Wall clock time and date at job start Sat Apr 11 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34771 * 120.00431 * 2 1 4 4 O 1.21284 * 120.00353 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99952 * 359.97438 * 3 2 1 6 6 S 1.80990 * 109.47384 * 180.02562 * 5 3 2 7 7 C 1.76199 * 100.00278 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.38797 * 120.00452 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00292 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99660 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99524 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99704 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99697 * 11 9 7 15 15 C 1.46504 * 119.99898 * 179.97438 * 2 1 3 16 16 H 1.08997 * 110.28981 * 179.32841 * 15 2 1 17 17 C 1.54262 * 110.32706 * 301.45603 * 15 2 1 18 18 C 1.54370 * 105.06387 * 118.89431 * 17 15 2 19 19 N 1.48558 * 104.59386 * 23.85334 * 18 17 15 20 20 C 1.38581 * 110.99930 * 200.96080 * 19 18 17 21 21 C 1.39457 * 120.51421 * 59.59904 * 20 19 18 22 22 C 1.38471 * 118.31088 * 179.76028 * 21 20 19 23 23 F 1.35101 * 120.43344 * 180.26033 * 22 21 20 24 24 N 1.32784 * 119.13872 * 0.51148 * 22 21 20 25 25 C 1.31763 * 120.95975 * 359.74835 * 24 22 21 26 26 N 1.31752 * 121.86535 * 359.97438 * 25 24 22 27 27 C 1.48558 * 104.22349 * 320.51632 * 19 18 17 28 28 H 1.08997 * 109.47000 * 90.00273 * 1 2 3 29 29 H 1.08999 * 109.47159 * 210.00333 * 1 2 3 30 30 H 1.08996 * 109.46926 * 330.00108 * 1 2 3 31 31 H 1.09001 * 109.47050 * 59.99941 * 5 3 2 32 32 H 1.08999 * 109.47014 * 300.00996 * 5 3 2 33 33 H 0.96997 * 119.99773 * 180.02562 * 10 9 7 34 34 H 1.09003 * 110.32173 * 237.79581 * 17 15 2 35 35 H 1.09008 * 110.31760 * 359.97438 * 17 15 2 36 36 H 1.08998 * 110.41395 * 142.63522 * 18 17 15 37 37 H 1.09003 * 110.41413 * 265.07996 * 18 17 15 38 38 H 1.08000 * 120.84766 * 359.97438 * 21 20 19 39 39 H 1.08003 * 119.06816 * 179.97438 * 25 24 22 40 40 H 1.08999 * 110.41189 * 280.70468 * 27 19 18 41 41 H 1.09003 * 110.41266 * 158.25804 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5616 3.8479 -0.0012 7 6 1.4417 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9284 6.5080 -0.0009 10 7 1.0916 7.5242 -0.0002 11 14 3.7709 6.8153 -0.0015 12 1 4.2598 6.8964 1.3984 13 1 4.0595 8.0929 -0.7014 14 1 4.4584 5.7009 -0.7021 15 6 2.1975 -1.2688 0.0006 16 1 3.2718 -1.0850 -0.0115 17 6 1.8116 -2.1097 1.2349 18 6 1.1979 -3.4051 0.6619 19 7 1.7751 -3.5213 -0.7020 20 6 0.9949 -4.3397 -1.5033 21 6 -0.3397 -4.0216 -1.7533 22 6 -1.0758 -4.8686 -2.5646 23 9 -2.3708 -4.5988 -2.8393 24 7 -0.4938 -5.9522 -3.0649 25 6 0.7684 -6.2254 -2.8038 26 7 1.5060 -5.4438 -2.0417 27 6 1.7844 -2.1269 -1.2144 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7585 2.5302 0.8892 32 1 0.7591 2.5298 -0.8907 33 1 1.4319 8.4325 -0.0005 34 1 2.6969 -2.3401 1.8278 35 1 1.0775 -1.5782 1.8406 36 1 1.4844 -4.2630 1.2703 37 1 0.1124 -3.3207 0.6094 38 1 -0.7869 -3.1354 -1.3279 39 1 1.2110 -7.1153 -3.2266 40 1 0.7907 -1.8425 -1.5605 41 1 2.5125 -2.0224 -2.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102670256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:29 Heat of formation + Delta-G solvation = 7.455281 kcal Electronic energy + Delta-G solvation = -26512.651021 eV Core-core repulsion = 22469.931176 eV Total energy + Delta-G solvation = -4042.719845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.76559 -41.89878 -40.31871 -38.74462 -35.68028 -33.95222 -32.75640 -32.48093 -30.61509 -29.84515 -28.41217 -26.93224 -25.66573 -25.38633 -24.31838 -22.10989 -21.58165 -19.42463 -19.01027 -18.74434 -17.82055 -17.15223 -16.89343 -16.82522 -16.39508 -15.98496 -15.56408 -15.26430 -15.18240 -15.01084 -14.91726 -14.41110 -14.24782 -13.82955 -13.48302 -13.26692 -13.12451 -12.90719 -12.80190 -12.53232 -12.31369 -12.00349 -11.88415 -11.64713 -11.30278 -11.26998 -11.04450 -10.94082 -10.65365 -10.29766 -10.22762 -9.90100 -9.60513 -9.32260 -9.04528 -8.81743 -8.55036 -6.97600 -6.33105 -4.05575 0.05180 0.20563 2.42586 2.66745 2.73771 2.78378 2.92389 3.12422 3.30030 3.47202 3.51996 3.53106 3.87715 4.07137 4.21899 4.28263 4.29378 4.42380 4.55813 4.60037 4.67190 4.79649 4.85277 4.86842 5.01291 5.05906 5.14649 5.17762 5.27771 5.39663 5.46816 5.51737 5.62484 5.66239 5.71606 5.88824 5.92287 6.02364 6.42798 6.43549 7.24750 7.36491 7.89757 8.28412 8.36822 9.12985 10.76015 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.002229 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.479468 B =12555.963476 C =13115.668472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.618 5.618 3 C 0.535 3.465 4 O -0.513 6.513 5 C -0.121 4.121 6 S -0.142 6.142 7 C -0.522 4.522 8 H 0.088 0.912 9 C 0.096 3.904 10 N -0.879 5.879 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.142 3.858 16 H 0.121 0.879 17 C -0.134 4.134 18 C 0.041 3.959 19 N -0.469 5.469 20 C 0.384 3.616 21 C -0.284 4.284 22 C 0.369 3.631 23 F -0.097 7.097 24 N -0.556 5.556 25 C 0.348 3.652 26 N -0.505 5.505 27 C 0.030 3.970 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.271 0.729 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.159 0.841 39 H 0.215 0.785 40 H 0.063 0.937 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -27.393 -1.188 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.354 5.354 3 C 0.323 3.677 4 O -0.386 6.386 5 C -0.272 4.272 6 S 0.084 5.916 7 C -0.669 4.669 8 H 0.106 0.894 9 C -0.113 4.113 10 N -0.516 5.516 11 Si 0.681 3.319 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.159 1.159 15 C 0.037 3.963 16 H 0.139 0.861 17 C -0.173 4.173 18 C -0.085 4.085 19 N -0.192 5.192 20 C 0.145 3.855 21 C -0.311 4.311 22 C 0.208 3.792 23 F -0.076 7.076 24 N -0.277 5.277 25 C 0.060 3.940 26 N -0.221 5.221 27 C -0.098 4.098 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.177 0.823 39 H 0.231 0.769 40 H 0.081 0.919 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.102 -28.189 -1.567 28.311 hybrid contribution -2.476 1.436 0.142 2.866 sum -4.578 -26.753 -1.425 27.180 Atomic orbital electron populations 1.21811 0.79727 1.03527 1.01967 1.47883 1.06705 1.05118 1.75689 1.20367 0.87959 0.84539 0.74866 1.90705 1.13670 1.86674 1.47574 1.23317 1.03147 0.95035 1.05668 1.84822 1.11834 0.97499 1.97418 1.22289 0.94813 0.90865 1.58950 0.89392 1.24716 0.98572 0.94882 0.93144 1.69935 1.34825 0.98907 1.47926 0.86736 0.85294 0.79868 0.79961 1.19182 1.19920 1.15909 1.21653 0.99543 0.82560 0.92537 0.86135 1.22762 1.02571 0.94097 0.97911 1.23331 0.97543 1.00068 0.87540 1.62298 1.46428 1.08469 1.01975 1.20027 0.86442 0.89870 0.89133 1.23223 0.97639 1.04772 1.05417 1.18238 0.80079 0.90065 0.90796 1.91706 1.32257 1.92190 1.91472 1.67894 1.14748 1.18926 1.26137 1.24964 0.83557 0.96813 0.88662 1.68213 1.39062 1.04574 1.10258 1.23702 1.02489 0.84537 0.99044 0.92544 0.91397 0.89938 0.88426 0.88442 0.91900 0.89210 0.89488 0.88711 0.92635 0.82334 0.76891 0.91873 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 8.87 59.85 0.53 1.12 16 2 N -0.62 -7.08 2.79 -172.35 -0.48 -7.56 16 3 C 0.53 8.83 7.69 -10.99 -0.08 8.74 16 4 O -0.51 -10.37 15.22 5.55 0.08 -10.29 16 5 C -0.12 -2.21 4.71 36.01 0.17 -2.04 16 6 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 7 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 8 H 0.09 2.57 8.03 -52.48 -0.42 2.15 16 9 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 10 N -0.88 -26.11 13.97 55.49 0.78 -25.33 16 11 Si 0.86 21.42 27.74 -169.99 -4.71 16.70 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 15 C 0.14 1.42 3.46 -66.55 -0.23 1.19 16 16 H 0.12 1.49 6.96 -51.93 -0.36 1.13 16 17 C -0.13 -1.00 6.17 -25.35 -0.16 -1.15 16 18 C 0.04 0.27 6.36 -2.19 -0.01 0.26 16 19 N -0.47 -4.01 5.46 -168.64 -0.92 -4.93 16 20 C 0.38 3.34 5.94 -154.75 -0.92 2.43 16 21 C -0.28 -2.12 8.12 -39.04 -0.32 -2.44 16 22 C 0.37 3.19 8.50 -17.05 -0.14 3.04 16 23 F -0.10 -0.86 17.30 2.25 0.04 -0.82 16 24 N -0.56 -4.94 10.45 -14.98 -0.16 -5.10 16 25 C 0.35 2.55 12.28 -92.22 -1.13 1.42 16 26 N -0.51 -4.63 10.47 -13.84 -0.14 -4.78 16 27 C 0.03 0.26 5.95 -2.18 -0.01 0.25 16 28 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16 29 H 0.07 0.38 6.84 -51.93 -0.35 0.02 16 30 H 0.08 0.69 6.44 -51.93 -0.33 0.36 16 31 H 0.10 1.64 7.40 -51.92 -0.38 1.25 16 32 H 0.10 1.66 8.11 -51.92 -0.42 1.24 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.60 6.98 -51.92 -0.36 0.24 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.29 6.78 -51.93 -0.35 -0.06 16 38 H 0.16 0.88 6.86 -52.49 -0.36 0.52 16 39 H 0.21 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.06 0.49 5.27 -51.93 -0.27 0.22 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -34.41 354.84 -9.15 -43.55 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.88 Total: -2.43 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.10 Total: 1.12 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.93 Total: -47.70 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 0.04 Total: -0.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.41 -9.15 -43.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102670256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.009 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds