Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39161 * 120.00044 * 2 1 4 4 C 1.39202 * 120.06021 * 190.68618 * 3 2 1 5 5 N 1.32012 * 119.92704 * 179.70405 * 4 3 2 6 6 C 1.32406 * 120.05831 * 0.56521 * 5 4 3 7 7 F 1.35095 * 119.94078 * 179.72854 * 6 5 4 8 8 C 1.38461 * 120.11880 * 359.70635 * 6 5 4 9 9 N 1.32216 * 120.07253 * 359.97438 * 8 6 5 10 10 C 1.46501 * 120.00432 * 179.97438 * 2 1 3 11 11 H 1.08993 * 110.78183 * 188.85427 * 10 2 1 12 12 C 1.55157 * 110.71804 * 312.09563 * 10 2 1 13 13 C 1.54914 * 101.57981 * 153.86244 * 12 10 2 14 14 N 1.47428 * 104.83210 * 322.98801 * 13 12 10 15 15 C 1.34778 * 125.64899 * 204.09595 * 14 13 12 16 16 O 1.21272 * 119.99944 * 180.02562 * 15 14 13 17 17 C 1.50695 * 119.99852 * 0.04144 * 15 14 13 18 18 S 1.81005 * 109.47016 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99885 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00084 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00172 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99565 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00332 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46987 * 60.00261 * 23 21 19 25 25 H 1.48500 * 109.47369 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47283 * 300.00363 * 23 21 19 27 27 C 1.47021 * 108.70247 * 24.12948 * 14 13 12 28 28 H 1.08992 * 109.46911 * 270.00542 * 1 2 3 29 29 H 1.09000 * 109.46667 * 30.00945 * 1 2 3 30 30 H 1.09004 * 109.46422 * 149.99955 * 1 2 3 31 31 H 1.07993 * 120.03832 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96739 * 179.97438 * 8 6 5 33 33 H 1.08994 * 111.00219 * 271.93267 * 12 10 2 34 34 H 1.08997 * 111.00563 * 35.78987 * 12 10 2 35 35 H 1.08998 * 110.36347 * 204.15102 * 13 12 10 36 36 H 1.08999 * 110.46268 * 81.87533 * 13 12 10 37 37 H 1.09005 * 109.47075 * 299.99829 * 17 15 14 38 38 H 1.09002 * 109.47521 * 60.00225 * 17 15 14 39 39 H 0.97000 * 120.00195 * 179.97438 * 22 21 19 40 40 H 1.09004 * 109.88433 * 239.52242 * 27 14 13 41 41 H 1.09002 * 109.88550 * 118.35811 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1608 1.2052 0.0000 4 6 3.5348 1.2171 -0.2234 5 7 4.1913 2.3624 -0.2286 6 6 3.5459 3.4977 -0.0106 7 9 4.2210 4.6679 -0.0110 8 6 2.1802 3.4879 0.2175 9 7 1.5167 2.3443 0.2176 10 6 2.1976 -1.2687 0.0006 11 1 3.2629 -1.1000 0.1573 12 6 1.6296 -2.2300 1.0778 13 6 2.0032 -3.6131 0.4885 14 7 1.8264 -3.4631 -0.9675 15 6 1.5877 -4.4648 -1.8371 16 8 1.4592 -4.2242 -3.0187 17 6 1.4801 -5.8837 -1.3409 18 16 1.1590 -6.9887 -2.7381 19 6 1.0829 -8.5339 -1.8949 20 1 1.2205 -8.5723 -0.8244 21 6 0.8451 -9.7018 -2.6063 22 7 0.6769 -9.6549 -3.9109 23 14 0.7637 -11.3399 -1.7123 24 1 -0.3302 -11.3022 -0.7086 25 1 0.5009 -12.4254 -2.6909 26 1 2.0560 -11.5944 -1.0266 27 6 1.9545 -2.0401 -1.3138 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3632 -0.8900 -0.5139 31 1 4.0623 0.2908 -0.3966 32 1 1.6563 4.4154 0.3955 33 1 2.1170 -2.0707 2.0396 34 1 0.5486 -2.1223 1.1667 35 1 1.3350 -4.3829 0.8744 36 1 3.0392 -3.8594 0.7214 37 1 2.4138 -6.1714 -0.8577 38 1 0.6623 -5.9569 -0.6240 39 1 0.5111 -10.4711 -4.4082 40 1 1.0365 -1.6892 -1.7852 41 1 2.7983 -1.8973 -1.9889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095107402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = 1.444512 kcal Electronic energy + Delta-G solvation = -26053.021188 eV Core-core repulsion = 22010.040696 eV Total energy + Delta-G solvation = -4042.980492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.29661 -41.58466 -40.10654 -38.15000 -36.06951 -34.58271 -32.47221 -31.65963 -30.59067 -29.88488 -28.60074 -26.83836 -25.53331 -25.15655 -23.94167 -23.06668 -20.90394 -19.51661 -18.67767 -18.62182 -18.14094 -17.75116 -16.72020 -16.65493 -16.31777 -15.47779 -15.42611 -15.08152 -14.97764 -14.84163 -14.52360 -14.11516 -13.97853 -13.90983 -13.84704 -13.47657 -13.02301 -12.67701 -12.61317 -12.55257 -12.23891 -12.10539 -12.00052 -11.86566 -11.75401 -11.24732 -11.08841 -11.07201 -10.81155 -10.47532 -9.87526 -9.71931 -9.54118 -9.10059 -8.68429 -8.29602 -8.18023 -6.55786 -6.25635 -3.97137 0.28151 0.61579 2.03422 2.82696 2.95028 3.05912 3.10514 3.20324 3.22102 3.26107 3.52581 3.71431 3.74183 4.00887 4.08881 4.16613 4.25803 4.44016 4.59348 4.71962 4.79274 4.87353 4.94153 4.99987 5.09473 5.14819 5.30303 5.35770 5.36222 5.47887 5.51132 5.58393 5.67347 5.77156 5.82480 6.05042 6.10533 6.26090 6.51496 6.84194 7.22155 7.48960 7.55121 8.30601 8.43161 9.19421 10.81699 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.034662 B = 0.001879 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.602802 B =14899.859976 C =15044.363394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.586 5.586 3 C 0.351 3.649 4 C 0.032 3.968 5 N -0.429 5.429 6 C 0.183 3.817 7 F -0.110 7.110 8 C 0.098 3.902 9 N -0.474 5.474 10 C 0.137 3.863 11 H 0.110 0.890 12 C -0.142 4.142 13 C 0.102 3.898 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.512 6.512 17 C -0.147 4.147 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.097 3.903 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.177 0.823 32 H 0.181 0.819 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.075 0.925 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 23.638 13.806 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.298 5.298 3 C 0.113 3.887 4 C -0.138 4.138 5 N -0.148 5.148 6 C 0.026 3.974 7 F -0.089 7.089 8 C -0.065 4.065 9 N -0.196 5.196 10 C 0.032 3.968 11 H 0.128 0.872 12 C -0.180 4.180 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.338 3.662 16 O -0.385 6.385 17 C -0.297 4.297 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.028 4.028 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.193 0.807 32 H 0.198 0.802 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.090 23.734 11.795 26.585 hybrid contribution 0.276 -1.063 1.968 2.254 sum 2.366 22.671 13.762 26.626 Atomic orbital electron populations 1.21684 0.77681 1.03426 1.02065 1.46316 1.06096 1.00850 1.76577 1.19333 0.89883 0.87237 0.92238 1.23022 0.90743 0.96203 1.03799 1.67603 1.39870 0.97796 1.09488 1.18802 0.89041 0.82428 1.07094 1.91625 1.80906 1.42216 1.94156 1.23310 0.90116 0.97390 0.95715 1.68057 1.37977 0.96987 1.16600 1.22246 0.97023 0.82059 0.95465 0.87200 1.23198 1.02933 0.93593 0.98322 1.22301 1.02078 0.97414 0.80417 1.48434 1.74004 1.06198 1.07855 1.20079 0.75213 0.85671 0.85225 1.90725 1.48125 1.83707 1.15937 1.23509 1.04922 0.94539 1.06751 1.85435 1.93365 0.98547 1.05984 1.22806 1.57220 0.92435 0.96010 0.90945 1.24996 0.94507 0.99095 0.94967 1.70003 1.45147 1.29015 1.06040 0.86217 0.78767 0.81355 0.79126 1.19927 1.20790 1.19914 1.22201 1.03016 0.81434 0.96155 0.92477 0.90370 0.90696 0.80665 0.80206 0.89041 0.89455 0.89601 0.90744 0.89159 0.89227 0.92077 0.90697 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 8.76 59.85 0.52 1.15 16 2 N -0.59 -4.24 2.99 -171.84 -0.51 -4.76 16 3 C 0.35 2.93 7.32 -154.62 -1.13 1.80 16 4 C 0.03 0.26 10.39 -17.12 -0.18 0.08 16 5 N -0.43 -4.38 10.50 -13.25 -0.14 -4.52 16 6 C 0.18 1.69 8.43 -17.22 -0.15 1.54 16 7 F -0.11 -1.04 17.29 2.25 0.04 -1.00 16 8 C 0.10 0.73 11.20 -17.30 -0.19 0.53 16 9 N -0.47 -4.10 9.44 -12.17 -0.11 -4.22 16 10 C 0.14 0.91 3.15 -66.09 -0.21 0.70 16 11 H 0.11 0.55 5.75 -51.93 -0.30 0.25 16 12 C -0.14 -0.83 6.58 -24.58 -0.16 -1.00 16 13 C 0.10 0.84 6.69 -2.52 -0.02 0.83 16 14 N -0.63 -7.81 3.33 -170.52 -0.57 -8.37 16 15 C 0.55 9.87 7.87 -10.99 -0.09 9.78 16 16 O -0.51 -11.37 16.19 5.56 0.09 -11.28 16 17 C -0.15 -2.83 5.16 36.00 0.19 -2.65 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 23 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.10 0.98 6.42 -3.06 -0.02 0.96 16 28 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 29 H 0.08 0.56 7.58 -51.93 -0.39 0.17 16 30 H 0.07 0.51 6.84 -51.93 -0.35 0.16 16 31 H 0.18 1.06 6.05 -52.49 -0.32 0.74 16 32 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.53 6.82 -51.93 -0.35 0.18 16 35 H 0.09 0.71 7.48 -51.93 -0.39 0.33 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 38 H 0.09 1.58 7.85 -51.92 -0.41 1.18 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.07 0.84 6.81 -51.93 -0.35 0.49 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -35.41 361.36 -8.44 -43.85 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -4.95 Total: -3.36 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.23 Total: 1.08 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.60 Total: -46.89 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.41 -8.44 -43.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095107402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.295 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds