Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.76193 * 100.00049 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99640 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47282 * 59.99711 * 11 9 7 13 13 H 1.48497 * 109.47200 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47280 * 300.00084 * 11 9 7 15 15 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.29060 * 180.69638 * 15 2 1 17 17 C 1.54263 * 110.32328 * 302.82432 * 15 2 1 18 18 C 1.54378 * 105.05902 * 118.89397 * 17 15 2 19 19 N 1.48558 * 104.59852 * 23.85366 * 18 17 15 20 20 C 1.39154 * 111.00772 * 200.96014 * 19 18 17 21 21 C 1.39208 * 120.05580 * 300.13186 * 20 19 18 22 22 N 1.32011 * 119.93045 * 180.02562 * 21 20 19 23 23 C 1.32406 * 120.05497 * 359.97438 * 22 21 20 24 24 F 1.35103 * 119.93737 * 180.02562 * 23 22 21 25 25 C 1.38468 * 120.12038 * 0.02562 * 23 22 21 26 26 N 1.32214 * 120.06831 * 359.72589 * 25 23 22 27 27 C 1.48725 * 104.28781 * 320.57654 * 19 18 17 28 28 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 29 29 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 30 30 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 32 32 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 33 33 H 0.97010 * 119.99946 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.32767 * 237.78988 * 17 15 2 35 35 H 1.09000 * 110.32241 * 359.90463 * 17 15 2 36 36 H 1.09000 * 110.41190 * 142.63740 * 18 17 15 37 37 H 1.09010 * 110.41560 * 265.07606 * 18 17 15 38 38 H 1.07999 * 120.04098 * 359.96889 * 21 20 19 39 39 H 1.08004 * 119.96668 * 180.02562 * 25 23 22 40 40 H 1.09003 * 110.38612 * 280.64076 * 27 19 18 41 41 H 1.08999 * 110.50934 * 158.14053 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2264 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 -0.1141 7.8868 1.2162 13 1 1.5067 9.2222 0.0031 14 1 -0.1148 7.8875 -1.2087 15 6 2.1975 -1.2687 -0.0006 16 1 3.2718 -1.0848 0.0119 17 6 1.7863 -2.1253 1.2147 18 6 1.1848 -3.4132 0.6124 19 7 1.7901 -3.5120 -0.7406 20 6 1.0237 -4.3233 -1.5719 21 6 0.7962 -5.6536 -1.2310 22 7 0.0693 -6.4211 -2.0217 23 6 -0.4435 -5.9264 -3.1376 24 9 -1.1876 -6.7138 -3.9448 25 6 -0.2186 -4.6034 -3.4788 26 7 0.5046 -3.8290 -2.6880 27 6 1.8119 -2.1099 -1.2362 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.7583 2.5303 -0.8892 32 1 0.7589 2.5299 0.8908 33 1 3.5667 7.6331 0.0031 34 1 2.6590 -2.3634 1.8227 35 1 1.0407 -1.6011 1.8125 36 1 1.4587 -4.2788 1.2156 37 1 0.1005 -3.3281 0.5385 38 1 1.2148 -6.0578 -0.3211 39 1 -0.6385 -4.2022 -4.3895 40 1 0.8261 -1.8206 -1.6005 41 1 2.5578 -1.9944 -2.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102669856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = 4.300724 kcal Electronic energy + Delta-G solvation = -26300.543061 eV Core-core repulsion = 22257.686423 eV Total energy + Delta-G solvation = -4042.856637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.52064 -41.89022 -40.14943 -38.51445 -35.50780 -34.74889 -32.57863 -32.45352 -29.95124 -29.61001 -28.22951 -26.81835 -25.55271 -25.35508 -24.39737 -22.02440 -21.38656 -19.34021 -18.60411 -18.52616 -17.96290 -17.77598 -17.02863 -16.79147 -15.90637 -15.77240 -15.40698 -15.18977 -14.85986 -14.82816 -14.69211 -14.27937 -14.08249 -13.79509 -13.31835 -13.11194 -13.01835 -12.72164 -12.59131 -12.39814 -12.32948 -12.16824 -11.94502 -11.82561 -11.68472 -11.08327 -11.05997 -11.02406 -10.79028 -10.48963 -9.85977 -9.83730 -9.43607 -9.08320 -8.83057 -8.66276 -8.26548 -6.53299 -6.23903 -3.94926 0.04944 0.40243 2.59855 2.84209 2.87088 2.94705 3.07601 3.21480 3.23523 3.27188 3.50998 3.59808 3.78852 4.09337 4.17871 4.23101 4.41127 4.48250 4.62051 4.80589 4.84371 4.89712 4.91804 5.09083 5.11186 5.14069 5.30201 5.37917 5.45798 5.52309 5.55753 5.67462 5.68801 5.76862 5.85850 5.94855 6.08398 6.26705 6.54602 6.61547 7.02374 7.41156 7.56734 8.32347 8.46184 9.21213 10.83407 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002060 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.031264 B =13592.127171 C =14215.065186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.536 3.464 4 O -0.512 6.512 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.136 3.864 16 H 0.118 0.882 17 C -0.136 4.136 18 C 0.040 3.960 19 N -0.445 5.445 20 C 0.250 3.750 21 C 0.085 3.915 22 N -0.449 5.449 23 C 0.223 3.777 24 F -0.104 7.104 25 C 0.072 3.928 26 N -0.446 5.446 27 C 0.034 3.966 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.269 0.731 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.183 0.817 39 H 0.184 0.816 40 H 0.079 0.921 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 -25.261 -1.219 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.354 5.354 3 C 0.324 3.676 4 O -0.386 6.386 5 C -0.300 4.300 6 S 0.166 5.834 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.031 3.969 16 H 0.136 0.864 17 C -0.175 4.175 18 C -0.086 4.086 19 N -0.163 5.163 20 C 0.014 3.986 21 C -0.080 4.080 22 N -0.168 5.168 23 C 0.067 3.933 24 F -0.083 7.083 25 C -0.090 4.090 26 N -0.165 5.165 27 C -0.093 4.093 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.199 0.801 39 H 0.201 0.799 40 H 0.097 0.903 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.721 -25.330 -1.217 26.234 hybrid contribution -3.089 0.883 -0.376 3.235 sum -9.810 -24.446 -1.593 26.389 Atomic orbital electron populations 1.21742 0.79899 1.03081 1.01869 1.47885 1.06599 1.05134 1.75794 1.20386 0.87954 0.84480 0.74754 1.90699 1.13712 1.86658 1.47522 1.23562 1.04595 0.97118 1.04769 1.85409 1.07958 0.93303 1.96715 1.22808 0.94245 0.92198 1.59176 0.91000 1.24992 0.95680 0.98378 0.94516 1.70005 1.11744 1.21798 1.46668 0.86227 0.80186 0.80309 0.78793 1.19940 1.20798 1.19939 1.21722 0.99447 0.82966 0.92793 0.86433 1.22780 1.02472 0.94164 0.98118 1.23328 0.97597 1.00326 0.87336 1.62543 1.40554 1.10563 1.02653 1.21135 0.91094 0.93568 0.92755 1.23142 0.95912 0.89215 0.99735 1.67733 1.07893 1.38105 1.03061 1.19023 0.95745 0.88606 0.89879 1.91659 1.72922 1.74454 1.69262 1.23492 0.96074 0.89181 1.00292 1.68498 1.07436 1.35915 1.04614 1.23519 1.03731 0.84071 0.98019 0.92640 0.91669 0.90250 0.89198 0.89199 0.92101 0.89266 0.89494 0.88430 0.92399 0.80059 0.79946 0.90309 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 8.93 59.84 0.53 1.27 16 2 N -0.62 -7.91 2.80 -172.36 -0.48 -8.39 16 3 C 0.54 9.62 7.69 -10.98 -0.08 9.54 16 4 O -0.51 -11.17 15.22 5.56 0.08 -11.09 16 5 C -0.15 -2.92 4.71 36.01 0.17 -2.75 16 6 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 7 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 11 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 15 C 0.14 1.49 3.46 -66.55 -0.23 1.26 16 16 H 0.12 1.57 6.96 -51.93 -0.36 1.21 16 17 C -0.14 -1.05 6.16 -25.35 -0.16 -1.21 16 18 C 0.04 0.24 5.91 -2.18 -0.01 0.23 16 19 N -0.44 -3.71 5.42 -168.50 -0.91 -4.63 16 20 C 0.25 2.14 6.23 -154.64 -0.96 1.18 16 21 C 0.09 0.65 10.55 -17.11 -0.18 0.47 16 22 N -0.45 -4.17 10.50 -13.24 -0.14 -4.31 16 23 C 0.22 1.94 8.43 -17.22 -0.15 1.79 16 24 F -0.10 -0.91 17.29 2.25 0.04 -0.87 16 25 C 0.07 0.55 11.20 -17.30 -0.19 0.36 16 26 N -0.45 -4.12 8.66 -12.17 -0.11 -4.23 16 27 C 0.03 0.34 5.50 -2.09 -0.01 0.33 16 28 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 29 H 0.06 0.47 6.74 -51.93 -0.35 0.12 16 30 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 31 H 0.09 1.64 8.11 -51.92 -0.42 1.21 16 32 H 0.09 1.61 7.40 -51.91 -0.38 1.22 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.65 6.88 -51.93 -0.36 0.29 16 36 H 0.10 0.40 8.02 -51.93 -0.42 -0.02 16 37 H 0.06 0.33 7.97 -51.92 -0.41 -0.08 16 38 H 0.18 0.86 7.89 -52.49 -0.41 0.45 16 39 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.08 0.81 6.06 -51.93 -0.31 0.49 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -34.66 359.14 -8.67 -43.33 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.99 Total: -2.10 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.08 Total: -0.27 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.91 Total: -46.68 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.87 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.66 -8.67 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.634 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds