Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38578 * 119.99780 * 2 1 4 4 C 1.39464 * 120.51343 * 190.36090 * 3 2 1 5 5 C 1.38468 * 118.31146 * 179.97438 * 4 3 2 6 6 F 1.35097 * 120.43122 * 179.97438 * 5 4 3 7 7 N 1.32790 * 119.13698 * 359.97438 * 5 4 3 8 8 C 1.31762 * 120.96465 * 0.02562 * 7 5 4 9 9 N 1.31761 * 121.85695 * 359.73583 * 8 7 5 10 10 C 1.46500 * 120.00463 * 179.97438 * 2 1 3 11 11 H 1.08998 * 110.89126 * 189.41577 * 10 2 1 12 12 C 1.55151 * 111.00359 * 313.34680 * 10 2 1 13 13 C 1.54331 * 103.02130 * 153.37550 * 12 10 2 14 14 N 1.47024 * 107.26585 * 338.14135 * 13 12 10 15 15 C 1.34779 * 125.64706 * 178.85213 * 14 13 12 16 16 O 1.21282 * 119.99656 * 179.69331 * 15 14 13 17 17 C 1.50696 * 120.00151 * 359.68469 * 15 14 13 18 18 S 1.80999 * 109.47064 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99867 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00374 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99805 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00303 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00033 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47052 * 89.99820 * 23 21 19 25 25 H 1.48493 * 109.47411 * 209.99940 * 23 21 19 26 26 H 1.48504 * 109.47076 * 330.00309 * 23 21 19 27 27 C 1.47421 * 108.70046 * 358.58212 * 14 13 12 28 28 H 1.09005 * 109.47253 * 269.99843 * 1 2 3 29 29 H 1.09000 * 109.47118 * 30.00005 * 1 2 3 30 30 H 1.08996 * 109.46993 * 150.00116 * 1 2 3 31 31 H 1.07997 * 120.84529 * 359.95593 * 4 3 2 32 32 H 1.07998 * 119.06851 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.71987 * 271.93360 * 12 10 2 34 34 H 1.09007 * 110.72223 * 35.02973 * 12 10 2 35 35 H 1.08996 * 109.99527 * 218.66413 * 13 12 10 36 36 H 1.09005 * 109.77668 * 97.49275 * 13 12 10 37 37 H 1.09001 * 109.47472 * 300.00688 * 17 15 14 38 38 H 1.08999 * 109.47086 * 60.00281 * 17 15 14 39 39 H 0.97005 * 120.00437 * 180.02562 * 22 21 19 40 40 H 1.09004 * 110.36543 * 143.19814 * 27 14 13 41 41 H 1.09001 * 110.36838 * 265.40822 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1578 1.2001 0.0000 4 6 3.5354 1.2225 -0.2161 5 6 4.1818 2.4470 -0.2071 6 9 5.5153 2.5184 -0.4112 7 7 3.4738 3.5503 0.0049 8 6 2.1729 3.4928 0.2056 9 7 1.5182 2.3494 0.2005 10 6 2.1976 -1.2687 0.0006 11 1 3.2619 -1.1028 0.1671 12 6 1.6147 -2.2470 1.0543 13 6 1.9736 -3.6329 0.4781 14 7 2.1941 -3.4616 -0.9654 15 6 2.5488 -4.4356 -1.8268 16 8 2.6985 -4.1800 -3.0029 17 6 2.7595 -5.8422 -1.3287 18 16 3.2254 -6.9095 -2.7143 19 6 3.4028 -8.4461 -1.8706 20 1 3.2297 -8.5008 -0.8059 21 6 3.7661 -9.5862 -2.5741 22 7 3.9785 -9.5193 -3.8714 23 14 3.9549 -11.2152 -1.6796 24 1 2.6544 -11.9323 -1.6772 25 1 4.9757 -12.0437 -2.3699 26 1 4.3844 -10.9647 -0.2803 27 6 1.9566 -2.0494 -1.3155 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.0842 0.3080 -0.3859 32 1 1.6270 4.4093 0.3745 33 1 2.0881 -2.0957 2.0244 34 1 0.5336 -2.1308 1.1320 35 1 1.1536 -4.3308 0.6476 36 1 2.8830 -4.0045 0.9505 37 1 3.5541 -5.8483 -0.5826 38 1 1.8370 -6.2107 -0.8799 39 1 4.2320 -10.3162 -4.3631 40 1 2.6596 -1.7255 -2.0830 41 1 0.9312 -1.9109 -1.6585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095106522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = -24.651931 kcal Electronic energy + Delta-G solvation = -26182.088679 eV Core-core repulsion = 22137.976560 eV Total energy + Delta-G solvation = -4044.112119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.26465 -42.07855 -41.12864 -39.27534 -37.08121 -34.58931 -34.10008 -32.84193 -32.06609 -30.87957 -29.50959 -27.79775 -27.56480 -25.64555 -24.71793 -23.72135 -21.58749 -20.78782 -19.70385 -19.55206 -19.21351 -18.11148 -17.88715 -17.40968 -16.88651 -16.87733 -16.68711 -16.42718 -16.01342 -15.90280 -15.72769 -15.52533 -15.01102 -14.78929 -14.57087 -14.51309 -14.35725 -14.09150 -13.76545 -13.44207 -13.15958 -13.11997 -12.89388 -12.78770 -12.63969 -12.60811 -12.00190 -11.96378 -11.74051 -11.64514 -11.14456 -11.04647 -10.90701 -10.55861 -10.28405 -9.80212 -9.15638 -8.68623 -8.34972 -6.13640 -0.22853 0.06397 1.16053 1.36805 1.42778 1.49335 1.53504 1.59712 2.09982 2.26948 2.32899 2.63287 2.99432 3.14730 3.18386 3.31386 3.39702 3.54221 3.71466 3.86156 3.98787 4.01271 4.10205 4.17386 4.27446 4.32300 4.44986 4.52257 4.57212 4.63946 4.71038 4.76096 4.87885 4.98986 5.07807 5.21311 5.26333 5.41674 5.42412 5.98782 6.04511 6.19460 6.29602 7.00764 7.05915 7.06574 8.74196 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.002069 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.097861 B =13532.721520 C =14026.182107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.576 5.576 3 C 0.459 3.541 4 C -0.319 4.319 5 C 0.369 3.631 6 F -0.110 7.110 7 N -0.614 5.614 8 C 0.377 3.623 9 N -0.584 5.584 10 C 0.142 3.858 11 H 0.117 0.883 12 C -0.124 4.124 13 C 0.093 3.907 14 N -0.615 5.615 15 C 0.548 3.452 16 O -0.566 6.566 17 C -0.118 4.118 18 S -0.155 6.155 19 C -0.543 4.543 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.256 1.256 27 C 0.095 3.905 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.242 0.758 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 23.049 16.749 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.286 5.286 3 C 0.215 3.785 4 C -0.348 4.348 5 C 0.212 3.788 6 F -0.089 7.089 7 N -0.340 5.340 8 C 0.089 3.911 9 N -0.309 5.309 10 C 0.037 3.963 11 H 0.134 0.866 12 C -0.162 4.162 13 C -0.029 4.029 14 N -0.350 5.350 15 C 0.337 3.663 16 O -0.444 6.444 17 C -0.270 4.270 18 S 0.072 5.928 19 C -0.691 4.691 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.180 1.180 27 C -0.030 4.030 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.181 0.819 32 H 0.258 0.742 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.321 23.895 14.956 29.392 hybrid contribution 0.984 -1.985 0.825 2.364 sum -7.337 21.910 15.781 27.981 Atomic orbital electron populations 1.21841 0.76325 1.03651 1.03248 1.46308 1.06919 1.00728 1.74683 1.18352 0.87170 0.87128 0.85802 1.21981 0.95841 0.99575 1.17438 1.18203 0.78936 0.90130 0.91528 1.91648 1.29189 1.96923 1.91091 1.67897 1.11224 1.31588 1.23305 1.25288 0.84533 0.96104 0.85212 1.68110 1.40802 0.98089 1.23920 1.22284 0.97966 0.81817 0.94282 0.86562 1.23011 1.03838 0.90503 0.98850 1.22378 1.03186 0.99212 0.78161 1.48246 1.68745 1.08112 1.09945 1.19799 0.75588 0.86008 0.84942 1.90708 1.52234 1.83022 1.18477 1.23291 1.06129 0.94031 1.03501 1.85645 1.90079 1.04214 1.12853 1.23183 1.54375 0.94353 0.97199 0.89712 1.26146 0.93938 1.03402 0.95771 1.70185 1.44994 1.31034 1.08624 0.84947 0.78339 0.76180 0.78478 1.19286 1.20480 1.18020 1.22567 1.02070 0.80280 0.98060 0.90772 0.90529 0.90043 0.81922 0.74234 0.86805 0.87984 0.89392 0.89576 0.87227 0.87203 0.92019 0.91909 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 8.87 127.77 1.13 1.94 16 2 N -0.58 -7.06 3.01 -696.46 -2.10 -9.15 16 3 C 0.46 7.22 7.34 133.10 0.98 8.20 16 4 C -0.32 -5.38 9.28 22.62 0.21 -5.17 16 5 C 0.37 7.35 8.50 84.60 0.72 8.07 16 6 F -0.11 -2.34 17.30 44.97 0.78 -1.57 16 7 N -0.61 -11.77 10.45 -201.32 -2.10 -13.87 16 8 C 0.38 5.22 12.28 180.90 2.22 7.44 16 9 N -0.58 -8.96 9.40 -197.69 -1.86 -10.82 16 10 C 0.14 1.71 3.26 46.38 0.15 1.86 16 11 H 0.12 1.35 5.81 -2.39 -0.01 1.34 16 12 C -0.12 -0.97 6.46 31.78 0.21 -0.77 16 13 C 0.09 1.28 6.49 86.73 0.56 1.85 16 14 N -0.61 -14.69 3.33 -811.77 -2.70 -17.39 16 15 C 0.55 19.83 7.87 87.66 0.69 20.52 16 16 O -0.57 -26.21 16.12 -3.04 -0.05 -26.26 16 17 C -0.12 -4.53 5.35 71.23 0.38 -4.15 16 18 S -0.16 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.54 -30.39 9.50 67.96 0.65 -29.75 16 20 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -55.59 13.22 21.65 0.29 -55.31 16 23 Si 1.00 42.79 29.55 68.60 2.03 44.82 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 27 C 0.09 1.86 6.49 86.86 0.56 2.42 16 28 H 0.07 0.48 8.11 -2.38 -0.02 0.46 16 29 H 0.08 0.80 7.58 -2.39 -0.02 0.78 16 30 H 0.08 0.62 6.62 -2.39 -0.02 0.61 16 31 H 0.16 2.36 6.16 -2.91 -0.02 2.35 16 32 H 0.24 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.10 0.57 6.75 -2.38 -0.02 0.55 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 38 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 39 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 40 H 0.06 1.53 8.04 -2.38 -0.02 1.51 16 41 H 0.08 1.46 6.74 -2.39 -0.02 1.44 16 Total: -1.00 -80.29 362.12 3.12 -77.18 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.07 Total: 8.42 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 8.93 Total: 13.60 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -8.47 Total: -106.54 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.57 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -80.29 3.12 -77.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095106522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.524 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds