Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.64416 * 2 1 4 4 C 1.54325 * 110.71807 * 123.14491 * 2 1 3 5 5 N 1.47023 * 107.27284 * 140.72951 * 4 2 1 6 6 C 1.34778 * 125.64979 * 181.01769 * 5 4 2 7 7 O 1.21278 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00209 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48496 * 109.47141 * 59.99753 * 14 12 10 16 16 H 1.48497 * 109.46782 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00030 * 14 12 10 18 18 C 1.47422 * 108.70279 * 1.28568 * 5 4 2 19 19 C 1.55131 * 104.72363 * 335.55352 * 18 5 4 20 20 H 1.09001 * 110.94061 * 155.28880 * 19 18 5 21 21 N 1.46500 * 111.19092 * 279.19199 * 19 18 5 22 22 C 1.38570 * 120.00027 * 267.18364 * 21 19 18 23 23 C 1.39469 * 120.51367 * 0.02562 * 22 21 19 24 24 C 1.38471 * 118.31031 * 180.02562 * 23 22 21 25 25 F 1.35098 * 120.43020 * 180.02562 * 24 23 22 26 26 N 1.32786 * 119.13596 * 359.97438 * 24 23 22 27 27 C 1.31758 * 120.96833 * 0.02562 * 26 24 23 28 28 N 1.31762 * 121.85622 * 359.71286 * 27 26 24 29 29 H 1.09004 * 109.47032 * 298.31458 * 1 2 3 30 30 H 1.09006 * 109.46616 * 58.30915 * 1 2 3 31 31 H 1.08999 * 109.47810 * 178.31421 * 1 2 3 32 32 H 1.08998 * 109.88499 * 21.30886 * 4 2 1 33 33 H 1.09002 * 110.00828 * 260.21620 * 4 2 1 34 34 H 1.08999 * 109.47278 * 59.99800 * 8 6 5 35 35 H 1.09002 * 109.46837 * 300.00183 * 8 6 5 36 36 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 37 37 H 1.09003 * 110.36588 * 94.47991 * 18 5 4 38 38 H 1.09004 * 110.36868 * 216.80396 * 18 5 4 39 39 H 0.97002 * 120.00247 * 87.18457 * 21 19 18 40 40 H 1.07994 * 120.84405 * 359.97438 * 23 22 21 41 41 H 1.08003 * 119.07367 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0759 -0.7892 1.2086 5 7 3.2469 -1.5463 0.7426 6 6 3.9956 -2.3769 1.4951 7 8 3.7210 -2.5496 2.6637 8 6 5.1737 -3.0910 0.8844 9 16 5.9692 -4.1249 2.1391 10 6 7.2724 -4.8220 1.1797 11 1 7.3767 -4.5580 0.1377 12 6 8.1689 -5.7055 1.7649 13 7 8.0421 -6.0268 3.0351 14 14 9.5553 -6.4384 0.7498 15 1 10.4163 -5.3474 0.2271 16 1 10.3664 -7.3450 1.6015 17 1 8.9847 -7.2061 -0.3861 18 6 3.4706 -1.2415 -0.6823 19 6 2.0827 -0.7949 -1.2125 20 1 2.1880 -0.1517 -2.0862 21 7 1.2341 -1.9505 -1.5138 22 6 1.2121 -2.4787 -2.7946 23 6 1.9939 -1.9191 -3.8050 24 6 1.9363 -2.4830 -5.0684 25 9 2.6760 -1.9755 -6.0785 26 7 1.1454 -3.5296 -5.2738 27 6 0.4198 -4.0333 -4.2961 28 7 0.4487 -3.5307 -3.0785 29 1 -0.3633 0.4875 0.9047 30 1 -0.3633 0.5399 -0.8745 31 1 -0.3635 -1.0272 -0.0302 32 1 1.3139 -1.4754 1.5781 33 1 2.3707 -0.1012 2.0010 34 1 5.8887 -2.3582 0.5102 35 1 4.8316 -3.7180 0.0610 36 1 8.6684 -6.6445 3.4438 37 1 4.1969 -0.4357 -0.7884 38 1 3.8101 -2.1316 -1.2120 39 1 0.6876 -2.3458 -0.8167 40 1 2.6274 -1.0671 -3.6072 41 1 -0.2133 -4.8849 -4.4974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112306840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -13.839414 kcal Electronic energy + Delta-G solvation = -26694.505550 eV Core-core repulsion = 22650.862297 eV Total energy + Delta-G solvation = -4043.643253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.45058 -41.33736 -40.23287 -38.15055 -35.64985 -33.39691 -32.88087 -32.45707 -31.02907 -29.57812 -29.07414 -26.28817 -25.45424 -25.00094 -24.06072 -22.92246 -20.62132 -19.66761 -19.12800 -18.50191 -17.73101 -16.88127 -16.73184 -16.57514 -16.10639 -15.89367 -15.63265 -15.14087 -14.85243 -14.82813 -14.53527 -14.49174 -14.00859 -13.96130 -13.83719 -13.43914 -13.13094 -12.75045 -12.62358 -12.47326 -12.16837 -11.90282 -11.54522 -11.40378 -11.24819 -11.07711 -11.05670 -11.02949 -10.79275 -10.18827 -9.86068 -9.80423 -9.52650 -9.08641 -8.86965 -8.53139 -8.28873 -6.54477 -6.24423 -3.95809 0.51741 0.85362 2.37025 2.78281 2.95881 3.06705 3.21908 3.23177 3.27306 3.38397 3.53048 3.77773 3.86487 4.04205 4.17806 4.20762 4.29250 4.64152 4.74226 4.77666 4.82413 4.90885 4.94812 5.10658 5.13617 5.20001 5.26593 5.32034 5.38869 5.51857 5.58676 5.65242 5.75291 5.83411 5.87832 6.06053 6.18262 6.25991 6.66836 7.00298 7.49870 7.56503 7.75570 8.31982 8.44513 9.20821 10.82971 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.003221 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.729512 B = 8690.066111 C =10793.504794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.104 0.896 4 C 0.109 3.891 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.511 6.511 8 C -0.147 4.147 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 C 0.084 3.916 19 C 0.135 3.865 20 H 0.112 0.888 21 N -0.687 5.687 22 C 0.467 3.533 23 C -0.321 4.321 24 C 0.386 3.614 25 F -0.102 7.102 26 N -0.594 5.594 27 C 0.379 3.621 28 N -0.582 5.582 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.269 0.731 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.415 0.585 40 H 0.155 0.845 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.006 14.177 -13.877 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.122 0.878 4 C -0.014 4.014 5 N -0.363 5.363 6 C 0.338 3.662 7 O -0.385 6.385 8 C -0.297 4.297 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.502 5.502 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.199 1.199 18 C -0.041 4.041 19 C 0.028 3.972 20 H 0.130 0.870 21 N -0.318 5.318 22 C 0.223 3.777 23 C -0.351 4.351 24 C 0.228 3.772 25 F -0.081 7.081 26 N -0.319 5.319 27 C 0.090 3.910 28 N -0.307 5.307 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.254 0.746 40 H 0.172 0.828 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -17.667 13.201 -12.067 25.140 hybrid contribution 1.804 0.331 -1.860 2.612 sum -15.864 13.532 -13.927 25.074 Atomic orbital electron populations 1.21714 0.93044 1.02495 1.02686 1.22559 0.97204 0.99800 0.93085 0.87753 1.21991 0.88308 0.94858 0.96272 1.48446 1.30627 1.46432 1.10782 1.20042 0.82715 0.77605 0.85809 1.90720 1.69755 1.62060 1.15965 1.23506 0.97704 1.02867 1.05657 1.85394 1.33472 1.52374 1.11950 1.22808 1.15087 1.31929 0.98679 0.91022 1.24985 0.97633 0.95596 0.95231 1.70007 1.36546 1.32839 1.10852 0.86229 0.80780 0.78927 0.79623 1.19892 1.20735 1.19907 1.22888 0.96457 1.02135 0.82582 1.22345 0.89613 0.86530 0.98697 0.87045 1.44475 1.47301 1.32614 1.07454 1.18243 0.86717 0.86886 0.85857 1.21802 1.11110 1.09100 0.93050 1.17997 0.87269 0.88781 0.83193 1.91665 1.72732 1.84416 1.59272 1.67858 1.12250 1.13730 1.38099 1.24558 0.90350 0.94994 0.81123 1.68023 1.25696 1.13250 1.23689 0.91520 0.91817 0.92202 0.91280 0.90961 0.89314 0.89503 0.92079 0.89760 0.89780 0.74605 0.82782 0.77587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.81 37.16 0.33 -0.36 16 2 C -0.11 -0.60 3.41 -88.78 -0.30 -0.90 16 3 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 4 C 0.11 1.06 6.45 -3.06 -0.02 1.04 16 5 N -0.62 -7.97 3.32 -170.38 -0.57 -8.54 16 6 C 0.55 10.18 7.87 -10.99 -0.09 10.09 16 7 O -0.51 -11.53 16.19 5.56 0.09 -11.44 16 8 C -0.15 -2.97 5.16 36.00 0.19 -2.78 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 11 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 12 C 0.08 2.14 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 14 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.08 0.76 6.41 -2.41 -0.02 0.74 16 19 C 0.13 0.83 2.92 -65.66 -0.19 0.64 16 20 H 0.11 0.45 6.38 -51.93 -0.33 0.12 16 21 N -0.69 -5.33 4.69 -51.61 -0.24 -5.57 16 22 C 0.47 4.35 7.71 -154.77 -1.19 3.16 16 23 C -0.32 -2.79 9.29 -39.04 -0.36 -3.15 16 24 C 0.39 4.03 8.50 -17.05 -0.14 3.89 16 25 F -0.10 -1.07 17.30 2.25 0.04 -1.03 16 26 N -0.59 -6.52 10.45 -14.98 -0.16 -6.68 16 27 C 0.38 3.53 12.28 -92.21 -1.13 2.39 16 28 N -0.58 -5.96 10.47 -13.84 -0.14 -6.11 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 6.36 -51.93 -0.33 0.00 16 32 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 35 H 0.09 1.67 7.85 -51.91 -0.41 1.27 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.86 7.48 -51.93 -0.39 0.48 16 39 H 0.42 3.42 7.27 -40.82 -0.30 3.12 16 40 H 0.15 0.96 6.29 -52.49 -0.33 0.63 16 41 H 0.21 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -35.97 363.36 -9.74 -45.71 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.99 Total: -0.82 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.74 Total: 1.79 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.38 Total: -52.29 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.97 -9.74 -45.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.873 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds