Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00243 * 2 1 4 4 H 1.48500 * 109.47182 * 239.99962 * 3 2 1 5 5 H 1.48496 * 109.46846 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46977 * 119.99603 * 3 2 1 7 7 C 1.38816 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00457 * 185.19403 * 7 2 1 9 9 N 1.36939 * 119.99311 * 5.18581 * 7 2 1 10 10 C 1.44360 * 116.86924 * 34.81413 * 9 7 2 11 11 C 1.52236 * 114.57668 * 157.13032 * 10 9 7 12 12 N 1.46511 * 110.85969 * 28.24566 * 11 10 9 13 13 C 1.34775 * 120.99877 * 128.70536 * 12 11 10 14 14 O 1.21285 * 119.99559 * 173.86407 * 13 12 11 15 15 C 1.50703 * 120.00163 * 353.59091 * 13 12 11 16 16 H 1.08993 * 115.55154 * 34.41842 * 15 13 12 17 17 C 1.53002 * 117.49701 * 248.74512 * 15 13 12 18 18 C 1.52995 * 117.49610 * 180.08958 * 15 13 12 19 19 C 1.52991 * 138.58854 * 336.58840 * 18 15 13 20 20 C 1.52989 * 138.58411 * 238.38104 * 18 15 13 21 21 C 1.46853 * 117.99421 * 308.43335 * 12 11 10 22 22 H 1.08997 * 110.39294 * 300.69666 * 21 12 11 23 23 C 1.54558 * 109.25037 * 179.10535 * 21 12 11 24 24 S 1.83202 * 102.95094 * 283.47051 * 23 21 12 25 25 O 1.42098 * 109.34288 * 90.86077 * 24 23 21 26 26 O 1.42090 * 109.34278 * 224.03920 * 24 23 21 27 27 C 1.82814 * 97.07886 * 337.45317 * 24 23 21 28 28 C 1.45347 * 116.86719 * 214.82659 * 9 7 2 29 29 H 1.09010 * 108.89974 * 332.69199 * 28 9 7 30 30 H 0.96998 * 119.99516 * 0.02562 * 1 2 3 31 31 H 1.09002 * 108.45522 * 278.60651 * 10 9 7 32 32 H 1.08992 * 108.46168 * 36.12866 * 10 9 7 33 33 H 1.09003 * 109.31743 * 267.86902 * 11 10 9 34 34 H 1.08997 * 109.21962 * 148.56224 * 11 10 9 35 35 H 1.09002 * 117.50351 * 359.97438 * 17 15 13 36 36 H 1.08999 * 117.49720 * 145.02364 * 17 15 13 37 37 H 1.09000 * 117.50149 * 336.60426 * 19 18 15 38 38 H 1.09005 * 117.49926 * 121.62384 * 19 18 15 39 39 H 1.08997 * 117.50022 * 238.38123 * 20 18 15 40 40 H 1.09003 * 117.50318 * 23.40733 * 20 18 15 41 41 H 1.09006 * 110.72003 * 41.83506 * 23 21 12 42 42 H 1.08994 * 110.71773 * 165.10823 * 23 21 12 43 43 H 1.09000 * 110.25253 * 117.80756 * 27 24 23 44 44 H 1.08998 * 110.24858 * 239.82907 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2041 0.0852 9 7 1.3297 -2.3856 -0.1061 10 6 0.1493 -2.3868 -0.9372 11 6 -0.2506 -3.7568 -1.4670 12 7 0.1829 -4.8166 -0.5530 13 6 -0.6808 -5.7565 -0.1204 14 8 -0.2801 -6.6879 0.5451 15 6 -2.1453 -5.6469 -0.4586 16 1 -2.3715 -5.2179 -1.4347 17 6 -3.1143 -5.3469 0.6868 18 6 -3.0748 -6.7443 0.0634 19 6 -2.9865 -8.2022 0.5187 20 6 -4.0531 -7.7803 -0.4937 21 6 1.5883 -4.8273 -0.1271 22 1 2.2465 -4.9135 -0.9917 23 6 1.8174 -6.0074 0.8444 24 16 1.0795 -5.4013 2.4078 25 8 -0.2875 -5.7852 2.4630 26 8 1.9478 -5.7109 3.4891 27 6 1.1922 -3.6156 2.0327 28 6 1.8651 -3.5198 0.6285 29 1 2.9406 -3.3878 0.7471 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6808 -1.9824 -0.3580 32 1 0.3263 -1.7305 -1.7891 33 1 0.2101 -3.9149 -2.4421 34 1 -1.3346 -3.7978 -1.5737 35 1 -2.6926 -5.2292 1.6851 36 1 -3.9782 -4.7208 0.4641 37 1 -2.1491 -8.7948 0.1502 38 1 -3.3173 -8.4342 1.5311 39 1 -5.0856 -7.7347 -0.1475 40 1 -3.9174 -8.0953 -1.5284 41 1 1.3000 -6.9009 0.4947 42 1 2.8824 -6.2017 0.9706 43 1 0.1966 -3.1732 2.0005 44 1 1.8061 -3.1114 2.7791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094663776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = 40.543399 kcal Electronic energy + Delta-G solvation = -30193.275718 eV Core-core repulsion = 26243.158235 eV Total energy + Delta-G solvation = -3950.117483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.60265 -38.20922 -37.02272 -36.21094 -35.30376 -34.33274 -33.78626 -32.22760 -31.13581 -28.73529 -27.93850 -25.28858 -24.09628 -23.40285 -22.31098 -22.10491 -20.33743 -19.06441 -18.36409 -18.19046 -17.32298 -16.66426 -16.43552 -15.96499 -15.40764 -15.09688 -14.88192 -14.80056 -14.50350 -14.36929 -14.13827 -13.75858 -13.61260 -13.47835 -12.96295 -12.52990 -12.36458 -12.12563 -11.76613 -11.63167 -11.44210 -11.40149 -11.32994 -11.22753 -11.06931 -10.94827 -10.66542 -10.58095 -10.40298 -10.27239 -9.99792 -9.95910 -9.87431 -9.77418 -9.65039 -8.75333 -8.67073 -8.33478 -6.89645 -5.92170 -3.61435 0.72165 2.70824 3.01998 3.20642 3.25882 3.30971 3.31869 3.85720 3.93002 4.12838 4.29181 4.43779 4.63649 4.69654 4.90519 4.97210 5.01610 5.11827 5.20600 5.26137 5.33442 5.50706 5.53007 5.59626 5.65777 5.70975 5.73685 5.75875 5.85580 5.90822 5.92864 6.04063 6.07811 6.11504 6.25610 6.32834 6.37762 6.55959 6.74760 7.08997 7.50741 7.62846 7.68760 8.27603 8.48769 9.03340 9.59978 9.99245 11.02154 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.004907 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.651994 B = 5704.934053 C = 6813.014568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.020 3.980 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.281 4.281 8 H 0.069 0.931 9 N -0.568 5.568 10 C 0.160 3.840 11 C 0.089 3.911 12 N -0.606 5.606 13 C 0.548 3.452 14 O -0.519 6.519 15 C -0.137 4.137 16 H 0.121 0.879 17 C -0.094 4.094 18 C -0.194 4.194 19 C -0.110 4.110 20 C -0.137 4.137 21 C 0.143 3.857 22 H 0.103 0.897 23 C -0.616 4.616 24 S 2.379 3.621 25 O -0.923 6.923 26 O -0.970 6.970 27 C -0.603 4.603 28 C 0.191 3.809 29 H 0.085 0.915 30 H 0.258 0.742 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.196 0.804 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 -10.521 -3.811 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.737 3.263 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.411 4.411 8 H 0.086 0.914 9 N -0.288 5.288 10 C 0.034 3.966 11 C -0.034 4.034 12 N -0.339 5.339 13 C 0.338 3.662 14 O -0.398 6.398 15 C -0.158 4.158 16 H 0.138 0.862 17 C -0.131 4.131 18 C -0.195 4.195 19 C -0.147 4.147 20 C -0.174 4.174 21 C 0.037 3.963 22 H 0.121 0.879 23 C -0.745 4.745 24 S 2.564 3.436 25 O -0.920 6.920 26 O -0.967 6.967 27 C -0.737 4.737 28 C 0.079 3.921 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.212 0.788 42 H 0.138 0.862 43 H 0.151 0.849 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.327 -11.358 -2.700 12.450 hybrid contribution 0.820 1.753 -0.738 2.071 sum -3.507 -9.605 -3.438 10.787 Atomic orbital electron populations 1.69933 1.05333 1.25970 1.52723 1.25353 0.95455 0.98643 0.98662 0.86305 0.78927 0.82773 0.78333 1.20719 1.21451 1.20601 1.19212 0.90503 0.83285 1.48055 0.91362 1.42783 1.29426 1.06476 1.50117 1.20609 0.91274 0.89834 0.94865 1.22328 1.00278 0.88847 0.91940 1.47764 1.08963 1.28548 1.48634 1.19674 0.86879 0.81313 0.78314 1.90345 1.76435 1.34074 1.38901 1.21888 0.89561 1.03794 1.00571 0.86161 1.22751 0.98543 0.94144 0.97663 1.21074 1.02931 0.88720 1.06726 1.22494 0.99684 0.93618 0.98855 1.22747 0.95196 1.00380 0.99032 1.21961 0.83070 0.93001 0.98251 0.87917 1.31842 1.12616 1.10705 1.19337 1.09203 0.76527 0.80263 0.77656 1.93613 1.31388 1.80787 1.86221 1.93513 1.68223 1.83820 1.51181 1.31644 1.11487 1.21072 1.09494 1.21157 0.97663 0.87368 0.85939 0.89731 0.93186 0.91482 0.92550 0.92418 0.89803 0.86613 0.88108 0.88552 0.88751 0.88695 0.88963 0.78759 0.86188 0.84866 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.22 10.63 55.49 0.59 -22.63 16 2 C 0.02 0.49 5.15 -17.43 -0.09 0.40 16 3 Si 0.91 19.97 29.56 -169.99 -5.02 14.94 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.28 -6.80 9.16 -15.06 -0.14 -6.94 16 8 H 0.07 1.62 7.75 -52.49 -0.41 1.22 16 9 N -0.57 -12.21 2.78 -166.47 -0.46 -12.68 16 10 C 0.16 3.24 4.94 -5.57 -0.03 3.21 16 11 C 0.09 1.40 6.45 -4.43 -0.03 1.37 16 12 N -0.61 -9.70 2.78 -165.05 -0.46 -10.16 16 13 C 0.55 8.99 6.03 -10.98 -0.07 8.92 16 14 O -0.52 -9.21 8.83 -19.63 -0.17 -9.38 16 15 C -0.14 -1.97 5.13 -91.77 -0.47 -2.44 16 16 H 0.12 1.47 6.61 -51.93 -0.34 1.13 16 17 C -0.09 -1.34 10.24 -26.70 -0.27 -1.61 16 18 C -0.19 -2.65 5.06 -154.49 -0.78 -3.43 16 19 C -0.11 -1.41 10.16 -26.74 -0.27 -1.68 16 20 C -0.14 -1.47 10.53 -26.74 -0.28 -1.75 16 21 C 0.14 2.25 3.47 -66.64 -0.23 2.02 16 22 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 23 C -0.62 -9.26 6.16 37.98 0.23 -9.03 16 24 S 2.38 42.24 5.63 -107.50 -0.61 41.63 16 25 O -0.92 -18.29 13.55 -67.58 -0.92 -19.21 16 26 O -0.97 -19.71 18.14 -57.71 -1.05 -20.76 16 27 C -0.60 -11.08 6.89 38.77 0.27 -10.81 16 28 C 0.19 3.50 2.91 -66.66 -0.19 3.31 16 29 H 0.08 1.47 7.83 -51.92 -0.41 1.06 16 30 H 0.26 6.55 8.31 -40.82 -0.34 6.22 16 31 H 0.07 1.56 6.61 -51.93 -0.34 1.21 16 32 H 0.06 1.23 7.63 -51.93 -0.40 0.84 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.14 5.55 -51.93 -0.29 0.86 16 35 H 0.12 1.92 7.58 -51.93 -0.39 1.52 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.20 3.04 4.99 -56.67 -0.28 2.76 16 42 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.13 2.70 8.08 -51.93 -0.42 2.28 16 44 H 0.13 2.23 8.14 -51.93 -0.42 1.80 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -30.89 349.72 -11.40 -42.29 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.22 Total: 9.14 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -2.35 Total: -18.47 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.33 Total: -45.46 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -2.14 Total: -49.34 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 42.24 SS G_CDS: -0.61 Total: 41.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.89 -11.40 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094663776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.833 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds