Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.39115 * 110.99695 * 2 1 4 4 N 1.32573 * 120.11079 * 123.95746 * 3 2 1 5 5 C 1.32300 * 119.94273 * 180.02562 * 4 3 2 6 6 C 1.38064 * 120.16885 * 359.97438 * 5 4 3 7 7 N 1.32345 * 120.21961 * 0.02562 * 6 5 4 8 8 C 1.32069 * 120.05491 * 0.02562 * 7 6 5 9 9 F 1.35104 * 120.08051 * 179.97438 * 8 7 6 10 10 C 1.46899 * 110.99820 * 123.94843 * 2 1 3 11 11 H 1.08998 * 110.88965 * 289.58881 * 10 2 1 12 12 C 1.55160 * 111.00300 * 165.70691 * 10 2 1 13 13 C 1.54362 * 102.92485 * 206.45766 * 12 10 2 14 14 N 1.47026 * 107.28660 * 22.13807 * 13 12 10 15 15 C 1.34780 * 125.64815 * 181.05729 * 14 13 12 16 16 O 1.21277 * 119.99925 * 180.02562 * 15 14 13 17 17 C 1.50708 * 119.99832 * 0.04446 * 15 14 13 18 18 S 1.81000 * 109.46971 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00040 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99920 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00417 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99295 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00331 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47040 * 60.00145 * 23 21 19 25 25 H 1.48499 * 109.46922 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46805 * 299.99676 * 23 21 19 27 27 C 1.47417 * 108.70473 * 1.09529 * 14 13 12 28 28 H 1.08996 * 109.47459 * 65.78378 * 1 2 3 29 29 H 1.09001 * 109.47383 * 185.78378 * 1 2 3 30 30 H 1.08998 * 109.47373 * 305.78354 * 1 2 3 31 31 H 1.07999 * 119.91635 * 179.97438 * 5 4 3 32 32 H 1.08006 * 119.88994 * 179.74681 * 6 5 4 33 33 H 1.09002 * 110.71889 * 324.79358 * 12 10 2 34 34 H 1.09006 * 110.71873 * 88.06044 * 12 10 2 35 35 H 1.08999 * 109.84713 * 262.73669 * 13 12 10 36 36 H 1.09002 * 110.03264 * 141.65313 * 13 12 10 37 37 H 1.09004 * 109.47107 * 300.00116 * 17 15 14 38 38 H 1.09000 * 109.47255 * 59.99660 * 17 15 14 39 39 H 0.97004 * 119.99307 * 180.02562 * 22 21 19 40 40 H 1.09004 * 110.36955 * 217.03247 * 27 14 13 41 41 H 1.08995 * 110.36921 * 94.70469 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9675 1.2988 0.0000 4 7 2.8039 1.6902 0.9512 5 6 3.2755 2.9262 0.9483 6 6 2.8993 3.8100 -0.0434 7 7 2.0648 3.4263 -0.9962 8 6 1.5878 2.1947 -1.0012 9 9 0.7355 1.8026 -1.9733 10 6 1.9954 -0.7659 1.1377 11 1 1.8159 -0.2410 2.0759 12 6 3.5051 -1.0716 0.9514 13 6 3.7004 -2.3619 1.7758 14 7 2.3837 -3.0040 1.9008 15 6 2.1271 -4.1465 2.5681 16 8 0.9976 -4.5867 2.6049 17 6 3.2437 -4.8768 3.2691 18 16 2.5857 -6.3625 4.0665 19 6 4.0611 -7.0023 4.7863 20 1 4.9967 -6.4789 4.6555 21 6 4.0211 -8.1790 5.5214 22 7 2.8806 -8.8165 5.6812 23 14 5.5852 -8.8569 6.2852 24 1 6.1453 -7.8605 7.2333 25 1 5.2760 -10.1133 7.0138 26 1 6.5775 -9.1354 5.2162 27 6 1.3908 -2.1917 1.1745 28 1 -0.3634 0.4215 -0.9372 29 1 -0.3634 -1.0224 0.1036 30 1 -0.3634 0.6009 0.8336 31 1 3.9565 3.2448 1.7237 32 1 3.2839 4.8193 -0.0392 33 1 3.7363 -1.2469 -0.0993 34 1 4.1149 -0.2614 1.3515 35 1 4.0874 -2.1144 2.7643 36 1 4.3921 -3.0310 1.2640 37 1 4.0042 -5.1616 2.5420 38 1 3.6871 -4.2257 4.0224 39 1 2.8526 -9.6387 6.1953 40 1 0.4406 -2.1871 1.7086 41 1 1.2561 -2.5729 0.1623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095109284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = 6.645265 kcal Electronic energy + Delta-G solvation = -26516.181728 eV Core-core repulsion = 22473.426758 eV Total energy + Delta-G solvation = -4042.754970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.57299 -41.77109 -40.00482 -38.34317 -36.25164 -34.49959 -32.43178 -31.63579 -30.88356 -29.62945 -28.09573 -26.79019 -25.51854 -25.16802 -23.89837 -22.83204 -20.92285 -19.42995 -18.81204 -18.55992 -17.93096 -17.70518 -16.91475 -16.60677 -16.37227 -15.55774 -15.38277 -14.96729 -14.80185 -14.74458 -14.56822 -14.24563 -13.97604 -13.94977 -13.80426 -13.36883 -13.08388 -12.68640 -12.53497 -12.51000 -12.14997 -11.97589 -11.81569 -11.60885 -11.34807 -11.11855 -11.04121 -11.03903 -10.77514 -10.42100 -9.86271 -9.82024 -9.45312 -9.06112 -8.79811 -8.54880 -8.24566 -6.50831 -6.21718 -3.92578 0.06770 0.40400 2.44057 2.81500 2.91066 3.03013 3.12541 3.23363 3.25724 3.29029 3.54250 3.60197 3.72411 4.05589 4.20393 4.34316 4.44674 4.52875 4.75603 4.80762 4.84657 4.88389 5.01565 5.07389 5.13210 5.13911 5.36977 5.45571 5.47373 5.57111 5.60216 5.65217 5.72752 5.80761 5.94550 6.02809 6.13762 6.31903 6.38921 6.58192 7.04206 7.58870 7.62404 8.34869 8.51863 9.23354 10.85671 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.002091 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.194176 B =13387.457135 C =14122.533163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.459 5.459 3 C 0.261 3.739 4 N -0.448 5.448 5 C 0.072 3.928 6 C 0.049 3.951 7 N -0.448 5.448 8 C 0.248 3.752 9 F -0.096 7.096 10 C 0.077 3.923 11 H 0.084 0.916 12 C -0.116 4.116 13 C 0.104 3.896 14 N -0.625 5.625 15 C 0.550 3.450 16 O -0.515 6.515 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.114 3.886 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.045 0.955 31 H 0.181 0.819 32 H 0.181 0.819 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.080 0.920 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 27.137 -12.136 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.176 5.176 3 C 0.023 3.977 4 N -0.168 5.168 5 C -0.088 4.088 6 C -0.110 4.110 7 N -0.168 5.168 8 C 0.086 3.914 9 F -0.075 7.075 10 C -0.031 4.031 11 H 0.102 0.898 12 C -0.154 4.154 13 C -0.020 4.020 14 N -0.363 5.363 15 C 0.339 3.661 16 O -0.389 6.389 17 C -0.296 4.296 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.010 4.010 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.198 0.802 32 H 0.197 0.803 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.699 25.892 -12.405 28.719 hybrid contribution 2.085 0.455 0.745 2.260 sum 1.386 26.347 -11.660 28.845 Atomic orbital electron populations 1.22828 0.82628 1.04947 1.03339 1.59134 1.09920 1.06595 1.41943 1.20629 0.95650 0.90256 0.91134 1.68534 1.10102 1.17303 1.20830 1.23730 0.97811 0.88512 0.98756 1.23454 0.94917 1.02036 0.90566 1.67735 1.09308 1.14479 1.25256 1.18510 0.94245 0.90349 0.88280 1.91623 1.66280 1.89419 1.60161 1.22835 0.96049 0.92956 0.91272 0.89815 1.22675 0.94671 0.96875 1.01168 1.22027 0.85761 0.93669 1.00529 1.48395 1.09284 1.24573 1.54015 1.20048 0.90161 0.78547 0.77354 1.90709 1.23169 1.65070 1.59941 1.23502 0.99770 1.03761 1.02611 1.85395 1.14181 1.19197 1.64623 1.22812 0.94941 1.12056 1.38534 0.90965 1.24995 0.97247 0.95710 0.95642 1.70013 1.24929 1.16929 1.38409 0.86218 0.81869 0.78223 0.79156 1.19938 1.20813 1.19923 1.22145 0.92963 0.88179 0.97731 0.88989 0.88484 0.93594 0.80172 0.80252 0.90140 0.88978 0.91024 0.90946 0.89213 0.89223 0.92126 0.90155 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.00 60.07 0.54 0.60 16 2 N -0.46 -4.15 4.66 -170.75 -0.80 -4.94 16 3 C 0.26 2.34 6.12 -154.58 -0.95 1.40 16 4 N -0.45 -3.57 7.50 -12.17 -0.09 -3.66 16 5 C 0.07 0.37 11.21 -17.41 -0.20 0.17 16 6 C 0.05 0.26 11.21 -17.39 -0.19 0.06 16 7 N -0.45 -3.91 10.50 -13.24 -0.14 -4.04 16 8 C 0.25 2.33 8.14 -16.94 -0.14 2.19 16 9 F -0.10 -0.93 14.89 2.25 0.03 -0.90 16 10 C 0.08 0.74 2.24 -65.56 -0.15 0.59 16 11 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 12 C -0.12 -1.06 5.83 -24.87 -0.14 -1.20 16 13 C 0.10 1.14 6.49 -3.04 -0.02 1.12 16 14 N -0.62 -9.04 3.33 -170.49 -0.57 -9.61 16 15 C 0.55 10.63 7.87 -10.98 -0.09 10.55 16 16 O -0.51 -11.90 16.12 5.56 0.09 -11.81 16 17 C -0.15 -3.00 5.35 36.01 0.19 -2.80 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.11 1.36 4.95 -2.53 -0.01 1.34 16 28 H 0.09 0.65 5.96 -51.93 -0.31 0.34 16 29 H 0.10 0.69 6.38 -51.93 -0.33 0.36 16 30 H 0.05 0.33 8.11 -51.93 -0.42 -0.09 16 31 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 32 H 0.18 0.29 8.06 -52.48 -0.42 -0.13 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.77 7.14 -51.93 -0.37 0.40 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.08 1.00 7.73 -51.93 -0.40 0.60 16 41 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -35.87 359.11 -8.67 -44.54 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.16 Total: -3.09 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.95 Total: 1.08 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.86 Total: -47.69 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.03 Total: -0.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.87 -8.67 -44.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095109284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.181 kcal (2) G-P(sol) polarization free energy of solvation -35.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds