Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.39124 * 110.99681 * 2 1 4 4 N 1.32565 * 120.10654 * 236.06666 * 3 2 1 5 5 C 1.32309 * 119.93894 * 179.69506 * 4 3 2 6 6 C 1.38062 * 120.16671 * 0.55452 * 5 4 3 7 7 N 1.32349 * 120.22194 * 359.44652 * 6 5 4 8 8 C 1.32072 * 120.05414 * 0.26565 * 7 6 5 9 9 F 1.35096 * 120.08632 * 179.97438 * 8 7 6 10 10 C 1.46897 * 111.00525 * 236.04412 * 2 1 3 11 11 H 1.09008 * 110.88322 * 69.22034 * 10 2 1 12 12 C 1.55157 * 111.00595 * 193.10275 * 10 2 1 13 13 C 1.54322 * 102.93947 * 153.57783 * 12 10 2 14 14 N 1.47022 * 107.27419 * 337.80503 * 13 12 10 15 15 C 1.34779 * 125.65212 * 178.89301 * 14 13 12 16 16 O 1.21275 * 119.99843 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99441 * 0.03013 * 15 14 13 18 18 S 1.81007 * 109.46754 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99928 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99884 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99784 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99927 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46985 * 90.00282 * 23 21 19 25 25 H 1.48493 * 109.46915 * 210.00150 * 23 21 19 26 26 H 1.48497 * 109.47342 * 330.00558 * 23 21 19 27 27 C 1.47433 * 108.70125 * 358.94594 * 14 13 12 28 28 H 1.08997 * 109.46889 * 54.10297 * 1 2 3 29 29 H 1.08996 * 109.46862 * 174.09905 * 1 2 3 30 30 H 1.08998 * 109.47188 * 294.10489 * 1 2 3 31 31 H 1.08002 * 119.91820 * 180.30010 * 5 4 3 32 32 H 1.07999 * 119.88773 * 179.71086 * 6 5 4 33 33 H 1.08999 * 110.71894 * 271.93766 * 12 10 2 34 34 H 1.08990 * 110.71789 * 35.21338 * 12 10 2 35 35 H 1.09000 * 109.88608 * 97.22277 * 13 12 10 36 36 H 1.09003 * 109.88310 * 218.38728 * 13 12 10 37 37 H 1.08993 * 109.47326 * 299.99336 * 17 15 14 38 38 H 1.09000 * 109.47315 * 60.00070 * 17 15 14 39 39 H 0.97010 * 120.00198 * 179.97438 * 22 21 19 40 40 H 1.09003 * 110.36262 * 265.28854 * 27 14 13 41 41 H 1.08996 * 110.36613 * 142.96446 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9675 1.2989 0.0000 4 7 2.8035 1.6903 -0.9515 5 6 3.2708 2.9281 -0.9517 6 6 2.8991 3.8102 0.0432 7 7 2.0649 3.4263 0.9963 8 6 1.5886 2.1945 1.0018 9 9 0.7375 1.8018 1.9747 10 6 1.9956 -0.7660 -1.1375 11 1 1.7976 -0.2511 -2.0777 12 6 3.5119 -1.0459 -0.9653 13 6 3.7197 -2.3383 -1.7826 14 7 2.4127 -3.0032 -1.8878 15 6 2.1674 -4.1542 -2.5448 16 8 1.0450 -4.6129 -2.5661 17 6 3.2881 -4.8710 -3.2529 18 16 2.6457 -6.3725 -4.0334 19 6 4.1236 -6.9933 -4.7650 20 1 5.0518 -6.4536 -4.6485 21 6 4.0947 -8.1754 -5.4919 22 7 5.1985 -8.6389 -6.0387 23 14 2.4890 -9.1085 -5.6940 24 1 1.7897 -8.6317 -6.9141 25 1 2.7730 -10.5604 -5.8217 26 1 1.6280 -8.8750 -4.5069 27 6 1.4144 -2.2017 -1.1567 28 1 -0.3633 0.6025 -0.8325 29 1 -0.3633 -1.0222 -0.1057 30 1 -0.3633 0.4197 0.9380 31 1 3.9480 3.2481 -1.7298 32 1 3.2869 4.8181 0.0413 33 1 4.1042 -0.2292 -1.3781 34 1 3.7571 -1.2095 0.0840 35 1 4.0916 -2.0923 -2.7773 36 1 4.4274 -2.9907 -1.2710 37 1 3.7126 -4.2180 -4.0153 38 1 4.0609 -5.1386 -2.5323 39 1 5.1784 -9.4652 -6.5465 40 1 1.2973 -2.5772 -0.1401 41 1 0.4585 -2.2171 -1.6801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095109283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -18.218014 kcal Electronic energy + Delta-G solvation = -26565.035898 eV Core-core repulsion = 22521.202775 eV Total energy + Delta-G solvation = -4043.833123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.21536 -42.34717 -41.14218 -39.42754 -37.29857 -35.06015 -34.67482 -32.75649 -31.55114 -30.92107 -29.17015 -27.86905 -27.44814 -25.84717 -24.57447 -23.79093 -21.74638 -20.80112 -19.70197 -19.36034 -19.14230 -18.62661 -18.12835 -17.53025 -17.28211 -17.11734 -16.63813 -16.21115 -15.96558 -15.72925 -15.53160 -15.26146 -15.02426 -14.88950 -14.69140 -14.53473 -14.31116 -14.03795 -13.90662 -13.49063 -13.33990 -13.20560 -13.01623 -12.73772 -12.67923 -12.57635 -12.39313 -12.15361 -11.88139 -11.85626 -11.17224 -11.08225 -11.02531 -10.54859 -10.37805 -9.79348 -9.38298 -9.01336 -8.51582 -6.22870 -0.44386 -0.12485 0.93997 1.31296 1.42730 1.46803 1.51510 1.81795 2.11224 2.24910 2.34052 2.57145 2.67083 2.86579 3.08516 3.11769 3.22111 3.54681 3.72221 3.90645 3.99419 4.07782 4.14767 4.22901 4.25530 4.27526 4.29993 4.40451 4.46362 4.56758 4.71672 4.73462 4.78848 4.96179 5.02458 5.14072 5.17653 5.40647 5.70669 5.70878 6.06609 6.11527 6.27943 6.52895 6.93437 6.99785 8.60673 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.002138 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.861239 B =13090.534789 C =13740.416236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.466 5.466 3 C 0.248 3.752 4 N -0.462 5.462 5 C 0.083 3.917 6 C 0.060 3.940 7 N -0.473 5.473 8 C 0.224 3.776 9 F -0.108 7.108 10 C 0.091 3.909 11 H 0.081 0.919 12 C -0.103 4.103 13 C 0.095 3.905 14 N -0.614 5.614 15 C 0.550 3.450 16 O -0.561 6.561 17 C -0.102 4.102 18 S -0.175 6.175 19 C -0.527 4.527 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.238 1.238 27 C 0.113 3.887 28 H 0.047 0.953 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.221 0.779 32 H 0.219 0.781 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.277 0.723 40 H 0.080 0.920 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 29.460 13.393 32.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.183 5.183 3 C 0.013 3.987 4 N -0.181 5.181 5 C -0.078 4.078 6 C -0.100 4.100 7 N -0.193 5.193 8 C 0.064 3.936 9 F -0.087 7.087 10 C -0.017 4.017 11 H 0.099 0.901 12 C -0.141 4.141 13 C -0.028 4.028 14 N -0.349 5.349 15 C 0.339 3.661 16 O -0.440 6.440 17 C -0.252 4.252 18 S 0.051 5.949 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.010 4.010 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.238 0.762 32 H 0.235 0.765 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.315 28.231 13.703 31.828 hybrid contribution 0.641 -0.032 -0.562 0.853 sum -4.674 28.199 13.141 31.459 Atomic orbital electron populations 1.22831 0.82226 1.04981 1.03558 1.59117 1.10433 1.07188 1.41606 1.20534 0.96463 0.90104 0.91646 1.68568 1.10099 1.18760 1.20692 1.24449 0.96953 0.87255 0.99130 1.24194 0.93021 1.03604 0.89140 1.67780 1.10375 1.14290 1.26841 1.18597 0.95303 0.91001 0.88710 1.91579 1.66899 1.89608 1.60609 1.22615 0.96168 0.91345 0.91614 0.90079 1.22609 0.94258 0.96230 1.00977 1.22359 0.84266 0.94161 1.01995 1.48264 1.12038 1.22385 1.52209 1.19644 0.88796 0.79775 0.77935 1.90688 1.24912 1.66258 1.62109 1.23193 1.00152 0.98951 1.02947 1.84720 1.16524 1.25943 1.67680 1.22430 0.94734 1.12216 1.38107 0.91827 1.25551 0.99858 0.97020 0.93538 1.70011 1.28830 1.22462 1.34047 0.85878 0.80255 0.79167 0.81149 1.18650 1.18313 1.16147 1.22265 0.92194 0.89357 0.97217 0.93378 0.88414 0.88849 0.76212 0.76451 0.87449 0.90119 0.89696 0.89951 0.86926 0.87053 0.91346 0.90214 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.01 127.69 1.15 1.28 16 2 N -0.47 -7.64 4.66 -694.14 -3.23 -10.87 16 3 C 0.25 3.98 6.10 133.09 0.81 4.80 16 4 N -0.46 -5.91 7.44 -192.41 -1.43 -7.35 16 5 C 0.08 0.50 11.21 84.58 0.95 1.45 16 6 C 0.06 0.42 11.21 84.57 0.95 1.36 16 7 N -0.47 -7.30 10.50 -195.80 -2.06 -9.36 16 8 C 0.22 3.93 8.14 84.99 0.69 4.62 16 9 F -0.11 -2.09 14.90 44.97 0.67 -1.42 16 10 C 0.09 1.53 2.23 46.31 0.10 1.63 16 11 H 0.08 1.43 7.80 -2.38 -0.02 1.41 16 12 C -0.10 -1.56 5.78 31.78 0.18 -1.37 16 13 C 0.09 1.76 6.49 86.73 0.56 2.33 16 14 N -0.61 -16.05 3.33 -811.79 -2.70 -18.75 16 15 C 0.55 19.76 7.87 87.66 0.69 20.45 16 16 O -0.56 -24.59 16.12 -3.01 -0.05 -24.64 16 17 C -0.10 -3.91 5.35 71.24 0.38 -3.53 16 18 S -0.18 -8.91 18.55 -56.49 -1.05 -9.96 16 19 C -0.53 -30.64 10.04 67.95 0.68 -29.96 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.69 5.50 84.86 0.47 3.15 16 22 N -0.92 -55.56 13.97 21.65 0.30 -55.26 16 23 Si 0.91 44.99 27.74 68.60 1.90 46.90 16 24 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 27 C 0.11 2.45 4.99 86.85 0.43 2.88 16 28 H 0.05 0.64 8.10 -2.39 -0.02 0.62 16 29 H 0.10 1.30 6.43 -2.39 -0.02 1.28 16 30 H 0.09 1.28 5.96 -2.39 -0.01 1.27 16 31 H 0.22 -0.53 8.06 -2.91 -0.02 -0.55 16 32 H 0.22 -0.35 8.06 -2.91 -0.02 -0.38 16 33 H 0.11 1.39 7.06 -2.39 -0.02 1.38 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 38 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 39 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 40 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 41 H 0.07 1.73 7.71 -2.39 -0.02 1.71 16 Total: -1.00 -78.09 356.40 1.44 -76.66 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.02 Total: 4.95 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 8.05 Total: 9.10 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -9.12 Total: -101.58 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.67 Total: -1.42 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -78.09 1.44 -76.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095109283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.438 kcal (2) G-P(sol) polarization free energy of solvation -78.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds