Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.39124 * 110.99681 * 2 1 4 4 N 1.32565 * 120.10654 * 236.06666 * 3 2 1 5 5 C 1.32309 * 119.93894 * 179.69506 * 4 3 2 6 6 C 1.38062 * 120.16671 * 0.55452 * 5 4 3 7 7 N 1.32349 * 120.22194 * 359.44652 * 6 5 4 8 8 C 1.32072 * 120.05414 * 0.26565 * 7 6 5 9 9 F 1.35096 * 120.08632 * 179.97438 * 8 7 6 10 10 C 1.46897 * 111.00525 * 236.04412 * 2 1 3 11 11 H 1.09008 * 110.88322 * 69.22034 * 10 2 1 12 12 C 1.55157 * 111.00595 * 193.10275 * 10 2 1 13 13 C 1.54322 * 102.93947 * 153.57783 * 12 10 2 14 14 N 1.47022 * 107.27419 * 337.80503 * 13 12 10 15 15 C 1.34779 * 125.65212 * 178.89301 * 14 13 12 16 16 O 1.21275 * 119.99843 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99441 * 0.03013 * 15 14 13 18 18 S 1.81007 * 109.46754 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99928 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99884 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99784 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99927 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46985 * 90.00282 * 23 21 19 25 25 H 1.48493 * 109.46915 * 210.00150 * 23 21 19 26 26 H 1.48497 * 109.47342 * 330.00558 * 23 21 19 27 27 C 1.47433 * 108.70125 * 358.94594 * 14 13 12 28 28 H 1.08997 * 109.46889 * 54.10297 * 1 2 3 29 29 H 1.08996 * 109.46862 * 174.09905 * 1 2 3 30 30 H 1.08998 * 109.47188 * 294.10489 * 1 2 3 31 31 H 1.08002 * 119.91820 * 180.30010 * 5 4 3 32 32 H 1.07999 * 119.88773 * 179.71086 * 6 5 4 33 33 H 1.08999 * 110.71894 * 271.93766 * 12 10 2 34 34 H 1.08990 * 110.71789 * 35.21338 * 12 10 2 35 35 H 1.09000 * 109.88608 * 97.22277 * 13 12 10 36 36 H 1.09003 * 109.88310 * 218.38728 * 13 12 10 37 37 H 1.08993 * 109.47326 * 299.99336 * 17 15 14 38 38 H 1.09000 * 109.47315 * 60.00070 * 17 15 14 39 39 H 0.97010 * 120.00198 * 179.97438 * 22 21 19 40 40 H 1.09003 * 110.36262 * 265.28854 * 27 14 13 41 41 H 1.08996 * 110.36613 * 142.96446 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9675 1.2989 0.0000 4 7 2.8035 1.6903 -0.9515 5 6 3.2708 2.9281 -0.9517 6 6 2.8991 3.8102 0.0432 7 7 2.0649 3.4263 0.9963 8 6 1.5886 2.1945 1.0018 9 9 0.7375 1.8018 1.9747 10 6 1.9956 -0.7660 -1.1375 11 1 1.7976 -0.2511 -2.0777 12 6 3.5119 -1.0459 -0.9653 13 6 3.7197 -2.3383 -1.7826 14 7 2.4127 -3.0032 -1.8878 15 6 2.1674 -4.1542 -2.5448 16 8 1.0450 -4.6129 -2.5661 17 6 3.2881 -4.8710 -3.2529 18 16 2.6457 -6.3725 -4.0334 19 6 4.1236 -6.9933 -4.7650 20 1 5.0518 -6.4536 -4.6485 21 6 4.0947 -8.1754 -5.4919 22 7 5.1985 -8.6389 -6.0387 23 14 2.4890 -9.1085 -5.6940 24 1 1.7897 -8.6317 -6.9141 25 1 2.7730 -10.5604 -5.8217 26 1 1.6280 -8.8750 -4.5069 27 6 1.4144 -2.2017 -1.1567 28 1 -0.3633 0.6025 -0.8325 29 1 -0.3633 -1.0222 -0.1057 30 1 -0.3633 0.4197 0.9380 31 1 3.9480 3.2481 -1.7298 32 1 3.2869 4.8181 0.0413 33 1 4.1042 -0.2292 -1.3781 34 1 3.7571 -1.2095 0.0840 35 1 4.0916 -2.0923 -2.7773 36 1 4.4274 -2.9907 -1.2710 37 1 3.7126 -4.2180 -4.0153 38 1 4.0609 -5.1386 -2.5323 39 1 5.1784 -9.4652 -6.5465 40 1 1.2973 -2.5772 -0.1401 41 1 0.4585 -2.2171 -1.6801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095109283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = 6.960901 kcal Electronic energy + Delta-G solvation = -26563.944058 eV Core-core repulsion = 22521.202775 eV Total energy + Delta-G solvation = -4042.741283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.59607 -41.79689 -40.07830 -38.42307 -36.32535 -34.52335 -32.44683 -31.70559 -30.92687 -29.73107 -28.18062 -26.82192 -25.63389 -25.22133 -23.93595 -22.89712 -20.97777 -19.52374 -18.83881 -18.58074 -17.95794 -17.72360 -16.93684 -16.71716 -16.42042 -15.58970 -15.44987 -15.11192 -14.86014 -14.80829 -14.58902 -14.32212 -14.00424 -13.98149 -13.75509 -13.39277 -13.15251 -12.85974 -12.71079 -12.56270 -12.17622 -12.02290 -11.92645 -11.65769 -11.38788 -11.26746 -11.15111 -11.01305 -10.62314 -10.45115 -9.87827 -9.85883 -9.57535 -9.00950 -8.82582 -8.63621 -8.50934 -6.93064 -6.29458 -4.01376 0.04701 0.38285 2.38695 2.69773 2.82703 2.90760 3.05845 3.20342 3.32747 3.50197 3.54557 3.58353 3.68521 4.00358 4.31363 4.32678 4.41147 4.50783 4.66227 4.74271 4.77009 4.81547 4.86719 5.03010 5.06231 5.09643 5.17035 5.33131 5.44159 5.46025 5.53025 5.60366 5.67177 5.72575 5.86978 5.98449 6.01626 6.25608 6.33099 6.55939 7.01955 7.51828 7.93576 8.38712 8.41199 9.16670 10.79704 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.002138 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.861239 B =13090.534789 C =13740.416236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.459 5.459 3 C 0.261 3.739 4 N -0.448 5.448 5 C 0.072 3.928 6 C 0.050 3.950 7 N -0.448 5.448 8 C 0.248 3.752 9 F -0.096 7.096 10 C 0.077 3.923 11 H 0.084 0.916 12 C -0.116 4.116 13 C 0.102 3.898 14 N -0.623 5.623 15 C 0.549 3.451 16 O -0.517 6.517 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.114 3.886 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.182 0.818 32 H 0.181 0.819 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.077 0.923 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 27.240 13.230 30.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.176 5.176 3 C 0.023 3.977 4 N -0.167 5.167 5 C -0.088 4.088 6 C -0.109 4.109 7 N -0.168 5.168 8 C 0.086 3.914 9 F -0.075 7.075 10 C -0.031 4.031 11 H 0.102 0.898 12 C -0.154 4.154 13 C -0.021 4.021 14 N -0.361 5.361 15 C 0.338 3.662 16 O -0.392 6.392 17 C -0.267 4.267 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.010 4.010 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.199 0.801 32 H 0.198 0.802 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.776 25.987 13.500 29.848 hybrid contribution 0.641 0.369 -0.551 0.923 sum -5.135 26.356 12.948 29.810 Atomic orbital electron populations 1.22821 0.82645 1.04871 1.03361 1.59124 1.09895 1.06658 1.41959 1.20620 0.95671 0.90256 0.91165 1.68538 1.10082 1.17247 1.20870 1.23739 0.97816 0.88463 0.98787 1.23460 0.94867 1.02066 0.90514 1.67742 1.09270 1.14431 1.25328 1.18509 0.94278 0.90343 0.88232 1.91621 1.66372 1.89400 1.60094 1.22826 0.96121 0.92850 0.91298 0.89844 1.22680 0.94533 0.96944 1.01258 1.22066 0.85848 0.93449 1.00781 1.48351 1.09930 1.23782 1.54007 1.20000 0.90016 0.78706 0.77526 1.90706 1.23685 1.64671 1.60107 1.23246 0.99473 1.01534 1.02480 1.84790 1.17453 1.22281 1.67109 1.22301 0.94307 1.12188 1.38004 0.89358 1.24712 0.96796 0.96072 0.93741 1.69937 1.26956 1.21623 1.33139 0.86734 0.84121 0.79717 0.81283 1.19212 1.19932 1.15915 1.22147 0.92851 0.88277 0.97679 0.93604 0.88551 0.88977 0.80132 0.80228 0.88817 0.90115 0.90830 0.90785 0.88498 0.88441 0.91935 0.90471 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.01 60.07 0.54 0.60 16 2 N -0.46 -3.99 4.66 -170.75 -0.80 -4.78 16 3 C 0.26 2.27 6.10 -154.58 -0.94 1.32 16 4 N -0.45 -3.45 7.44 -12.17 -0.09 -3.54 16 5 C 0.07 0.35 11.21 -17.41 -0.20 0.16 16 6 C 0.05 0.25 11.21 -17.39 -0.19 0.06 16 7 N -0.45 -3.82 10.50 -13.24 -0.14 -3.96 16 8 C 0.25 2.27 8.14 -16.93 -0.14 2.13 16 9 F -0.10 -0.91 14.90 2.25 0.03 -0.88 16 10 C 0.08 0.71 2.23 -65.57 -0.15 0.56 16 11 H 0.08 0.81 7.80 -51.92 -0.41 0.41 16 12 C -0.12 -1.02 5.78 -24.90 -0.14 -1.16 16 13 C 0.10 1.07 6.49 -3.07 -0.02 1.05 16 14 N -0.62 -8.57 3.33 -170.52 -0.57 -9.13 16 15 C 0.55 10.06 7.87 -10.99 -0.09 9.97 16 16 O -0.52 -11.32 16.12 5.56 0.09 -11.23 16 17 C -0.12 -2.29 5.35 36.00 0.19 -2.10 16 18 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 19 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 23 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.24 -5.98 6.74 56.52 0.38 -5.59 16 27 C 0.11 1.29 4.99 -2.53 -0.01 1.28 16 28 H 0.05 0.31 8.10 -51.93 -0.42 -0.11 16 29 H 0.10 0.64 6.43 -51.93 -0.33 0.31 16 30 H 0.09 0.62 5.96 -51.93 -0.31 0.31 16 31 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 32 H 0.18 0.26 8.06 -52.49 -0.42 -0.16 16 33 H 0.09 0.76 7.06 -51.93 -0.37 0.39 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.08 0.87 8.11 -51.93 -0.42 0.44 16 41 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -35.49 356.40 -8.16 -43.65 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -5.19 Total: -3.12 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -0.93 Total: 1.92 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.82 Total: -47.14 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.03 Total: -0.88 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.49 -8.16 -43.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095109283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.608 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds