Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.76193 * 100.00049 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99640 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47282 * 59.99711 * 11 9 7 13 13 H 1.48497 * 109.47200 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47280 * 300.00084 * 11 9 7 15 15 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.29060 * 180.69638 * 15 2 1 17 17 C 1.54263 * 110.32328 * 302.82432 * 15 2 1 18 18 C 1.54378 * 105.05902 * 118.89397 * 17 15 2 19 19 N 1.48558 * 104.59852 * 23.85366 * 18 17 15 20 20 C 1.39154 * 111.00772 * 200.96014 * 19 18 17 21 21 C 1.39208 * 120.05580 * 300.13186 * 20 19 18 22 22 N 1.32011 * 119.93045 * 180.02562 * 21 20 19 23 23 C 1.32406 * 120.05497 * 359.97438 * 22 21 20 24 24 F 1.35103 * 119.93737 * 180.02562 * 23 22 21 25 25 C 1.38468 * 120.12038 * 0.02562 * 23 22 21 26 26 N 1.32214 * 120.06831 * 359.72589 * 25 23 22 27 27 C 1.48725 * 104.28781 * 320.57654 * 19 18 17 28 28 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 29 29 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 30 30 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 32 32 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 33 33 H 0.97010 * 119.99946 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.32767 * 237.78988 * 17 15 2 35 35 H 1.09000 * 110.32241 * 359.90463 * 17 15 2 36 36 H 1.09000 * 110.41190 * 142.63740 * 18 17 15 37 37 H 1.09010 * 110.41560 * 265.07606 * 18 17 15 38 38 H 1.07999 * 120.04098 * 359.96889 * 21 20 19 39 39 H 1.08004 * 119.96668 * 180.02562 * 25 23 22 40 40 H 1.09003 * 110.38612 * 280.64076 * 27 19 18 41 41 H 1.08999 * 110.50934 * 158.14053 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2264 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 -0.1141 7.8868 1.2162 13 1 1.5067 9.2222 0.0031 14 1 -0.1148 7.8875 -1.2087 15 6 2.1975 -1.2687 -0.0006 16 1 3.2718 -1.0848 0.0119 17 6 1.7863 -2.1253 1.2147 18 6 1.1848 -3.4132 0.6124 19 7 1.7901 -3.5120 -0.7406 20 6 1.0237 -4.3233 -1.5719 21 6 0.7962 -5.6536 -1.2310 22 7 0.0693 -6.4211 -2.0217 23 6 -0.4435 -5.9264 -3.1376 24 9 -1.1876 -6.7138 -3.9448 25 6 -0.2186 -4.6034 -3.4788 26 7 0.5046 -3.8290 -2.6880 27 6 1.8119 -2.1099 -1.2362 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.7583 2.5303 -0.8892 32 1 0.7589 2.5299 0.8908 33 1 3.5667 7.6331 0.0031 34 1 2.6590 -2.3634 1.8227 35 1 1.0407 -1.6011 1.8125 36 1 1.4587 -4.2788 1.2156 37 1 0.1005 -3.3281 0.5385 38 1 1.2148 -6.0578 -0.3211 39 1 -0.6385 -4.2022 -4.3895 40 1 0.8261 -1.8206 -1.6005 41 1 2.5578 -1.9944 -2.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102669856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -20.308474 kcal Electronic energy + Delta-G solvation = -26301.610195 eV Core-core repulsion = 22257.686423 eV Total energy + Delta-G solvation = -4043.923772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.16036 -42.52697 -41.18897 -39.51845 -36.55543 -35.43451 -34.57808 -33.38963 -31.08443 -30.25515 -29.27927 -27.76828 -27.60136 -26.04014 -25.06698 -22.66216 -22.37002 -20.44668 -19.62523 -19.24314 -19.17195 -18.73373 -18.22000 -17.48311 -16.90233 -16.86734 -16.72936 -16.54201 -15.98987 -15.69302 -15.52719 -15.28127 -14.99882 -14.67881 -14.53817 -14.33725 -14.20067 -13.77519 -13.52140 -13.41340 -13.18704 -13.13577 -12.97567 -12.86626 -12.72190 -12.64766 -12.52272 -12.42139 -11.83760 -11.72301 -11.12233 -11.08724 -10.89215 -10.45592 -10.26229 -9.74779 -9.43709 -8.66635 -8.33812 -6.12048 -0.54044 -0.20511 1.24744 1.44310 1.45164 1.53883 1.55615 1.93897 2.20288 2.27345 2.28282 2.46138 2.96068 3.00261 3.18908 3.26490 3.40779 3.56128 3.76130 3.81293 3.91353 4.03460 4.11034 4.21190 4.22873 4.32100 4.38837 4.47294 4.56766 4.60313 4.69313 4.84770 4.85605 4.89361 5.04179 5.11057 5.16653 5.42122 5.57690 5.64769 6.01027 6.19669 6.22250 6.42250 7.07310 7.11808 8.75047 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002060 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.031264 B =13592.127171 C =14215.065186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.602 5.602 3 C 0.534 3.466 4 O -0.563 6.563 5 C -0.123 4.123 6 S -0.153 6.153 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.013 3.987 10 N -0.911 5.911 11 Si 0.998 3.002 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.262 1.262 15 C 0.130 3.870 16 H 0.087 0.913 17 C -0.128 4.128 18 C 0.044 3.956 19 N -0.447 5.447 20 C 0.244 3.756 21 C 0.093 3.907 22 N -0.469 5.469 23 C 0.213 3.787 24 F -0.108 7.108 25 C 0.077 3.923 26 N -0.468 5.468 27 C 0.045 3.955 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.271 0.729 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.210 0.790 39 H 0.208 0.792 40 H 0.080 0.920 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.018 -26.568 -0.546 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.336 5.336 3 C 0.322 3.678 4 O -0.441 6.441 5 C -0.274 4.274 6 S 0.074 5.926 7 C -0.693 4.693 8 H 0.101 0.899 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.819 3.181 12 H -0.185 1.185 13 H -0.205 1.205 14 H -0.187 1.187 15 C 0.026 3.974 16 H 0.105 0.895 17 C -0.167 4.167 18 C -0.081 4.081 19 N -0.166 5.166 20 C 0.009 3.991 21 C -0.072 4.072 22 N -0.188 5.188 23 C 0.058 3.942 24 F -0.087 7.087 25 C -0.085 4.085 26 N -0.186 5.186 27 C -0.083 4.083 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.088 0.912 38 H 0.227 0.773 39 H 0.224 0.776 40 H 0.098 0.902 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.609 -26.696 -0.546 28.378 hybrid contribution -2.225 1.124 -0.599 2.564 sum -11.834 -25.572 -1.145 28.201 Atomic orbital electron populations 1.22045 0.77283 1.04879 1.03109 1.47821 1.08111 1.04168 1.73487 1.20147 0.87263 0.85412 0.74950 1.90684 1.15683 1.87364 1.50346 1.23376 1.02704 0.94861 1.06452 1.85602 1.12644 0.97325 1.97034 1.23153 0.94623 0.92603 1.58905 0.89857 1.26131 0.97579 1.01714 0.93783 1.70179 1.14118 1.22503 1.47949 0.85013 0.77625 0.75902 0.79521 1.18541 1.20518 1.18697 1.21810 0.97755 0.82538 0.95334 0.89509 1.22738 1.03094 0.94258 0.96611 1.23462 0.98076 1.00452 0.86100 1.62556 1.41165 1.09254 1.03588 1.21263 0.91135 0.94018 0.92727 1.23509 0.95012 0.88530 1.00157 1.67752 1.08617 1.38811 1.03632 1.19169 0.96058 0.89019 0.89999 1.91644 1.73079 1.74610 1.69404 1.23798 0.95363 0.88644 1.00697 1.68501 1.08197 1.36716 1.05232 1.23260 1.02972 0.85207 0.96854 0.91649 0.88450 0.89963 0.87590 0.87114 0.92023 0.88811 0.88527 0.85524 0.91156 0.77303 0.77583 0.90163 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.93 127.77 1.14 2.23 16 2 N -0.60 -14.69 2.80 -817.60 -2.29 -16.98 16 3 C 0.53 19.31 7.69 87.66 0.67 19.99 16 4 O -0.56 -25.66 15.22 -3.03 -0.05 -25.70 16 5 C -0.12 -4.75 4.71 71.24 0.34 -4.42 16 6 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 7 C -0.55 -30.69 9.50 67.96 0.65 -30.04 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 9 C 0.01 0.72 5.49 84.86 0.47 1.18 16 10 N -0.91 -55.67 13.22 21.65 0.29 -55.39 16 11 Si 1.00 43.03 29.55 68.60 2.03 45.05 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 15 C 0.13 2.75 3.46 45.89 0.16 2.91 16 16 H 0.09 2.42 6.96 -2.39 -0.02 2.40 16 17 C -0.13 -1.65 6.16 31.49 0.19 -1.45 16 18 C 0.04 0.38 5.91 86.45 0.51 0.89 16 19 N -0.45 -6.49 5.42 -687.01 -3.72 -10.21 16 20 C 0.24 3.64 6.23 132.96 0.83 4.47 16 21 C 0.09 1.17 10.55 84.90 0.90 2.06 16 22 N -0.47 -7.84 10.50 -195.81 -2.06 -9.90 16 23 C 0.21 3.39 8.43 84.66 0.71 4.10 16 24 F -0.11 -1.79 17.29 44.97 0.78 -1.01 16 25 C 0.08 1.05 11.20 84.69 0.95 2.00 16 26 N -0.47 -7.84 8.66 -192.41 -1.67 -9.51 16 27 C 0.05 0.86 5.50 86.42 0.48 1.33 16 28 H 0.06 0.98 7.90 -2.39 -0.02 0.96 16 29 H 0.10 0.98 6.74 -2.38 -0.02 0.96 16 30 H 0.08 1.31 6.44 -2.39 -0.02 1.30 16 31 H 0.11 3.74 8.11 -2.39 -0.02 3.72 16 32 H 0.11 3.80 7.40 -2.40 -0.02 3.78 16 33 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.10 6.88 -2.39 -0.02 1.08 16 36 H 0.13 0.44 8.02 -2.39 -0.02 0.42 16 37 H 0.07 0.49 7.97 -2.38 -0.02 0.47 16 38 H 0.21 1.23 7.89 -2.91 -0.02 1.21 16 39 H 0.21 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.08 1.50 6.06 -2.39 -0.01 1.49 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -79.09 359.14 1.21 -77.89 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.07 Total: 10.08 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 7.99 Total: 5.25 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -9.44 Total: -101.97 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.70 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.78 Total: -1.01 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -79.09 1.21 -77.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.578 kcal (2) G-P(sol) polarization free energy of solvation -79.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds