Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81407 * 103.00004 * 2 1 4 4 C 1.53002 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47219 * 305.00010 * 4 3 2 6 6 C 1.52996 * 109.46933 * 65.00217 * 4 3 2 7 7 C 1.50701 * 109.46600 * 185.00069 * 4 3 2 8 8 O 1.21276 * 120.00299 * 333.07714 * 7 4 3 9 9 N 1.34782 * 119.99448 * 153.07309 * 7 4 3 10 10 C 1.48152 * 127.83476 * 174.63383 * 9 7 4 11 11 C 1.54392 * 104.61481 * 219.60953 * 10 9 7 12 12 H 1.09001 * 110.34303 * 95.00646 * 11 10 9 13 13 C 1.52998 * 110.33972 * 217.26118 * 11 10 9 14 14 F 1.39901 * 109.47349 * 175.53788 * 13 11 10 15 15 F 1.39899 * 109.47399 * 295.54020 * 13 11 10 16 16 F 1.39901 * 109.47090 * 55.54063 * 13 11 10 17 17 C 1.54283 * 104.96094 * 336.13457 * 11 10 9 18 18 H 1.09000 * 110.43084 * 241.08717 * 17 11 10 19 19 N 1.46498 * 110.34484 * 118.87380 * 17 11 10 20 20 C 1.36933 * 120.00377 * 158.00742 * 19 17 11 21 21 H 1.07998 * 119.99751 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00172 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00076 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00135 * 180.27552 * 22 20 19 25 25 H 1.48495 * 109.47104 * 179.72080 * 24 22 20 26 26 H 1.48496 * 109.46867 * 299.72357 * 24 22 20 27 27 H 1.48508 * 109.47060 * 59.72136 * 24 22 20 28 28 C 1.48143 * 127.84089 * 354.66458 * 9 7 4 29 29 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47133 * 299.99793 * 1 2 3 31 31 H 1.09000 * 109.47182 * 59.99839 * 1 2 3 32 32 H 1.09001 * 109.46496 * 60.00341 * 3 2 1 33 33 H 1.08991 * 109.46969 * 300.00190 * 3 2 1 34 34 H 1.09001 * 109.47031 * 64.33315 * 6 4 3 35 35 H 1.08997 * 109.47090 * 184.32895 * 6 4 3 36 36 H 1.08997 * 109.47223 * 304.33533 * 6 4 3 37 37 H 1.09000 * 110.40503 * 338.39185 * 10 9 7 38 38 H 1.09002 * 110.40413 * 100.70662 * 10 9 7 39 39 H 0.97003 * 119.99451 * 338.00511 * 19 17 11 40 40 H 0.97000 * 120.00139 * 180.02562 * 23 22 20 41 41 H 1.09000 * 110.40805 * 21.60800 * 28 9 7 42 42 H 1.09002 * 110.40457 * 259.17347 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7424 1.9400 0.0006 5 1 4.1694 1.3953 0.8427 6 6 4.3183 1.3916 -1.3064 7 6 4.0819 3.4030 0.1245 8 8 3.3017 4.2423 -0.2726 9 7 5.2526 3.7787 0.6767 10 6 5.8082 5.1477 0.7855 11 6 7.3168 4.9794 0.5036 12 1 7.5298 5.1733 -0.5477 13 6 8.1323 5.9184 1.3947 14 9 9.4967 5.6797 1.1983 15 9 7.8390 7.2460 1.0649 16 9 7.8069 5.6882 2.7357 17 6 7.6251 3.5081 0.8508 18 1 8.3581 3.4527 1.6556 19 7 8.1150 2.7974 -0.3329 20 6 8.8587 1.6568 -0.1877 21 1 9.0837 1.2809 0.7995 22 6 9.3233 0.9837 -1.3092 23 7 9.0486 1.4415 -2.5122 24 14 10.3313 -0.5765 -1.1113 25 1 10.6976 -1.1024 -2.4508 26 1 11.5659 -0.2741 -0.3436 27 1 9.5315 -1.5934 -0.3820 28 6 6.2759 2.9162 1.3121 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8032 2.2371 0.8901 33 1 1.8032 2.2371 -0.8899 34 1 3.9508 1.9859 -2.1430 35 1 5.4066 1.4438 -1.2741 36 1 4.0079 0.3545 -1.4334 37 1 5.3534 5.8026 0.0422 38 1 5.6489 5.5439 1.7884 39 1 7.9126 3.1348 -1.2195 40 1 9.3730 0.9709 -3.2960 41 1 6.1740 1.8876 0.9661 42 1 6.1916 2.9632 2.3978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112071050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -192.936221 kcal Electronic energy + Delta-G solvation = -29008.263157 eV Core-core repulsion = 24506.164498 eV Total energy + Delta-G solvation = -4502.098659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -51.12104 -48.59518 -48.57407 -41.33182 -39.15088 -35.81532 -35.62705 -33.46553 -32.19207 -29.92497 -29.13650 -28.22267 -27.28735 -26.03839 -24.40862 -23.16267 -21.73630 -20.27492 -19.58893 -19.40279 -19.14435 -18.55114 -18.13120 -17.06088 -16.91413 -16.60091 -16.49105 -15.77436 -15.67306 -15.47451 -15.33946 -15.14862 -15.01578 -14.97336 -14.73423 -14.68969 -14.64843 -14.48681 -14.18670 -13.96776 -13.66040 -13.39364 -13.15317 -13.05532 -12.99138 -12.85149 -12.63167 -12.58041 -12.33100 -12.26692 -12.18162 -12.07556 -11.73850 -11.12079 -10.99446 -10.79389 -9.93538 -9.01276 -8.67252 -7.91266 -5.21434 0.61842 1.40659 1.54080 1.54170 1.59749 1.63348 1.64331 1.96859 2.56527 2.76795 2.82876 2.98028 3.40165 3.44317 3.56107 3.67691 3.76736 3.79273 3.89486 4.00866 4.21024 4.22764 4.34365 4.37519 4.46065 4.50319 4.53235 4.58633 4.70150 4.76175 4.83694 4.89484 4.91344 4.96055 5.17425 5.29277 5.58262 6.26770 6.40514 6.98507 7.36625 8.02373 8.27370 9.30706 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.004755 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.887019 B = 5887.280129 C = 8712.680760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.288 6.288 3 C -0.055 4.055 4 C -0.079 4.079 5 H 0.107 0.893 6 C -0.132 4.132 7 C 0.548 3.452 8 O -0.576 6.576 9 N -0.610 5.610 10 C 0.119 3.881 11 C -0.157 4.157 12 H 0.119 0.881 13 C 0.473 3.527 14 F -0.185 7.185 15 F -0.181 7.181 16 F -0.176 7.176 17 C 0.174 3.826 18 H 0.080 0.920 19 N -0.719 5.719 20 C -0.239 4.239 21 H 0.083 0.917 22 C -0.059 4.059 23 N -0.962 5.962 24 Si 0.961 3.039 25 H -0.303 1.303 26 H -0.281 1.281 27 H -0.276 1.276 28 C 0.079 3.921 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.375 0.625 40 H 0.249 0.751 41 H 0.086 0.914 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 3.537 9.539 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.063 6.063 3 C -0.203 4.203 4 C -0.101 4.101 5 H 0.125 0.875 6 C -0.190 4.190 7 C 0.337 3.663 8 O -0.456 6.456 9 N -0.342 5.342 10 C -0.004 4.004 11 C -0.178 4.178 12 H 0.137 0.863 13 C 0.418 3.582 14 F -0.166 7.166 15 F -0.163 7.163 16 F -0.157 7.157 17 C 0.063 3.937 18 H 0.098 0.902 19 N -0.358 5.358 20 C -0.371 4.371 21 H 0.101 0.899 22 C -0.253 4.253 23 N -0.612 5.612 24 Si 0.791 3.209 25 H -0.230 1.230 26 H -0.207 1.207 27 H -0.202 1.202 28 C -0.046 4.046 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.208 0.792 40 H 0.058 0.942 41 H 0.104 0.896 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.037 2.927 9.376 15.536 hybrid contribution 0.201 0.554 -0.609 0.847 sum -11.837 3.481 8.768 15.136 Atomic orbital electron populations 1.23466 0.91248 1.07626 1.05849 1.87044 1.10587 1.10555 1.98115 1.23095 0.96909 0.94434 1.05909 1.20897 0.95277 0.91847 1.02081 0.87466 1.21648 1.00969 1.01899 0.94448 1.20347 0.79369 0.91113 0.75465 1.90653 1.49403 1.54594 1.50959 1.48832 1.18769 1.09115 1.57509 1.22208 0.88715 0.85401 1.04044 1.23699 0.96316 0.96447 1.01338 0.86304 1.20073 0.78551 0.79931 0.79654 1.93218 1.34212 1.94240 1.94964 1.93186 1.93125 1.37592 1.92389 1.93171 1.92300 1.94365 1.35865 1.21204 0.94460 0.86839 0.91206 0.90211 1.42492 1.62063 1.28353 1.02927 1.19489 1.24051 1.00601 0.92924 0.89867 1.25374 1.02720 1.02036 0.95133 1.69785 1.51663 1.42366 0.97352 0.85403 0.79094 0.80496 0.75883 1.22984 1.20702 1.20211 1.23528 0.86973 0.96010 0.98112 0.86639 0.89419 0.89787 0.89242 0.89712 0.92961 0.92715 0.90004 0.89008 0.88037 0.79237 0.94166 0.89604 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.76 113.37 1.22 -0.44 16 2 S -0.29 -6.50 21.12 -56.49 -1.19 -7.70 16 3 C -0.05 -1.32 4.85 71.98 0.35 -0.97 16 4 C -0.08 -2.17 2.14 -11.54 -0.02 -2.20 16 5 H 0.11 2.78 7.00 -2.39 -0.02 2.76 16 6 C -0.13 -4.10 9.07 71.98 0.65 -3.45 16 7 C 0.55 17.03 7.00 87.66 0.61 17.64 16 8 O -0.58 -20.69 16.53 -3.02 -0.05 -20.74 16 9 N -0.61 -17.53 3.32 -807.93 -2.68 -20.21 16 10 C 0.12 3.08 6.36 86.53 0.55 3.63 16 11 C -0.16 -4.42 2.84 -9.89 -0.03 -4.45 16 12 H 0.12 3.66 7.64 -2.39 -0.02 3.64 16 13 C 0.47 12.60 2.53 71.98 0.18 12.78 16 14 F -0.18 -5.79 16.93 44.97 0.76 -5.03 16 15 F -0.18 -4.65 17.17 44.97 0.77 -3.88 16 16 F -0.18 -4.31 16.05 44.97 0.72 -3.58 16 17 C 0.17 5.65 2.99 45.90 0.14 5.79 16 18 H 0.08 2.58 7.37 -2.39 -0.02 2.56 16 19 N -0.72 -31.08 5.14 -318.67 -1.64 -32.72 16 20 C -0.24 -11.66 9.97 84.03 0.84 -10.83 16 21 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 23 N -0.96 -54.79 13.06 21.65 0.28 -54.50 16 24 Si 0.96 43.19 29.55 68.60 2.03 45.22 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 28 C 0.08 2.21 6.47 86.53 0.56 2.77 16 29 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.15 8.02 -2.39 -0.02 2.13 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.43 6.99 -2.39 -0.02 2.41 16 37 H 0.09 2.43 7.93 -2.39 -0.02 2.41 16 38 H 0.10 2.21 7.22 -2.39 -0.02 2.19 16 39 H 0.37 18.06 7.50 -92.71 -0.70 17.36 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.09 2.69 6.83 -2.39 -0.02 2.67 16 42 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -59.92 370.30 4.88 -55.04 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.35 Total: 30.45 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 5.52 Total: 17.64 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -4.03 Total: -107.43 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 2.26 Total: -12.49 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.19 Total: -7.70 kcal Total: -59.92 4.88 -55.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112071050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.892 kcal (2) G-P(sol) polarization free energy of solvation -59.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds