4.64 -0.03 1.31 16 12 N -0.59 -9.17 2.79 -165.77 -0.46 -9.63 16 13 C 0.54 8.35 7.33 -10.98 -0.08 8.27 16 14 O -0.51 -8.90 9.62 -16.17 -0.16 -9.05 16 15 C -0.14 -1.81 5.33 -91.77 -0.49 -2.30 16 16 H 0.13 1.51 6.31 -51.93 -0.33 1.18 16 17 C -0.10 -1.03 10.23 -26.74 -0.27 -1.31 16 18 C -0.20 -2.42 5.05 -154.52 -0.78 -3.20 16 19 C -0.13 -1.37 10.53 -26.74 -0.28 -1.66 16 20 C -0.11 -1.37 10.16 -26.73 -0.27 -1.64 16 21 C 0.15 2.38 3.41 -67.05 -0.23 2.15 16 22 H 0.10 1.42 8.14 -51.92 -0.42 1.00 16 23 C -0.65 -9.86 6.09 37.59 0.23 -9.64 16 24 S 2.38 42.94 5.82 -107.50 -0.63 42.32 16 25 O -0.97 -19.63 18.14 -57.71 -1.05 -20.68 16 26 O -0.93 -19.45 16.28 -66.33 -1.08 -20.53 16 27 C -0.59 -11.12 6.77 38.19 0.26 -10.86 16 28 C 0.18 3.35 2.82 -67.39 -0.19 3.16 16 29 H 0.09 1.56 7.80 -51.93 -0.41 1.16 16 30 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.06 1.36 7.24 -51.93 -0.38 0.99 16 32 H 0.06 1.45 6.79 -51.93 -0.35 1.10 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.09 5.49 -51.93 -0.29 0.80 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.22 3.43 4.20 -58.78 -0.25 3.18 16 43 H 0.13 2.43 8.14 -51.93 -0.42 2.01 16 44 H 0.13 2.58 8.14 -51.93 -0.42 2.15 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -31.83 353.62 -11.53 -43.36 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.18 Total: 8.59 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.39 Total: -19.20 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.34 Total: -45.25 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -2.28 Total: -50.26 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Atomic # 16 Polarization: 42.94 SS G_CDS: -0.63 Total: 42.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.83 -11.53 -43.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094663774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.056 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds