Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48504 * 109.47094 * 240.00026 * 3 2 1 5 5 H 1.48498 * 109.47550 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47268 * 120.00066 * 3 2 1 7 7 C 1.38810 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00680 * 197.66227 * 7 2 1 9 9 N 1.36945 * 119.99763 * 17.66345 * 7 2 1 10 10 C 1.44698 * 116.97832 * 23.43218 * 9 7 2 11 11 C 1.51860 * 114.49252 * 157.66074 * 10 9 7 12 12 N 1.46468 * 110.96785 * 28.73285 * 11 10 9 13 13 C 1.34780 * 120.91822 * 128.03230 * 12 11 10 14 14 O 1.21270 * 120.00238 * 187.55170 * 13 12 11 15 15 C 1.50704 * 119.99628 * 7.55511 * 13 12 11 16 16 H 1.08995 * 115.55094 * 325.72124 * 15 13 12 17 17 C 1.53001 * 117.49787 * 111.38819 * 15 13 12 18 18 C 1.52990 * 59.99854 * 107.49057 * 17 15 13 19 19 C 1.52991 * 138.59199 * 130.89322 * 18 17 15 20 20 C 1.53001 * 60.00308 * 130.89252 * 19 18 17 21 21 C 1.46858 * 118.16704 * 308.06165 * 12 11 10 22 22 H 1.09007 * 110.07583 * 300.50741 * 21 12 11 23 23 C 1.53835 * 109.42628 * 179.70725 * 21 12 11 24 24 S 1.82879 * 105.26700 * 267.68371 * 23 21 12 25 25 O 1.42100 * 109.34810 * 245.35075 * 24 23 21 26 26 O 1.42101 * 109.34390 * 112.16258 * 24 23 21 27 27 C 1.83201 * 97.05127 * 358.75882 * 24 23 21 28 28 C 1.45100 * 116.72135 * 203.38262 * 9 7 2 29 29 H 1.09000 * 109.80711 * 332.43924 * 28 9 7 30 30 H 0.97004 * 119.99340 * 0.02562 * 1 2 3 31 31 H 1.08998 * 108.42749 * 36.37529 * 10 9 7 32 32 H 1.09006 * 108.47189 * 278.97322 * 10 9 7 33 33 H 1.08999 * 109.17931 * 268.35126 * 11 10 9 34 34 H 1.09002 * 109.13719 * 149.09406 * 11 10 9 35 35 H 1.09004 * 117.50317 * 214.97608 * 17 15 13 36 36 H 1.09001 * 117.49960 * 359.97438 * 17 15 13 37 37 H 1.09000 * 117.50348 * 238.38615 * 19 18 17 38 38 H 1.09003 * 117.49670 * 23.40585 * 19 18 17 39 39 H 1.08999 * 117.50489 * 252.51650 * 20 19 18 40 40 H 1.08999 * 117.49772 * 107.48508 * 20 19 18 41 41 H 1.09004 * 110.28171 * 148.73760 * 23 21 12 42 42 H 1.09001 * 110.28778 * 26.63401 * 23 21 12 43 43 H 1.09000 * 110.72456 * 218.83770 * 27 24 23 44 44 H 1.08996 * 110.88282 * 95.61999 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0521 -1.2241 0.2843 9 7 1.3740 -2.3603 -0.3588 10 6 0.2032 -2.2324 -1.1995 11 6 -0.1429 -3.4812 -1.9911 12 7 0.3009 -4.6872 -1.2882 13 6 -0.5494 -5.7073 -1.0585 14 8 -0.2067 -6.6365 -0.3585 15 6 -1.9260 -5.6934 -1.6715 16 1 -2.3879 -4.7108 -1.7676 17 6 -2.2239 -6.7237 -2.7627 18 6 -2.8444 -6.8800 -1.3730 19 6 -4.2185 -7.1398 -0.7525 20 6 -3.0091 -7.9633 -0.3052 21 6 1.6978 -4.7538 -0.8400 22 1 2.3695 -4.6622 -1.6937 23 6 1.9423 -6.0936 -0.1247 24 16 1.6294 -5.7584 1.6457 25 8 2.8397 -5.9100 2.3747 26 8 0.4609 -6.4545 2.0572 27 6 1.2444 -3.9757 1.4725 28 6 1.9416 -3.5986 0.1409 29 1 3.0117 -3.4742 0.3063 30 1 -0.4849 0.8401 -0.0004 31 1 0.3697 -1.4140 -1.8999 32 1 -0.6482 -1.9755 -0.5691 33 1 0.3446 -3.4345 -2.9649 34 1 -1.2227 -3.5264 -2.1332 35 1 -2.8822 -6.4191 -3.5764 36 1 -1.4241 -7.4114 -3.0374 37 1 -4.6056 -6.3953 -0.0570 38 1 -4.9646 -7.6373 -1.3722 39 1 -2.9594 -9.0024 -0.6305 40 1 -2.6004 -7.7604 0.6847 41 1 2.9726 -6.4178 -0.2715 42 1 1.2508 -6.8509 -0.4939 43 1 1.6651 -3.4078 2.3023 44 1 0.1685 -3.8155 1.4035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094663774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = 23.863032 kcal Electronic energy + Delta-G solvation = -29822.078209 eV Core-core repulsion = 25871.237411 eV Total energy + Delta-G solvation = -3950.840798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.99578 -39.55415 -38.34963 -37.86432 -36.93018 -35.97146 -35.27984 -33.38093 -32.86332 -30.23486 -29.59618 -26.75959 -25.63932 -24.80965 -23.66901 -23.20854 -21.59633 -20.41025 -19.86200 -19.63832 -18.82310 -18.02891 -17.74264 -17.59999 -16.78889 -16.69980 -16.64361 -16.06254 -15.84326 -15.73241 -15.40276 -15.32456 -15.13804 -14.95619 -14.37071 -14.13255 -13.70699 -13.42780 -13.15819 -13.15434 -13.03864 -12.95823 -12.77867 -12.64926 -12.54327 -12.34081 -12.29291 -12.25034 -12.08321 -11.85864 -11.61562 -11.18743 -11.08993 -10.90793 -10.83582 -10.59154 -10.00544 -9.65326 -8.81339 -7.81511 -5.38983 -0.75756 1.31229 1.48592 1.50506 1.56106 1.73095 1.78928 2.48072 2.68867 2.77772 2.82955 3.18662 3.25313 3.29359 3.38757 3.53135 3.63863 3.78239 3.86518 3.93208 4.04567 4.07517 4.20833 4.32364 4.49946 4.50838 4.56928 4.60629 4.69630 4.76044 4.81310 4.85565 4.87750 4.91813 5.04087 5.10358 5.11444 5.30509 5.35405 5.61592 5.68047 5.79237 6.32552 6.34036 7.11274 7.15014 7.86513 8.10833 9.11585 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.004941 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.298080 B = 5665.797819 C = 7090.984190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.036 4.036 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.283 4.283 8 H 0.075 0.925 9 N -0.576 5.576 10 C 0.171 3.829 11 C 0.100 3.900 12 N -0.595 5.595 13 C 0.535 3.465 14 O -0.537 6.537 15 C -0.161 4.161 16 H 0.137 0.863 17 C -0.070 4.070 18 C -0.220 4.220 19 C -0.113 4.113 20 C -0.129 4.129 21 C 0.153 3.847 22 H 0.132 0.868 23 C -0.623 4.623 24 S 2.387 3.613 25 O -0.989 6.989 26 O -0.964 6.964 27 C -0.593 4.593 28 C 0.170 3.830 29 H 0.096 0.904 30 H 0.250 0.750 31 H 0.040 0.960 32 H 0.024 0.976 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.157 0.843 42 H 0.224 0.776 43 H 0.119 0.881 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 -12.103 -9.975 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.233 4.233 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.209 1.209 7 C -0.413 4.413 8 H 0.092 0.908 9 N -0.297 5.297 10 C 0.045 3.955 11 C -0.023 4.023 12 N -0.326 5.326 13 C 0.327 3.673 14 O -0.419 6.419 15 C -0.181 4.181 16 H 0.154 0.846 17 C -0.107 4.107 18 C -0.221 4.221 19 C -0.150 4.150 20 C -0.166 4.166 21 C 0.048 3.952 22 H 0.150 0.850 23 C -0.754 4.754 24 S 2.575 3.425 25 O -0.986 6.986 26 O -0.961 6.961 27 C -0.727 4.727 28 C 0.058 3.942 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.152 0.848 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.126 0.874 40 H 0.092 0.908 41 H 0.175 0.825 42 H 0.238 0.762 43 H 0.137 0.863 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.298 -13.032 -8.820 16.313 hybrid contribution 0.449 2.240 0.247 2.298 sum -3.849 -10.792 -8.573 14.310 Atomic orbital electron populations 1.70234 1.06282 1.25811 1.54673 1.25642 0.95946 1.01033 1.00676 0.85431 0.77632 0.79624 0.78244 1.20044 1.22289 1.20876 1.19626 0.93745 0.85901 1.42015 0.90763 1.43006 1.31074 1.00788 1.54826 1.20307 0.89255 0.93570 0.92372 1.22142 1.02033 0.82424 0.95709 1.47719 1.09972 1.17481 1.57419 1.20316 0.86397 0.81061 0.79505 1.90195 1.74095 1.38340 1.39270 1.22088 0.92289 0.97347 1.06381 0.84587 1.22772 1.01176 0.96968 0.89735 1.21387 1.00875 1.00172 0.99646 1.22829 0.89223 1.01594 1.01358 1.22578 1.01029 0.95907 0.97053 1.21709 0.83858 0.90794 0.98844 0.85035 1.32076 1.15750 1.08052 1.19483 1.08777 0.74280 0.79049 0.80419 1.93500 1.47263 1.86172 1.71678 1.93516 1.49351 1.71390 1.81873 1.31226 1.09822 1.22054 1.09572 1.21311 0.97668 0.87514 0.87687 0.88594 0.94039 0.94222 0.95822 0.89287 0.87416 0.84767 0.87904 0.88964 0.85899 0.87425 0.90762 0.82548 0.76159 0.86280 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.75 10.59 21.65 0.23 -49.52 16 2 C -0.04 -1.84 4.85 84.86 0.41 -1.43 16 3 Si 0.96 41.88 29.59 68.60 2.03 43.91 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.28 -13.96 9.33 84.03 0.78 -13.18 16 8 H 0.07 3.58 7.71 -2.91 -0.02 3.56 16 9 N -0.58 -25.00 2.80 -683.22 -1.92 -26.92 16 10 C 0.17 6.92 4.91 86.34 0.42 7.34 16 11 C 0.10 2.80 6.40 86.01 0.55 3.35 16 12 N -0.60 -17.10 2.79 -796.75 -2.23 -19.32 16 13 C 0.54 15.57 7.33 87.66 0.64 16.21 16 14 O -0.54 -17.88 9.62 17.79 0.17 -17.71 16 15 C -0.16 -3.73 5.33 -11.54 -0.06 -3.79 16 16 H 0.14 2.89 6.31 -2.39 -0.02 2.87 16 17 C -0.07 -1.17 10.23 30.59 0.31 -0.86 16 18 C -0.22 -4.88 5.05 -52.19 -0.26 -5.15 16 19 C -0.11 -2.14 10.53 30.59 0.32 -1.82 16 20 C -0.13 -3.06 10.16 30.60 0.31 -2.75 16 21 C 0.15 4.42 3.41 45.37 0.15 4.57 16 22 H 0.13 3.13 8.14 -2.38 -0.02 3.11 16 23 C -0.62 -17.19 6.09 72.26 0.44 -16.75 16 24 S 2.39 85.83 5.82 -56.49 -0.33 85.50 16 25 O -0.99 -39.88 18.14 -127.49 -2.31 -42.19 16 26 O -0.96 -40.92 16.28 -119.24 -1.94 -42.86 16 27 C -0.59 -22.91 6.77 72.65 0.49 -22.41 16 28 C 0.17 6.20 2.82 46.09 0.13 6.33 16 29 H 0.10 3.31 7.80 -2.39 -0.02 3.30 16 30 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 31 H 0.04 1.76 7.24 -2.39 -0.02 1.74 16 32 H 0.02 1.15 6.79 -2.38 -0.02 1.13 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 34 H 0.11 2.54 5.49 -2.39 -0.01 2.52 16 35 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.16 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.22 6.40 4.20 -110.88 -0.47 5.93 16 43 H 0.12 4.72 8.14 -2.39 -0.02 4.70 16 44 H 0.11 4.57 8.14 -2.39 -0.02 4.55 16 Total: -1.00 -71.00 353.62 -1.08 -72.08 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.57 Total: 27.36 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 4.65 Total: -30.32 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.91 Total: -95.76 kcal Atomic # 8 Polarization: -98.67 SS G_CDS: -4.08 Total: -102.76 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 85.83 SS G_CDS: -0.33 Total: 85.50 kcal Total: -71.00 -1.08 -72.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094663774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.940 kcal (2) G-P(sol) polarization free energy of solvation -70.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds