Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99502 * 2 1 4 4 O 1.21284 * 119.99824 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.00338 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47268 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00159 * 180.02562 * 6 5 3 8 8 H 1.08001 * 119.99678 * 359.97438 * 7 6 5 9 9 C 1.38791 * 120.00041 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00117 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99845 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47273 * 89.99810 * 11 9 7 13 13 H 1.48506 * 109.47125 * 209.99808 * 11 9 7 14 14 H 1.48496 * 109.47185 * 329.99568 * 11 9 7 15 15 C 1.46501 * 120.00297 * 179.97438 * 2 1 3 16 16 H 1.08994 * 110.86965 * 183.84610 * 15 2 1 17 17 C 1.55136 * 110.98909 * 59.99901 * 15 2 1 18 18 C 1.54323 * 103.01716 * 206.21543 * 17 15 2 19 19 N 1.47444 * 107.23099 * 22.28824 * 18 17 15 20 20 C 1.38540 * 110.99774 * 123.25605 * 19 18 17 21 21 N 1.32448 * 119.18717 * 239.88687 * 20 19 18 22 22 C 1.32295 * 120.76636 * 179.97438 * 21 20 19 23 23 C 1.38785 * 119.16774 * 0.02562 * 22 21 20 24 24 F 1.35102 * 120.74594 * 179.97438 * 23 22 21 25 25 C 1.38776 * 118.50802 * 359.97438 * 23 22 21 26 26 N 1.32302 * 119.17074 * 0.02562 * 25 23 22 27 27 C 1.47837 * 108.56777 * 0.98618 * 19 18 17 28 28 H 1.09007 * 109.47077 * 269.99814 * 1 2 3 29 29 H 1.08992 * 109.47574 * 30.00141 * 1 2 3 30 30 H 1.09007 * 109.46842 * 150.00789 * 1 2 3 31 31 H 1.08994 * 109.46742 * 300.00203 * 5 3 2 32 32 H 1.09002 * 109.46946 * 60.00219 * 5 3 2 33 33 H 0.97006 * 119.99939 * 179.97438 * 10 9 7 34 34 H 1.09002 * 110.70481 * 87.83681 * 17 15 2 35 35 H 1.08994 * 110.70691 * 324.60062 * 17 15 2 36 36 H 1.08994 * 109.89002 * 262.87764 * 18 17 15 37 37 H 1.09000 * 109.88354 * 141.68802 * 18 17 15 38 38 H 1.08004 * 120.41540 * 180.27721 * 22 21 20 39 39 H 1.08001 * 120.41750 * 180.02562 * 25 23 22 40 40 H 1.09005 * 110.37522 * 94.73662 * 27 19 18 41 41 H 1.09007 * 110.37298 * 217.07534 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4724 -0.0006 6 16 2.5613 3.8482 -0.0012 7 6 1.4412 5.2083 -0.0010 8 1 0.3759 5.0305 -0.0011 9 6 1.9279 6.5081 -0.0019 10 7 3.2262 6.7247 -0.0024 11 14 0.7403 7.9500 -0.0010 12 1 0.4271 8.3325 1.3993 13 1 1.3608 9.1028 -0.7021 14 1 -0.5110 7.5611 -0.6996 15 6 2.1976 -1.2687 0.0006 16 1 3.2717 -1.0968 0.0688 17 6 1.8483 -2.1126 -1.2534 18 6 2.1108 -3.5589 -0.7833 19 7 2.0314 -3.5607 0.6890 20 6 1.0837 -4.4680 1.1339 21 7 0.0605 -4.0326 1.8535 22 6 -0.8628 -4.8714 2.2939 23 6 -0.7486 -6.2216 1.9935 24 9 -1.6729 -7.1063 2.4273 25 6 0.3363 -6.6424 1.2374 26 7 1.2231 -5.7494 0.8292 27 6 1.7095 -2.1917 1.1448 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5137 31 1 0.7589 2.5298 -0.8908 32 1 0.7582 2.5303 0.8892 33 1 3.5663 7.6332 -0.0034 34 1 2.5017 -1.8536 -2.0865 35 1 0.8017 -1.9805 -1.5276 36 1 3.1033 -3.8778 -1.1016 37 1 1.3543 -4.2261 -1.1962 38 1 -1.6972 -4.5096 2.8764 39 1 0.4554 -7.6858 0.9853 40 1 0.6344 -2.0825 1.2881 41 1 2.2413 -1.9645 2.0688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102669908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = 7.366048 kcal Electronic energy + Delta-G solvation = -26307.489638 eV Core-core repulsion = 22264.765923 eV Total energy + Delta-G solvation = -4042.723715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.48661 -41.86281 -40.02706 -38.44987 -35.32077 -34.48889 -32.63805 -32.44241 -30.10365 -29.63052 -28.18465 -26.84785 -25.53060 -25.36636 -24.27941 -21.77384 -21.51349 -19.35303 -18.64236 -18.26706 -17.92502 -17.75006 -17.07188 -16.61116 -16.03141 -15.82141 -15.40159 -15.03234 -14.88762 -14.81382 -14.48875 -14.07580 -13.95918 -13.64013 -13.58953 -13.29186 -13.04469 -12.64109 -12.46072 -12.30900 -12.23911 -12.14125 -12.00641 -11.62906 -11.54554 -11.07702 -11.04088 -10.93333 -10.77296 -10.37781 -9.82567 -9.71780 -9.43544 -9.07925 -8.81900 -8.61354 -8.24648 -6.51884 -6.22912 -3.93753 0.18204 0.37216 2.48132 2.90878 2.95910 3.06240 3.21344 3.24515 3.29091 3.32033 3.46225 3.57546 4.02856 4.14285 4.17917 4.18879 4.33351 4.46842 4.66082 4.81282 4.89598 4.98607 5.06532 5.10768 5.12262 5.27826 5.34504 5.49724 5.52635 5.56127 5.66387 5.69515 5.73710 5.87203 5.92985 6.00306 6.08076 6.10417 6.55959 6.62518 7.43978 7.46932 7.58244 8.33746 8.48012 9.22376 10.84454 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.002041 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.340367 B =13717.013828 C =14413.085810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.536 3.464 4 O -0.512 6.512 5 C -0.149 4.149 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.136 3.864 16 H 0.121 0.879 17 C -0.156 4.156 18 C 0.063 3.937 19 N -0.448 5.448 20 C 0.485 3.515 21 N -0.524 5.524 22 C 0.155 3.845 23 C -0.043 4.043 24 F -0.123 7.123 25 C 0.154 3.846 26 N -0.502 5.502 27 C 0.035 3.965 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.094 0.906 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 -27.226 0.975 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.350 5.350 3 C 0.325 3.675 4 O -0.386 6.386 5 C -0.300 4.300 6 S 0.166 5.834 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.030 3.970 16 H 0.139 0.861 17 C -0.195 4.195 18 C -0.063 4.063 19 N -0.167 5.167 20 C 0.129 3.871 21 N -0.243 5.243 22 C -0.014 4.014 23 C -0.069 4.069 24 F -0.101 7.101 25 C -0.015 4.015 26 N -0.219 5.219 27 C -0.093 4.093 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.198 0.802 39 H 0.199 0.801 40 H 0.112 0.888 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.264 -26.529 0.822 27.518 hybrid contribution -3.701 0.189 0.306 3.718 sum -10.965 -26.340 1.128 28.553 Atomic orbital electron populations 1.21771 0.79708 1.03052 1.02049 1.47693 1.06693 1.04883 1.75682 1.20390 0.87951 0.84432 0.74774 1.90701 1.13709 1.86652 1.47531 1.23558 1.04581 0.97031 1.04821 1.85415 1.07983 0.93318 1.96710 1.22847 0.94288 0.92184 1.59002 0.90936 1.24993 0.95679 0.98388 0.94542 1.70018 1.11733 1.21675 1.46797 0.86169 0.80250 0.80722 0.78357 1.20260 1.20755 1.19711 1.22048 0.99261 0.82899 0.92769 0.86107 1.23236 1.03129 0.93727 0.99426 1.22818 1.04028 0.97088 0.82340 1.60034 1.38018 1.06578 1.12117 1.21271 0.86269 0.88829 0.90698 1.68388 1.02508 1.38318 1.15073 1.23320 0.96660 0.87660 0.93711 1.19352 0.92853 0.89883 1.04780 1.91549 1.63656 1.67073 1.87871 1.23336 0.87279 1.00617 0.90282 1.68110 1.28047 1.01297 1.24432 1.23524 1.03325 0.83232 0.99215 0.92369 0.90302 0.91605 0.89176 0.89126 0.92170 0.88953 0.90482 0.88313 0.91419 0.80168 0.80055 0.88779 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 8.86 59.85 0.53 1.31 16 2 N -0.61 -8.23 2.91 -171.49 -0.50 -8.73 16 3 C 0.54 9.84 7.69 -10.98 -0.08 9.75 16 4 O -0.51 -11.35 15.24 5.55 0.08 -11.27 16 5 C -0.15 -2.95 4.71 36.01 0.17 -2.78 16 6 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 7 C -0.53 -15.05 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 9 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 11 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.14 1.61 3.44 -65.79 -0.23 1.38 16 16 H 0.12 1.70 7.02 -51.93 -0.36 1.33 16 17 C -0.16 -1.44 6.51 -24.91 -0.16 -1.60 16 18 C 0.06 0.55 6.65 -2.83 -0.02 0.54 16 19 N -0.45 -4.72 5.25 -172.16 -0.90 -5.63 16 20 C 0.48 5.01 6.87 -322.72 -2.22 2.80 16 21 N -0.52 -4.99 8.16 -13.87 -0.11 -5.10 16 22 C 0.16 1.10 11.29 -17.15 -0.19 0.91 16 23 C -0.04 -0.29 7.38 -39.18 -0.29 -0.58 16 24 F -0.12 -0.83 17.30 2.25 0.04 -0.79 16 25 C 0.15 1.07 11.29 -17.15 -0.19 0.87 16 26 N -0.50 -4.80 9.95 -13.87 -0.14 -4.94 16 27 C 0.03 0.37 5.91 -2.30 -0.01 0.36 16 28 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 29 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 30 H 0.07 0.53 6.41 -51.93 -0.33 0.20 16 31 H 0.09 1.64 7.40 -51.92 -0.38 1.25 16 32 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.66 6.39 -51.93 -0.33 0.33 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.57 7.38 -51.93 -0.38 0.18 16 38 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.18 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.09 0.99 5.39 -51.93 -0.28 0.71 16 41 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -34.78 358.36 -10.04 -44.83 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.91 Total: -1.05 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.50 Total: 0.18 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.92 Total: -49.63 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.04 Total: -0.79 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.78 -10.04 -44.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.193 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds