Wall clock time and date at job start Sat Apr 11 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38578 * 120.00050 * 2 1 4 4 C 1.39463 * 120.51553 * 190.55768 * 3 2 1 5 5 C 1.38468 * 118.31016 * 179.80959 * 4 3 2 6 6 F 1.35103 * 120.42948 * 180.22101 * 5 4 3 7 7 N 1.32791 * 119.13735 * 0.46815 * 5 4 3 8 8 C 1.31757 * 120.96537 * 359.75097 * 7 5 4 9 9 N 1.31767 * 121.85904 * 0.02562 * 8 7 5 10 10 C 1.46500 * 120.00173 * 180.02562 * 2 1 3 11 11 H 1.08997 * 110.64319 * 182.55589 * 10 2 1 12 12 C 1.55154 * 110.72042 * 59.21728 * 10 2 1 13 13 C 1.55135 * 101.48524 * 205.97177 * 12 10 2 14 14 N 1.47424 * 104.72273 * 37.29587 * 13 12 10 15 15 C 1.34774 * 125.64486 * 155.82009 * 14 13 12 16 16 O 1.21286 * 119.99404 * 179.69782 * 15 14 13 17 17 C 1.50695 * 120.00078 * 359.68542 * 15 14 13 18 18 S 1.81002 * 109.46940 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00237 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99773 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00226 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99640 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99969 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47456 * 90.00037 * 23 21 19 25 25 H 1.48501 * 109.47108 * 210.00323 * 23 21 19 26 26 H 1.48506 * 109.47131 * 329.99799 * 23 21 19 27 27 C 1.47016 * 108.70025 * 335.55441 * 14 13 12 28 28 H 1.09001 * 109.47042 * 269.99452 * 1 2 3 29 29 H 1.08996 * 109.47230 * 29.99575 * 1 2 3 30 30 H 1.09005 * 109.46993 * 149.99586 * 1 2 3 31 31 H 1.08001 * 120.84491 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.07383 * 179.97438 * 8 7 5 33 33 H 1.08995 * 111.01031 * 324.21112 * 12 10 2 34 34 H 1.09000 * 111.00367 * 88.02499 * 12 10 2 35 35 H 1.09005 * 110.49165 * 278.45476 * 13 12 10 36 36 H 1.08999 * 110.34073 * 156.06696 * 13 12 10 37 37 H 1.08998 * 109.47607 * 300.00360 * 17 15 14 38 38 H 1.09003 * 109.47022 * 60.01149 * 17 15 14 39 39 H 0.97009 * 119.99605 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.88330 * 120.70255 * 27 14 13 41 41 H 1.09001 * 109.88242 * 241.71060 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1579 1.2001 0.0000 4 6 3.5349 1.2228 -0.2201 5 6 4.1807 2.4477 -0.2144 6 9 5.5129 2.5198 -0.4274 7 7 3.4744 3.5499 0.0082 8 6 2.1749 3.4918 0.2172 9 7 1.5207 2.3479 0.2157 10 6 2.1975 -1.2687 -0.0006 11 1 3.2721 -1.0920 0.0450 12 6 1.8288 -2.1149 -1.2477 13 6 2.1136 -3.5530 -0.7404 14 7 1.6856 -3.5443 0.6704 15 6 1.3111 -4.6244 1.3842 16 8 0.9819 -4.4998 2.5448 17 6 1.3011 -5.9868 0.7402 18 16 0.7553 -7.2205 1.9469 19 6 0.8366 -8.6750 0.9557 20 1 1.1558 -8.6095 -0.0740 21 6 0.4902 -9.9047 1.4980 22 7 0.5505 -10.9912 0.7573 23 14 -0.0627 -10.0178 3.2787 24 1 -1.5363 -9.8502 3.3511 25 1 0.3124 -11.3446 3.8302 26 1 0.5966 -8.9484 4.0706 27 6 1.7411 -2.1632 1.1712 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 4.0831 0.3086 -0.3934 32 1 1.6305 4.4073 0.3955 33 1 0.7778 -1.9899 -1.5080 34 1 2.4707 -1.8656 -2.0926 35 1 3.1774 -3.7795 -0.8127 36 1 1.5311 -4.2778 -1.3092 37 1 0.6176 -5.9824 -0.1089 38 1 2.3057 -6.2337 0.3968 39 1 0.3088 -11.8507 1.1365 40 1 0.7535 -1.8524 1.5119 41 1 2.4547 -2.0951 1.9924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095106523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:54 Heat of formation + Delta-G solvation = -0.446704 kcal Electronic energy + Delta-G solvation = -26185.485245 eV Core-core repulsion = 22142.422744 eV Total energy + Delta-G solvation = -4043.062501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.57153 -41.47036 -40.19861 -38.31649 -36.24230 -33.41753 -32.48976 -32.12459 -31.23655 -29.96737 -28.57910 -27.10005 -25.67494 -25.03389 -23.86624 -23.11378 -20.97710 -19.62597 -19.00676 -18.64082 -17.80227 -17.23364 -16.82280 -16.72093 -16.07998 -15.85215 -15.49969 -15.24729 -15.20654 -14.98770 -14.84972 -14.24947 -14.11375 -13.98688 -13.87216 -13.60857 -13.08047 -12.88252 -12.71354 -12.60428 -12.32208 -12.16438 -11.97774 -11.48595 -11.32657 -11.29567 -11.07789 -11.04523 -10.67733 -10.28694 -9.92393 -9.91273 -9.67350 -9.05317 -8.78594 -8.59333 -8.56381 -6.98623 -6.33791 -4.06380 0.38325 0.69449 1.97266 2.61115 2.81086 2.93855 3.11469 3.24011 3.29353 3.46494 3.52903 3.65514 3.89207 3.96728 4.09675 4.27121 4.28530 4.56317 4.60596 4.60984 4.69132 4.77799 4.83874 5.05260 5.05767 5.06411 5.11627 5.25669 5.30407 5.36079 5.45008 5.49806 5.60195 5.69824 5.81925 5.91122 5.94610 6.13627 6.56059 6.64564 7.37475 7.60777 7.89100 8.28753 8.36276 9.12229 10.75277 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029544 B = 0.002013 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.527317 B =13903.453973 C =14118.043562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.582 5.582 3 C 0.465 3.535 4 C -0.319 4.319 5 C 0.385 3.615 6 F -0.101 7.101 7 N -0.594 5.594 8 C 0.377 3.623 9 N -0.579 5.579 10 C 0.134 3.866 11 H 0.112 0.888 12 C -0.144 4.144 13 C 0.100 3.900 14 N -0.625 5.625 15 C 0.548 3.452 16 O -0.514 6.514 17 C -0.118 4.118 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.089 0.911 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.100 3.900 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.208 0.792 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.076 0.924 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 27.139 -6.548 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.292 5.292 3 C 0.223 3.777 4 C -0.348 4.348 5 C 0.227 3.773 6 F -0.080 7.080 7 N -0.319 5.319 8 C 0.088 3.912 9 N -0.303 5.303 10 C 0.029 3.971 11 H 0.130 0.870 12 C -0.183 4.183 13 C -0.023 4.023 14 N -0.363 5.363 15 C 0.337 3.663 16 O -0.388 6.388 17 C -0.268 4.268 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.515 5.515 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.024 4.024 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.173 0.827 32 H 0.224 0.776 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.059 27.640 -4.634 28.192 hybrid contribution 0.902 -1.203 -0.928 1.767 sum 3.961 26.437 -5.562 27.305 Atomic orbital electron populations 1.21740 0.77348 1.03389 1.02597 1.46349 1.06434 1.01286 1.75150 1.18211 0.87142 0.86612 0.85775 1.21868 0.95501 0.99526 1.17922 1.17986 0.79056 0.89477 0.90755 1.91672 1.28709 1.96849 1.90794 1.67861 1.10255 1.31442 1.22359 1.24578 0.85039 0.95151 0.86465 1.68061 1.40916 0.98016 1.23353 1.22291 0.97252 0.81921 0.95593 0.86999 1.23279 1.03786 0.93965 0.97309 1.22384 1.00884 0.97113 0.81966 1.48379 1.68831 1.06397 1.12671 1.20044 0.75829 0.84487 0.85962 1.90725 1.46364 1.85278 1.16386 1.23252 1.05736 0.94008 1.03799 1.84831 1.88078 1.00800 1.17821 1.22285 1.52792 0.91376 1.00468 0.89348 1.24712 0.93769 0.94490 0.98330 1.69938 1.46288 0.98725 1.36585 0.86737 0.80608 0.79472 0.85053 1.19184 1.19888 1.15937 1.22105 1.02797 0.81577 0.95934 0.92183 0.89988 0.90663 0.82703 0.77593 0.89426 0.88954 0.90572 0.89406 0.88485 0.88397 0.91893 0.90562 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 9.11 59.85 0.54 1.14 16 2 N -0.58 -4.18 2.99 -171.83 -0.51 -4.70 16 3 C 0.47 3.83 7.34 -154.76 -1.14 2.69 16 4 C -0.32 -2.46 9.32 -39.04 -0.36 -2.82 16 5 C 0.39 3.51 8.50 -17.05 -0.14 3.36 16 6 F -0.10 -0.94 17.30 2.25 0.04 -0.90 16 7 N -0.59 -5.57 10.45 -14.98 -0.16 -5.72 16 8 C 0.38 2.81 12.28 -92.21 -1.13 1.68 16 9 N -0.58 -4.91 9.41 -13.84 -0.13 -5.04 16 10 C 0.13 0.89 3.25 -66.10 -0.22 0.68 16 11 H 0.11 0.61 5.60 -51.93 -0.29 0.32 16 12 C -0.14 -0.82 6.63 -24.46 -0.16 -0.99 16 13 C 0.10 0.80 6.70 -2.41 -0.02 0.78 16 14 N -0.62 -7.49 3.32 -170.38 -0.57 -8.05 16 15 C 0.55 9.39 7.87 -10.99 -0.09 9.30 16 16 O -0.51 -10.85 16.19 5.55 0.09 -10.76 16 17 C -0.12 -2.17 5.16 36.00 0.19 -1.99 16 18 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 19 C -0.52 -14.67 10.04 30.94 0.31 -14.36 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 21 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 22 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 23 Si 0.86 21.44 27.74 -169.99 -4.72 16.72 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.24 -5.89 6.74 56.52 0.38 -5.50 16 27 C 0.10 1.00 6.49 -3.07 -0.02 0.98 16 28 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.08 0.53 7.59 -51.93 -0.39 0.13 16 30 H 0.07 0.44 6.35 -51.93 -0.33 0.11 16 31 H 0.16 0.88 6.05 -52.49 -0.32 0.56 16 32 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.09 0.51 6.34 -51.93 -0.33 0.18 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.70 7.48 -51.93 -0.39 0.31 16 37 H 0.10 1.65 7.85 -51.92 -0.41 1.25 16 38 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 0.83 6.75 -51.93 -0.35 0.48 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -34.91 357.91 -9.02 -43.93 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.91 Total: -3.21 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.33 Total: 3.13 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.59 Total: -48.80 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.04 Total: -0.90 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.72 Total: 16.72 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.91 -9.02 -43.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095106523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.480 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds