Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99502 * 2 1 4 4 O 1.21284 * 119.99824 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.00338 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47268 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00159 * 180.02562 * 6 5 3 8 8 H 1.08001 * 119.99678 * 359.97438 * 7 6 5 9 9 C 1.38791 * 120.00041 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00117 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99845 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47273 * 89.99810 * 11 9 7 13 13 H 1.48506 * 109.47125 * 209.99808 * 11 9 7 14 14 H 1.48496 * 109.47185 * 329.99568 * 11 9 7 15 15 C 1.46501 * 120.00297 * 179.97438 * 2 1 3 16 16 H 1.08994 * 110.86965 * 183.84610 * 15 2 1 17 17 C 1.55136 * 110.98909 * 59.99901 * 15 2 1 18 18 C 1.54323 * 103.01716 * 206.21543 * 17 15 2 19 19 N 1.47444 * 107.23099 * 22.28824 * 18 17 15 20 20 C 1.38540 * 110.99774 * 123.25605 * 19 18 17 21 21 N 1.32448 * 119.18717 * 239.88687 * 20 19 18 22 22 C 1.32295 * 120.76636 * 179.97438 * 21 20 19 23 23 C 1.38785 * 119.16774 * 0.02562 * 22 21 20 24 24 F 1.35102 * 120.74594 * 179.97438 * 23 22 21 25 25 C 1.38776 * 118.50802 * 359.97438 * 23 22 21 26 26 N 1.32302 * 119.17074 * 0.02562 * 25 23 22 27 27 C 1.47837 * 108.56777 * 0.98618 * 19 18 17 28 28 H 1.09007 * 109.47077 * 269.99814 * 1 2 3 29 29 H 1.08992 * 109.47574 * 30.00141 * 1 2 3 30 30 H 1.09007 * 109.46842 * 150.00789 * 1 2 3 31 31 H 1.08994 * 109.46742 * 300.00203 * 5 3 2 32 32 H 1.09002 * 109.46946 * 60.00219 * 5 3 2 33 33 H 0.97006 * 119.99939 * 179.97438 * 10 9 7 34 34 H 1.09002 * 110.70481 * 87.83681 * 17 15 2 35 35 H 1.08994 * 110.70691 * 324.60062 * 17 15 2 36 36 H 1.08994 * 109.89002 * 262.87764 * 18 17 15 37 37 H 1.09000 * 109.88354 * 141.68802 * 18 17 15 38 38 H 1.08004 * 120.41540 * 180.27721 * 22 21 20 39 39 H 1.08001 * 120.41750 * 180.02562 * 25 23 22 40 40 H 1.09005 * 110.37522 * 94.73662 * 27 19 18 41 41 H 1.09007 * 110.37298 * 217.07534 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4724 -0.0006 6 16 2.5613 3.8482 -0.0012 7 6 1.4412 5.2083 -0.0010 8 1 0.3759 5.0305 -0.0011 9 6 1.9279 6.5081 -0.0019 10 7 3.2262 6.7247 -0.0024 11 14 0.7403 7.9500 -0.0010 12 1 0.4271 8.3325 1.3993 13 1 1.3608 9.1028 -0.7021 14 1 -0.5110 7.5611 -0.6996 15 6 2.1976 -1.2687 0.0006 16 1 3.2717 -1.0968 0.0688 17 6 1.8483 -2.1126 -1.2534 18 6 2.1108 -3.5589 -0.7833 19 7 2.0314 -3.5607 0.6890 20 6 1.0837 -4.4680 1.1339 21 7 0.0605 -4.0326 1.8535 22 6 -0.8628 -4.8714 2.2939 23 6 -0.7486 -6.2216 1.9935 24 9 -1.6729 -7.1063 2.4273 25 6 0.3363 -6.6424 1.2374 26 7 1.2231 -5.7494 0.8292 27 6 1.7095 -2.1917 1.1448 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5137 31 1 0.7589 2.5298 -0.8908 32 1 0.7582 2.5303 0.8892 33 1 3.5663 7.6332 -0.0034 34 1 2.5017 -1.8536 -2.0865 35 1 0.8017 -1.9805 -1.5276 36 1 3.1033 -3.8778 -1.1016 37 1 1.3543 -4.2261 -1.1962 38 1 -1.6972 -4.5096 2.8764 39 1 0.4554 -7.6858 0.9853 40 1 0.6344 -2.0825 1.2881 41 1 2.2413 -1.9645 2.0688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102669908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -15.111730 kcal Electronic energy + Delta-G solvation = -26308.464347 eV Core-core repulsion = 22264.765923 eV Total energy + Delta-G solvation = -4043.698424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.02189 -42.53169 -41.13053 -39.49596 -36.47799 -35.09607 -34.57436 -33.46458 -31.24744 -30.37976 -29.31256 -27.83153 -27.62047 -25.99460 -24.97746 -22.61533 -22.44498 -20.52028 -19.64912 -19.26807 -19.00015 -18.53358 -18.26738 -17.36105 -16.98845 -16.86488 -16.70536 -16.68192 -16.06713 -15.56661 -15.49321 -15.11342 -14.83166 -14.56920 -14.53490 -14.40564 -14.19876 -14.15519 -13.55343 -13.28464 -13.16112 -13.12531 -12.92111 -12.87758 -12.86554 -12.60376 -12.56280 -12.19303 -11.78527 -11.70354 -11.13331 -11.03903 -10.92247 -10.32433 -10.25363 -9.75573 -9.48019 -8.66179 -8.33566 -6.11715 -0.41860 -0.17097 1.23552 1.43312 1.44205 1.53087 1.55749 1.81685 2.19236 2.28389 2.43528 2.77589 2.88588 3.00636 3.22946 3.33715 3.50196 3.61167 3.66099 3.73801 3.79143 3.92436 4.05356 4.17080 4.21841 4.28899 4.47653 4.51566 4.57861 4.61734 4.67605 4.79275 4.84835 4.95537 5.04144 5.13380 5.22708 5.42970 5.43366 5.52771 5.97497 6.19981 6.22057 6.83981 7.07711 7.10197 8.75558 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.002041 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.340367 B =13717.013828 C =14413.085810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.599 5.599 3 C 0.535 3.465 4 O -0.562 6.562 5 C -0.122 4.122 6 S -0.153 6.153 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.012 3.988 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.257 1.257 15 C 0.131 3.869 16 H 0.092 0.908 17 C -0.144 4.144 18 C 0.069 3.931 19 N -0.461 5.461 20 C 0.470 3.530 21 N -0.540 5.540 22 C 0.154 3.846 23 C -0.037 4.037 24 F -0.120 7.120 25 C 0.155 3.845 26 N -0.520 5.520 27 C 0.048 3.952 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.271 0.729 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.209 0.791 39 H 0.212 0.788 40 H 0.103 0.897 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.715 -28.697 0.880 31.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.332 5.332 3 C 0.323 3.677 4 O -0.440 6.440 5 C -0.273 4.273 6 S 0.074 5.926 7 C -0.691 4.691 8 H 0.102 0.898 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.181 1.181 15 C 0.026 3.974 16 H 0.111 0.889 17 C -0.183 4.183 18 C -0.057 4.057 19 N -0.181 5.181 20 C 0.114 3.886 21 N -0.259 5.259 22 C -0.014 4.014 23 C -0.062 4.062 24 F -0.099 7.099 25 C -0.013 4.013 26 N -0.238 5.238 27 C -0.080 4.080 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.225 0.775 39 H 0.228 0.772 40 H 0.120 0.880 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.613 -28.066 0.732 30.015 hybrid contribution -2.756 0.412 0.382 2.812 sum -13.368 -27.655 1.113 30.737 Atomic orbital electron populations 1.22081 0.77053 1.04655 1.03510 1.47609 1.08209 1.03882 1.73484 1.20166 0.87268 0.85328 0.74917 1.90687 1.15672 1.87344 1.50302 1.23372 1.02697 0.94663 1.06592 1.85615 1.12648 0.97327 1.97032 1.23185 0.94644 0.92565 1.58749 0.89802 1.26134 0.97585 1.01730 0.93809 1.70189 1.14117 1.22433 1.48052 0.84953 0.77929 0.76327 0.78765 1.19365 1.20422 1.18061 1.22078 0.97726 0.82527 0.95119 0.88941 1.23163 1.03943 0.93243 0.97909 1.22809 1.04544 0.96715 0.81620 1.60021 1.38865 1.06262 1.12956 1.21299 0.86714 0.89102 0.91481 1.68376 1.02931 1.39094 1.15539 1.23777 0.96662 0.87706 0.93257 1.19345 0.92695 0.89858 1.04315 1.91562 1.63556 1.66996 1.87790 1.23827 0.86567 1.01499 0.89455 1.68125 1.29036 1.01288 1.25345 1.23300 1.03344 0.83416 0.97892 0.90955 0.89858 0.88913 0.87105 0.87320 0.92040 0.88912 0.89000 0.88026 0.90529 0.77489 0.77156 0.87955 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 8.86 127.77 1.13 2.31 16 2 N -0.60 -15.43 2.91 -814.86 -2.37 -17.80 16 3 C 0.54 19.76 7.69 87.66 0.67 20.43 16 4 O -0.56 -26.03 15.24 -3.04 -0.05 -26.07 16 5 C -0.12 -4.77 4.71 71.24 0.34 -4.44 16 6 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 7 C -0.54 -30.71 9.50 67.95 0.65 -30.07 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 C 0.01 0.68 5.49 84.86 0.47 1.15 16 10 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 11 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 14 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 15 C 0.13 3.05 3.44 46.37 0.16 3.21 16 16 H 0.09 2.74 7.02 -2.39 -0.02 2.72 16 17 C -0.14 -2.44 6.51 31.78 0.21 -2.23 16 18 C 0.07 1.12 6.65 86.65 0.58 1.70 16 19 N -0.46 -9.34 5.25 -698.60 -3.67 -13.01 16 20 C 0.47 9.03 6.87 261.46 1.80 10.82 16 21 N -0.54 -9.25 8.16 -197.78 -1.61 -10.86 16 22 C 0.15 1.80 11.29 84.75 0.96 2.76 16 23 C -0.04 -0.41 7.38 22.53 0.17 -0.24 16 24 F -0.12 -1.31 17.30 44.97 0.78 -0.53 16 25 C 0.16 1.78 11.29 84.75 0.96 2.73 16 26 N -0.52 -9.07 9.95 -197.79 -1.97 -11.04 16 27 C 0.05 1.01 5.91 86.77 0.51 1.52 16 28 H 0.07 1.11 8.09 -2.38 -0.02 1.09 16 29 H 0.08 1.40 6.44 -2.39 -0.02 1.39 16 30 H 0.09 1.14 6.41 -2.38 -0.02 1.13 16 31 H 0.11 3.86 7.40 -2.40 -0.02 3.84 16 32 H 0.11 3.84 8.11 -2.39 -0.02 3.82 16 33 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.30 6.39 -2.39 -0.02 1.29 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.13 7.38 -2.39 -0.02 1.11 16 38 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.10 1.96 5.39 -2.38 -0.01 1.95 16 41 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -78.48 358.36 1.92 -76.56 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.07 Total: 13.07 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 8.58 Total: 9.66 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -9.33 Total: -108.30 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.78 Total: -0.53 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -78.48 1.92 -76.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.451 kcal (2) G-P(sol) polarization free energy of solvation -78.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds